Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25290 451 / 1e-158 Auxin-responsive family protein (.1.2) AT4G12980 432 / 8e-151 Auxin-responsive family protein (.1) AT5G47530 339 / 2e-114 Auxin-responsive family protein (.1) AT4G17280 337 / 3e-113 Auxin-responsive family protein (.1) AT5G35735 316 / 5e-105 Auxin-responsive family protein (.1) AT3G59070 252 / 2e-79 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT2G04850 187 / 3e-55 Auxin-responsive family protein (.1) AT5G48750 148 / 7e-42 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT3G07390 139 / 3e-38 AIR12 Auxin-Induced in Root cultures 12, auxin-responsive family protein (.1) AT3G07570 127 / 5e-33 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G015000 [exp] 364 / 5e-124 AT5G47530 513 / 0.0 Auxin-responsive family protein (.1) Potri.016G010900 [exp] 347 / 3e-117 AT5G47530 498 / 8e-177 Auxin-responsive family protein (.1) Potri.010G156600 [exp] 342 / 2e-115 AT5G47530 497 / 2e-176 Auxin-responsive family protein (.1) Potri.014G162000 [exp] 336 / 3e-113 AT5G47530 369 / 2e-126 Auxin-responsive family protein (.1) Potri.010G156200 [exp] 334 / 2e-112 AT5G47530 472 / 1e-166 Auxin-responsive family protein (.1) Potri.002G222700 [exp] 315 / 8e-105 AT5G35735 369 / 8e-126 Auxin-responsive family protein (.1) Potri.019G095800 [exp] 266 / 7e-86 AT5G47530 310 / 7e-103 Auxin-responsive family protein (.1) Potri.001G031600 [exp] 266 / 1e-85 AT5G47530 312 / 7e-104 Auxin-responsive family protein (.1) Potri.019G096300 [exp] 265 / 2e-85 AT5G47530 310 / 7e-103 Auxin-responsive family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025877 [exp] 412 / 6e-144 AT3G25290 387 / 2e-134 Auxin-responsive family protein (.1.2) Lus10012350 [exp] 355 / 3e-120 AT5G35735 418 / 3e-145 Auxin-responsive family protein (.1) Lus10002274 [exp] 350 / 2e-118 AT5G47530 432 / 4e-151 Auxin-responsive family protein (.1) Lus10001734 [exp] 341 / 5e-115 AT5G47530 422 / 9e-147 Auxin-responsive family protein (.1) Lus10017564 [exp] 303 / 6e-100 AT5G47530 419 / 8e-146 Auxin-responsive family protein (.1) Lus10010498 [exp] 294 / 3e-96 AT5G47530 412 / 1e-142 Auxin-responsive family protein (.1) Lus10038225 [exp] 285 / 1e-95 AT3G25290 283 / 6e-95 Auxin-responsive family protein (.1.2) Lus10006398 [exp] 236 / 4e-75 AT5G47530 276 / 2e-91 Auxin-responsive family protein (.1) Lus10001162 [exp] 201 / 2e-60 AT2G04850 563 / 0.0 Auxin-responsive family protein (.1) Lus10001736 [exp] 197 / 5e-59 AT2G04850 559 / 0.0 Auxin-responsive family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0328 [poplar] [flax] 2heme_cytochrom PF03188 [poplar] [flax] Cytochrom_B561 Eukaryotic cytochrome b561 CL0328 [poplar] [flax] PF04526 [poplar] [flax] DUF568 Protein of unknown function (DUF568)
Representative CDS sequence Show only first row Show all	>Potri.002G249300.1 pacid=42777678 polypeptide=Potri.002G249300.1.p locus=Potri.002G249300 ID=Potri.002G249300.1.v4.1 annot-version=v4.1 ATGGCATCTCCGTTTAAAATTTCTGCTTTGCTTCTAACCTTTTGCGTCTCAATTTCTCTAACCTTACCCGTACGTTCACAAACATGCGCCTCACAGACGT TCACAAACAACAATCTGTACACCCACTGTTTAGACCTCCCTACACTCTCCTCCTACCTTCATTTCACCTACGATGCCGCAAATTCAACGCTGTCCGTCGC CTTCTTTGCTTCTCCTTCGAAATCCAACGGCTGGATCTCATGGGCCATAAATCCCAAGGTTGCAGCCATGGGCGGGGCCCAGGCACTGGTAGCGTTCAAG GACTCCAAGGGTGTAATGAGCGCAAAGACTTATAATATCAGCACTTCCACGCCTTATTCGGTTGAGCAGTCGAAGCTGGCCTTTGACGTCTGGGACACGC GCGCAGAAGAGGAAAGTGGGGTGATGAGAATATTTGCCAAGATTAAGGTCCCGCCGGAGCTGGCGGCGAAGGGGACGCTGAATCAGGTGTGGCAAGTTGG GTCAACTGTCGGTGCTGCTAAGGGTGTGCTGACAATCCATGATATGGGTGCTCCTAATTTGAACTCTAAAGGGACTTTGGATTTGAACGGAGGAAAAAGT GTTAGCTCTGGTGGACTGGATTCCAGGACGAAAAGAAAAAATATTCATGGAGTACTGAATGCTGTGAGCTGGGGAATTCTGTTTCCGCTTGGAATTGTAA TAGCAAGATATCTGAGAACCTTTCCATCAGCAGATCCTGCATGGTTTTACCTTCATGTTTCCTGTCAGGTCTCTGCCTATGCTATTGGGGTTGCAGGGTG GGCAACTGGTATAAAGCTTGGGAGTGAATCCAAGGGAGTCCAGTTTTCTCTTCATCGCAATATTGGGATCGCACTCTTCGCTCTTGCAACAGTGCAGATA TTTGCATTGTTCTTGAGGCCTAAGAAGGACCACAAATACCGCTTTTACTGGAATATCTACCATCATGGTGTCGGATATGCCATCCTCATCCTTGGCATCT TGAATGTGTTTAAAGGTCTAGATATCTTGCAGCCTGGAGATAAATGGAGAACAATTTACATAATTGCCATTGCAGTCTTGGGTGGAATTGCTGCATTGCT GGAATTAATCACTTGGATTGTAGTTTTGAGGAGGAAGTCTAGTAAATCCACTAAGCCCTATGAAGGATACGGTGGACAAAGCAGACCATGA
AA sequence Show only first row Show all	>Potri.002G249300.1 pacid=42777678 polypeptide=Potri.002G249300.1.p locus=Potri.002G249300 ID=Potri.002G249300.1.v4.1 annot-version=v4.1 MASPFKISALLLTFCVSISLTLPVRSQTCASQTFTNNNLYTHCLDLPTLSSYLHFTYDAANSTLSVAFFASPSKSNGWISWAINPKVAAMGGAQALVAFK DSKGVMSAKTYNISTSTPYSVEQSKLAFDVWDTRAEEESGVMRIFAKIKVPPELAAKGTLNQVWQVGSTVGAAKGVLTIHDMGAPNLNSKGTLDLNGGKS VSSGGLDSRTKRKNIHGVLNAVSWGILFPLGIVIARYLRTFPSADPAWFYLHVSCQVSAYAIGVAGWATGIKLGSESKGVQFSLHRNIGIALFALATVQI FALFLRPKKDHKYRFYWNIYHHGVGYAILILGILNVFKGLDILQPGDKWRTIYIIAIAVLGGIAALLELITWIVVLRRKSSKSTKPYEGYGGQSRP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G25290			Auxin-responsive family protei...		Potri.002G249300 [exp]	0	1
AT1G62020			Coatomer, alpha subunit (.1)		Potri.015G069700 [exp]	16.40	0.8318
AT5G33320		ARAPPT, CUE1	PHOSPHOENOLPYRUVATE/PHOSPHATE ...		Potri.015G077900 [exp]	23.53	0.8318
AT3G08550		ABI8, ELD1, KOB...	KOBITO, ABA INSENSITIVE 8, elo...		Potri.003G202900 [exp]	28.63	0.8285	Pt-ABI8.1
AT5G35160			Endomembrane protein 70 protei...		Potri.018G113500 [exp]	35.21	0.8276
AT5G64090			unknown protein		Potri.003G020500 [exp]	43.86	0.8117
AT5G22370		QQT1, EMB1705	QUATRE-QUART 1, EMBRYO DEFECTI...		Potri.014G015700 [exp]	45.05	0.8083
AT4G23460			Adaptin family protein (.1)		Potri.001G101400 [exp]	45.43	0.8225
AT5G19780		TUA5	tubulin alpha-5 (.1)		Potri.001G004600 [exp]	123.76	0.7793
AT2G07360			SH3 domain-containing protein ...		Potri.018G149400 [exp]	136.01	0.7828
AT1G29690		CAD1	constitutively activated cell ...		Potri.006G107900 [exp]	141.91	0.7601

Compare expression of checked genes

Potri.002G249300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.