Plant FIBer expression Database

Potri.002G248800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G48545 227 / 2e-76 HINT3 histidine triad nucleotide-binding 3 (.1)
AT1G31160 59 / 9e-11 HINT2 ,HINT 2 HISTIDINE TRIAD NUCLEOTIDE-BINDING 2 (.1)
AT5G58240 50 / 1e-07 FHIT FRAGILE HISTIDINE TRIAD (.1.2)
AT3G56490 48 / 3e-07 HIT3, HINT1 HISTIDINE TRIAD NUCLEOTIDE-BINDING 1, HIS triad family protein 3 (.1)
AT4G16566 43 / 2e-05 HINT4 histidine triad nucleotide-binding 4 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G124700
[exp]
56 / 1e-09 AT1G31160 224 / 1e-75 HISTIDINE TRIAD NUCLEOTIDE-BINDING 2 (.1)
Potri.016G023700
[exp]
50 / 1e-07 AT3G56490 217 / 2e-73 HISTIDINE TRIAD NUCLEOTIDE-BINDING 1, HIS triad family protein 3 (.1)
Potri.019G133200
[exp]
42 / 4e-05 AT5G58240 158 / 1e-50 FRAGILE HISTIDINE TRIAD (.1.2)
Potri.013G161100
[exp]
42 / 6e-05 AT5G58240 149 / 8e-47 FRAGILE HISTIDINE TRIAD (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025883
[exp]
240 / 4e-81 AT5G48545 223 / 1e-74 histidine triad nucleotide-binding 3 (.1)
Lus10038220
[exp]
220 / 2e-73 AT5G48545 216 / 7e-72 histidine triad nucleotide-binding 3 (.1)
Lus10031011
[exp]
53 / 5e-09 AT3G56490 228 / 2e-78 HISTIDINE TRIAD NUCLEOTIDE-BINDING 1, HIS triad family protein 3 (.1)
Lus10036217
[exp]
54 / 2e-08 AT2G35110 2277 / 0.0 NCK-ASSOCIATED PROTEIN 1, GNARLED, transcription activators (.1.2)
Lus10035409
[exp]
51 / 3e-08 AT3G56490 224 / 1e-76 HISTIDINE TRIAD NUCLEOTIDE-BINDING 1, HIS triad family protein 3 (.1)
Lus10019126
[exp]
41 / 0.0001 AT5G58240 236 / 6e-81 FRAGILE HISTIDINE TRIAD (.1.2)
Lus10034436
[exp]
41 / 0.0002 AT5G58240 235 / 1e-78 FRAGILE HISTIDINE TRIAD (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0265 HIT PF01230 HIT HIT domain
Representative CDS sequence
>Potri.002G248800.2 pacid=42778624 polypeptide=Potri.002G248800.2.p locus=Potri.002G248800 ID=Potri.002G248800.2.v4.1 annot-version=v4.1
ATGGAGTCACGAAGTAGGCTCTCCATTATCTGCTCCCATCTCCTCCCTGGCTCTCCCTCTCCGCCTTCACGTTTATCTTCTTCCATCACTTCTTCTGCCT
CCATTAATGATGCTGCTGGCGACACGAGGAATCACCAACTAGACTGCGTTTTCTGTAGGATTGTTCGCGGTGAATCTCCTGCGTTTAAGCTTTATGAAGA
TGAGACATGCCTGTGTATTTTGGATTCCAGTCCATTGAGTCCCGGGCACTCTCTTATCATCCCAAAATCTCATTTTTCTTGCCTGGAAGCCACTCCTCCT
TCTGTGGTAGCAGCAATGTGTTCAAAGGTGCCTTCAATTGGTAATGCAATCATGAAAGCAAATGGTTCTGATTCTTTCAACTTGTTGGTAAATAACGGTG
CTGCTGCAGGCCAAGTCATTTTTCATACGCACATCCACATAATCCCCCGTAAGGCGCGTGATTGCTTATGGACCACTGAGAGTTTGCGAAGGCGTCCCCT
GAATTTTGACCAGGAAGCTTCTCAACTTGTCAATCGTGTTCGAGAGCAGTTATCAAGCATCTCTCCCGAAGACGGAAAAGATTCAAGAATCTAG
AA sequence
>Potri.002G248800.2 pacid=42778624 polypeptide=Potri.002G248800.2.p locus=Potri.002G248800 ID=Potri.002G248800.2.v4.1 annot-version=v4.1
MESRSRLSIICSHLLPGSPSPPSRLSSSITSSASINDAAGDTRNHQLDCVFCRIVRGESPAFKLYEDETCLCILDSSPLSPGHSLIIPKSHFSCLEATPP
SVVAAMCSKVPSIGNAIMKANGSDSFNLLVNNGAAAGQVIFHTHIHIIPRKARDCLWTTESLRRRPLNFDQEASQLVNRVREQLSSISPEDGKDSRI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G48545 HINT3 histidine triad nucleotide-bin... Potri.002G248800
[exp]
0 1
AT4G37920 unknown protein Potri.007G000400
[exp]
2.82 0.9763
AT3G63490 EMB3126 EMBRYO DEFECTIVE 3126, Ribosom... Potri.009G057100
[exp]
7.93 0.9736 Pt-RPL1.1
AT2G37220 RNA-binding (RRM/RBD/RNP motif... Potri.016G090700
[exp]
8.24 0.9747 RBP29.1
AT3G53130 CYP97C1, LUT1 LUTEIN DEFICIENT 1, CYTOCHROME... Potri.006G119800
[exp]
9.48 0.9676 CYP97C4
AT4G17040 HON5, CLPR4 happy on norflurazon 5, CLP pr... Potri.003G083300
[exp]
11.61 0.9712
AT4G24770 CP31, ATRBP33, ... ARABIDOPSIS THALIANA RNA BINDI... Potri.012G090200
[exp]
11.66 0.9735
AT3G55400 OVA1 OVULE ABORTION 1, methionyl-tR... Potri.010G207300
[exp]
11.74 0.9704
AT1G69935 SHW1 short hypocotyl in white light... Potri.008G190900
[exp]
12.00 0.9655
AT5G52440 HCF106 HIGH CHLOROPHYLL FLUORESCENCE ... Potri.015G147100
[exp]
13.49 0.9699 Pt-HCF106.1
AT1G08530 unknown protein Potri.013G052700
[exp]
14.17 0.9324

Potri.002G248800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.