Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25250 419 / 7e-145 AtOXI1, OXI1, AGC2-1 oxidative signal-inducible1, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT4G13000 404 / 9e-140 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT3G20830 254 / 2e-80 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT1G51170 250 / 3e-79 Protein kinase superfamily protein (.1) AT5G58140 221 / 3e-64 NPL1, PHOT2 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) AT1G79250 200 / 2e-58 AGC1.7 AGC kinase 1.7 (.1.2) AT3G52890 204 / 6e-58 KIPK KCBP-interacting protein kinase (.1.2) AT3G14370 197 / 8e-58 WAG2 Protein kinase superfamily protein (.1) AT5G03640 203 / 1e-57 Protein kinase superfamily protein (.1) AT2G36350 203 / 1e-57 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G018300 [exp] 252 / 2e-79 AT3G20830 469 / 8e-165 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.003G205800 [exp] 252 / 2e-79 AT3G20830 475 / 5e-167 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.001G342000 [exp] 216 / 6e-62 AT3G45780 1388 / 0.0 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) Potri.008G024000 [exp] 206 / 7e-62 AT3G44610 487 / 1e-170 Protein kinase superfamily protein (.1) Potri.015G093400 [exp] 205 / 4e-61 AT2G26700 551 / 0.0 PINOID2, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.006G114900 [exp] 213 / 6e-61 AT3G52890 806 / 0.0 KCBP-interacting protein kinase (.1.2) Potri.004G186300 [exp] 208 / 8e-60 AT2G36350 623 / 0.0 Protein kinase superfamily protein (.1) Potri.009G146700 [exp] 205 / 1e-58 AT2G36350 621 / 0.0 Protein kinase superfamily protein (.1) Potri.004G209700 [exp] 206 / 2e-58 AT5G58140 1332 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038221 [exp] 424 / 2e-146 AT3G25250 434 / 1e-150 oxidative signal-inducible1, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10025882 [exp] 414 / 7e-143 AT3G25250 434 / 2e-150 oxidative signal-inducible1, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10009592 [exp] 384 / 7e-131 AT3G25250 429 / 7e-149 oxidative signal-inducible1, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10020411 [exp] 297 / 6e-96 AT3G25250 318 / 3e-104 oxidative signal-inducible1, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10031830 [exp] 236 / 8e-74 AT3G20830 416 / 1e-144 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10006272 [exp] 204 / 9e-61 AT3G44610 591 / 0.0 Protein kinase superfamily protein (.1) Lus10033029 [exp] 205 / 1e-60 AT2G26700 572 / 0.0 PINOID2, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10020572 [exp] 203 / 2e-60 AT3G44610 585 / 0.0 Protein kinase superfamily protein (.1) Lus10030051 [exp] 202 / 1e-59 AT2G26700 577 / 0.0 PINOID2, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10026572 [exp] 205 / 2e-58 AT5G58140 1290 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.002G248900.1 pacid=42778876 polypeptide=Potri.002G248900.1.p locus=Potri.002G248900 ID=Potri.002G248900.1.v4.1 annot-version=v4.1 ATGAACATCGTCCATCACGAATACCTTGAAGAATCTGAAGAAGAAGAAAGATTGCCGATTTTAAACATGGAAAGCATGAAAGTGATATCCCCACTGGGGC GGGGAGCCAAAGGCGTGGTCTTTCTCGTTAAAGAGGAGCCACTCGGTGAATTTTACGCTTTGAAGGTGGTCTCGAGGGAATTTGTGAAGAAAAAGAAGCG TGGCAGTAATGATAAGGACATGGAAGGGGAAGAATACAGGAGGATTTATTTTGAACAGCAAGTTGTGAGTCGTTTTAACCACCCACTTTTGCCAAAACTG CGAGGTGTTTTGGCCACTGACAAGATTCTTGCCTACGCCATAGATTATTGCCCTGGTCGTGATCTTCATTTCTTGCGAAAACAACAGAGCGAGAAAATGT TCGCCATAGATACTATCAGGTTTTACGCGGCAGAGTTGGTTTTGGCATTGGAGTATCTACACCGTTTAGGGATAGCGTACAGAGATTTAAAGCCGGATAA TATAATGGTTCAAGAAAACGGTCACATAATGCTTGTAGATTTCGATCTATCCACAAAACTTCCTCCAAAATCTGCAAGCCCAGTTTCGGTAGTGGCAGAT CGGAGAAAACGACGGTCTCCTCTCCACCGATTTTTCAACAGGGGGGTTTCACCGGATGACTCAGGGGAGGAACTGGGCCACAGATTGTCGGAGCCAGACT CGACCTCCAAGTCTAACTCGTTCGTTGGAACGGAGGAGTACGTGGCACCGGAAGTGATTCAAGGGGACGGTCACGATTTTGGTGTTGATTGGTGGTCTTT GGGTGTCGTTTTGTACGAGATGTTGTATGGAGTGACGCCGTTTAAGGGGGAAAGTAGGAAGGAGTCTTTTTACAGGATTTTAACTAAAAAACCTGATTTA GTTGGTGAAGCGACGCCTTTGAGGGACTTGATTGGGAAGTTGTTGATCAAGGACCCTAAGGAGAGGATTAGGGTTGAGGGAATCAAGGGTCATGATTTTT TTAAAGGAATTGATTGGGATTTATTGCTGCAAATCTTGAGGCCACCATATATTCCTTTCATGGATAATTGGAGTGAGGGAGAGGGTAAGAATGGAATTAA GGAAATTGATGTGGAGATATTTGTCCAAGAAATTTTTGGTGCGGGTGATGATGATAAAAAGAAGAATCTTGATGGTAATCATCATGGGAATGAGAATAAA AAGGTTTGGGTTAATGGACTCAATACCAACCATCCGTGTGAGGCTGAGAATTTTCTTGTTTTTTAA
AA sequence Show only first row Show all	>Potri.002G248900.1 pacid=42778876 polypeptide=Potri.002G248900.1.p locus=Potri.002G248900 ID=Potri.002G248900.1.v4.1 annot-version=v4.1 MNIVHHEYLEESEEEERLPILNMESMKVISPLGRGAKGVVFLVKEEPLGEFYALKVVSREFVKKKKRGSNDKDMEGEEYRRIYFEQQVVSRFNHPLLPKL RGVLATDKILAYAIDYCPGRDLHFLRKQQSEKMFAIDTIRFYAAELVLALEYLHRLGIAYRDLKPDNIMVQENGHIMLVDFDLSTKLPPKSASPVSVVAD RRKRRSPLHRFFNRGVSPDDSGEELGHRLSEPDSTSKSNSFVGTEEYVAPEVIQGDGHDFGVDWWSLGVVLYEMLYGVTPFKGESRKESFYRILTKKPDL VGEATPLRDLIGKLLIKDPKERIRVEGIKGHDFFKGIDWDLLLQILRPPYIPFMDNWSEGEGKNGIKEIDVEIFVQEIFGAGDDDKKKNLDGNHHGNENK KVWVNGLNTNHPCEAENFLVF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G25250		AtOXI1, OXI1, A...	oxidative signal-inducible1, A...		Potri.002G248900 [exp]	0	1
AT4G20880			ethylene-responsive nuclear pr...		Potri.001G464300 [exp]	3.46	0.8237
					Potri.017G045266 [exp]	8.60	0.7671
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Potri.014G078700 [exp]	11.13	0.7571	BAP2.2
AT1G19210	AP2_ERF		Integrase-type DNA-binding sup...		Potri.006G218200 [exp]	12.84	0.7474
AT1G13360			unknown protein		Potri.008G119800 [exp]	14.14	0.6526
AT2G41835	C2H2ZnF		zinc finger (C2H2 type, AN1-li...		Potri.006G052200 [exp]	17.88	0.6634
AT2G23770			protein kinase family protein ...		Potri.007G032100 [exp]	19.44	0.6794
AT5G51990	AP2_ERF	CBF4, DREB1D	DEHYDRATION-RESPONSIVE ELEMENT...		Potri.015G136400 [exp]	21.02	0.6812
AT4G17230	GRAS	SCL13	SCARECROW-like 13 (.1)		Potri.006G016200 [exp]	22.58	0.7185	GRAS52
AT4G24570		DIC2	dicarboxylate carrier 2 (.1)		Potri.017G045400 [exp]	23.87	0.6670

Compare expression of checked genes

Potri.002G248900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.