Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25280 498 / 7e-173 Major facilitator superfamily protein (.1) AT3G25260 479 / 2e-165 Major facilitator superfamily protein (.1) AT1G69850 339 / 5e-110 NTL1, ATNRT1:2 nitrate transporter 1:2 (.1) AT1G27040 332 / 2e-107 Major facilitator superfamily protein (.1.2) AT5G62730 331 / 9e-107 Major facilitator superfamily protein (.1) AT1G59740 301 / 2e-95 Major facilitator superfamily protein (.1) AT1G33440 277 / 5e-86 Major facilitator superfamily protein (.1) AT3G54140 245 / 4e-74 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT1G62200 245 / 4e-74 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT2G26690 229 / 6e-68 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G070700 [exp] 354 / 9e-116 AT1G69850 686 / 0.0 nitrate transporter 1:2 (.1) Potri.010G034300 [exp] 345 / 1e-112 AT1G69850 781 / 0.0 nitrate transporter 1:2 (.1) Potri.002G129500 [exp] 305 / 5e-97 AT1G27040 456 / 5e-155 Major facilitator superfamily protein (.1.2) Potri.004G229000 [exp] 297 / 1e-93 AT1G59740 808 / 0.0 Major facilitator superfamily protein (.1) Potri.014G036200 [exp] 296 / 2e-93 AT1G27040 428 / 6e-144 Major facilitator superfamily protein (.1.2) Potri.004G064100 [exp] 296 / 3e-93 AT1G59740 417 / 2e-139 Major facilitator superfamily protein (.1) Potri.003G000800 [exp] 293 / 4e-92 AT1G59740 821 / 0.0 Major facilitator superfamily protein (.1) Potri.005G001400 [exp] 274 / 9e-85 AT1G59740 372 / 2e-121 Major facilitator superfamily protein (.1) Potri.019G067500 [exp] 267 / 4e-82 AT1G33440 734 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025881 [exp] 568 / 0 AT3G25280 558 / 0.0 Major facilitator superfamily protein (.1) Lus10033101 [exp] 369 / 1e-121 AT5G62730 748 / 0.0 Major facilitator superfamily protein (.1) Lus10036710 [exp] 332 / 2e-107 AT1G69850 822 / 0.0 nitrate transporter 1:2 (.1) Lus10013276 [exp] 325 / 1e-104 AT1G69850 780 / 0.0 nitrate transporter 1:2 (.1) Lus10037217 [exp] 324 / 2e-104 AT1G69850 813 / 0.0 nitrate transporter 1:2 (.1) Lus10030799 [exp] 323 / 9e-104 AT1G69850 771 / 0.0 nitrate transporter 1:2 (.1) Lus10015240 [exp] 314 / 3e-100 AT1G69850 469 / 1e-159 nitrate transporter 1:2 (.1) Lus10005417 [exp] 300 / 3e-95 AT1G69850 446 / 1e-150 nitrate transporter 1:2 (.1) Lus10006477 [exp] 295 / 4e-93 AT1G27040 439 / 2e-148 Major facilitator superfamily protein (.1.2) Lus10024457 [exp] 295 / 2e-92 AT1G59740 835 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00854 [poplar] [flax] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Potri.002G249100.2 pacid=42780141 polypeptide=Potri.002G249100.2.p locus=Potri.002G249100 ID=Potri.002G249100.2.v4.1 annot-version=v4.1 ATGGAAACTAAGGAGGGGAATAGTGGAATTGAGGAGTACTTCGACTGGAAAGGGAAGAAGGCAGATCCTAAAAAGCATGGTGGAATGAGAGCTGCTAGTT TGGCTTGTGTTGTGGAGGTGTTAGAGAACTTGGTATTCTTGTCTAACGCCACCAACTTTGTGGCATACTTCACTAAGACAATGCATTACACTATCTCTGA ATCTGCAAACATGGTGACTAATTTTATTGGAACCTCTTTTCTTCTCACAATATTTGGTGGGTTCATCGGCGACTCTTTCTTCACCAGATTCAGGACTTTC GTTGTCTTCTGTATAATTGAGTTACTGGGGATGATCCTTTTGACCGTTCAAGCTCATGACACTCGATTGCAACCAGCATTGCAAGAAAAGCCTTCTAGTT CTCAAGCTGCTGTTCTTTTTAGTGGACTCTATGCCATTGCGACAGGAGTTGGTGGAATCAAGGCTACCTTGCCTGCACATGGTGCTGATCAGTCCGACCA CAGCAAGCAGCGGTCCATTTCCTCATTTTTCAACTGGTTCTTCTTCTCTTTATGCATAGGAGGCTTGCTGTCCTCGACTATTATGGTATGGATTGAAGAG AACCGAGGCTGGAATTGGAGTTTTAAGATATCAGTTGTTGTCTTGGGTGTGGCGCTTTGCATTTTCATTGCAGGTTTTCCAATTTACAGGTTCAAAAGAC CTGGTGGGAGTCCAATCACAAGAATCTTAAAGGTATTTGCTTCTGCTTCTCGGAACCGAAAAGTCTCATCAGGACTAGAGCTGATAAATGATGAAGTTGG AGAAAGATCCCATAAGAAGTTCAGATTCCTAGACAAGGCATTATTTGATGACACCATTAGTGCAGTTCAGGTCAAGGAAACAAGGACCTTCCTTGGCCTG CTTCCCATCTTTGCTAGCACAATCATGATGAACTGTTGCCTGGCCCAGCTACAGACATTTTCAGTGGAACAAGGGAGCATCATGAATAGAAAACTAAACA ATTTCCAAATCCCTACCCAGTCATTGACAGTGTTCCCCCTCATAGTCGTGCTTGCCAGCATACCTTTATTCGAACATTTAGCAAACTCTTACAAAAACAA GATGTCGGAAAACCATTACATTCTCGACCCACTCAAGAGGATTGGACTTGGGTTAGCACTAGCATCAGCATCCATGGCCGTGGCTGCTATTATTGAGTTT AAGAGACGTGAAGCAGCAGAGAATGGGCACACATTGTCTGTGTTTTGGCTAGGGGGGCAGTACCTTTTGTTGGGTGTTTCAGATATGCTGACTCTTGAGG GGATGCTTGAATTTTTCTACTCGGAAGCACCAGATAGCATGAGAAGTTTTTGCACTGCTTTGTCATGGTGCTCTACCTCTATGGGCTACTTCCTTAGCTC CGTACTAGTGTCCATAATCAACTCTATTACTGGCAAATTGGATCATGAATGGCTTGGGGGACATAATTTGAATCACAACCGTTTGGATCTATTTTACACA ATTCTTTGTATTCTGAACTTCCTGAACTTGCTGAATTATATTTACTGGGCCAAGAAGTATTAG
AA sequence Show only first row Show all	>Potri.002G249100.2 pacid=42780141 polypeptide=Potri.002G249100.2.p locus=Potri.002G249100 ID=Potri.002G249100.2.v4.1 annot-version=v4.1 METKEGNSGIEEYFDWKGKKADPKKHGGMRAASLACVVEVLENLVFLSNATNFVAYFTKTMHYTISESANMVTNFIGTSFLLTIFGGFIGDSFFTRFRTF VVFCIIELLGMILLTVQAHDTRLQPALQEKPSSSQAAVLFSGLYAIATGVGGIKATLPAHGADQSDHSKQRSISSFFNWFFFSLCIGGLLSSTIMVWIEE NRGWNWSFKISVVVLGVALCIFIAGFPIYRFKRPGGSPITRILKVFASASRNRKVSSGLELINDEVGERSHKKFRFLDKALFDDTISAVQVKETRTFLGL LPIFASTIMMNCCLAQLQTFSVEQGSIMNRKLNNFQIPTQSLTVFPLIVVLASIPLFEHLANSYKNKMSENHYILDPLKRIGLGLALASASMAVAAIIEF KRREAAENGHTLSVFWLGGQYLLLGVSDMLTLEGMLEFFYSEAPDSMRSFCTALSWCSTSMGYFLSSVLVSIINSITGKLDHEWLGGHNLNHNRLDLFYT ILCILNFLNLLNYIYWAKKY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G25280			Major facilitator superfamily ...		Potri.002G249100 [exp]	0	1
AT4G32870			Polyketide cyclase/dehydrase a...		Potri.006G237100 [exp]	2.23	0.9077
AT1G14590			Nucleotide-diphospho-sugar tra...		Potri.015G029200 [exp]	2.64	0.8723
AT4G22990			Major Facilitator Superfamily ...		Potri.014G078000 [exp]	5.65	0.8232
					Potri.001G410477 [exp]	6.78	0.9057
AT3G07970		QRT2	QUARTET 2, Pectin lyase-like s...		Potri.006G052700 [exp]	7.14	0.8980
AT5G03370			acylphosphatase family (.1)		Potri.006G124966 [exp]	10.95	0.8431
AT1G77160			Protein of unknown function (D...		Potri.002G071500 [exp]	13.49	0.8436
AT5G43150			unknown protein		Potri.001G037400 [exp]	13.96	0.8194
AT4G02590	bHLH	bHLH059, UNE12	unfertilized embryo sac 12, ba...		Potri.005G217800 [exp]	14.14	0.8306
AT4G35160			O-methyltransferase family pro...		Potri.019G102900 [exp]	15.87	0.8583	COMTL3,Pt-GSI.2

Compare expression of checked genes

Potri.002G249100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.