Plant FIBer expression Database

Potri.002G249400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G07400 1235 / 0 lipase class 3 family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020409
[exp]
1298 / 0 AT3G07400 1283 / 0.0 lipase class 3 family protein (.1)
Lus10009590
[exp]
1055 / 0 AT3G07400 1060 / 0.0 lipase class 3 family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0028 AB_hydrolase PF01764 Lipase_3 Lipase (class 3)
Representative CDS sequence
>Potri.002G249400.1 pacid=42780025 polypeptide=Potri.002G249400.1.p locus=Potri.002G249400 ID=Potri.002G249400.1.v4.1 annot-version=v4.1
ATGGATTCGATACAGAACAGAGTAGAGGCATGGATCAGAGACCAGAGAGCCAGGATCCTCAAGGTATCATGGGGGCCACTGCAGTGGAGAATGCGGTGGC
CTCCGTGGATCAACGGAGACGAAAGAGAACACAGAAAGATAATTCAACAAGAGTACGAACTCAGGAAGAAACAGCTTCACGATCTCTGTAATGCCGTCAA
GGCTGAGTCCGTTGCCGATTTGCAGGACATTCTATGTTGCATGGTACTCTCTGAATGCGTCTACAAGAGACCTGCTGATGAGATGGTTCGAGTCGTGAAT
AAATTTAAGGCTGACTTTGGAGGGCAAATCGTTGCTCTGGAACGCGTGCAGCAGTCTGCAGATCACGTACCTCACAGGTACTTATTGGCAGAAGCAGGCG
ACACGCTATTTGCTTCATTTATTGGAACAAAGCAGTACAAGGATGTCATGACCGATGCAAATATACTGCAAGGTGCTATATTTCATGAGGATACTGGAGA
GGATACTGTCCGGATGGATGTTGTTGAATCTGGCCAATGTGAAAGCCAGAAGGATAGTGGTGAAAATTGTTTGAATGCTTCCCAATCAAAACCAAAACAA
CTAAAAGATCAAATTAAGCCTGCTGCCCATCGAGGTTTCATGGCTCGTGCTAAGGGGATTCCTGCTTTAGAATTGTACAAGCTTGCTCAGAAGAAGAATC
GAAAACTTGTATTATGTGGACATTCACTCGGTGGAGCTGTGGCAGCTTTAGCTACCCTTGCCATTCTGAGGGTCATTGCTGCATCCTCACCATCGAAAGA
AAATGAAAGAATCCAGGTTAAATGCATCACATTTTCTCAACCCCCAGTTGGGAATGCTGCTTTACGAGATTATGTCCATAAAAAAGGCTGGCAACACCAT
TTTAAGAGTTACTGCATACCAGAGGATTTGGTGCCCCGCATCCTATCTCCTGCTTATTTTCATCATTATAACGCTCAACCTTTGTCAAAAAATGCCGAGG
TTGAAAGTTCCAGTGGAATTACGTCAAAACATGAGGAAAGAACAGAAAAACCAAGGGCACAGAAGCCAAAAGAGAATGAGGGGGAGCAGTTGGTTATGGG
CTTAGGCCCTGTGCAGACTTCTTTTTGGAGACTTGCAAAACTTGTGCCTTTAGAAGGTTTTCGAAGGCAATATAATAAATACAATGGAAAACAAGTTGAT
CCTATAGAAGCAACATCAGCAGCTAATTCTGCAAGACCTTCAATCGAGAATGTAGCTGAACCGCAATCTCTTGAAATCCAAGAGGGTTCTGATGGCATAT
CTCTTAAGCCATTATCTGACAGTAATAATGGGCTGCCAAACGAGGCAATGACTGGAAAAGTGGCTGAAAAAACTAATGCTAAAAGTGAGAATAAAAGGAA
CTGGAATAGAGTACCTTATTTGCCTTCATATGTCCCATTTGGTCAGCTCTTTCTCTTGGGGAACTCATCAGTGGAATTATTGTCGGGTACAGAGTACTCT
AAATTGACATCGGTCAGATCTGTGATTGCTGAGCTAAGGGAACGACTTCAATCACATTCAATGAAGTCATATAGGTTTCGATTTCAAAGAATCTATGATA
TGTGCATGGGGGATGGCACATCATCTTTCCTAGGAATTGAGCAACTGCCTCAATTTCCGAATTTGCAACAGTGGCTTGGGCTTGCAGTTGCTGGTGCTGT
AGAGCTTGCACATATTGTGGATTTACCAGTTATTCGCACAGCTACTTCAATTGTTCCTCTTGGATGGAGTGGTATTCCTGATGATAAGAATGGAGAGCCC
TTAAAAGTTGATATCACGGGTTTTAGGTTGCACCTTTGTAATCTGGTTCATGCTCAAGTAAATGGTAACTGGTGTTCAACTACAGTGGAGTCATTTCCTT
CAGCACCCAGCTACTATTCAAATAATGGATCACAGCCAGAATTACAAAAGATAAGGGTCTTAGTTGGGGCACCACTGAGACGACCACCAAAGCATCCAAT
AGTAACAGATTCTTTTATGCCTGTTTTTCCTTCTATTGATTCAGATGCTGCGAATCTCATTAAAGAAAACAGTTCAGGAAATGATGAGAAGTTCCTCCGA
CCAGATGGTTTGAGTGATTTTTGTATTTTTTGTACAAGTGATTTTGCAACTGTCTCAAAGGAGGTCCATGTCAGAACACGTAGAGTGCGCTTACTTGGTC
TTGAGGGTGCGGGTAAAACTTCTCTTTTTAAGGCTATTATGGGTCAAGGCAGACTAACCACCATTACCAATTTTGAGAATATTAATTTAGAGGCTGATAT
TCAAGAAGGTGTTGCTGGTGGTGTATGCTACTCAGATTCAGCTGGAGTAAATTTGCAGGAGCTGCATATGGAAGTCTCTCATTTCAGGGATGAACTGTGG
ATGGGAATTCGTGACCTTGGTAGGAAGACAGATTTGATAATTCTTGTGCACAACCTCTCCCATAAGATTCCTCGTTGCAGTAAACTGAATGCCTCACAGC
AACAGCCAGTCCTTTCACTTCTATTAGATGAGGCTAAAGTTCTTGGAATTCCTTGGGTTATTGCTGTAACAAACAAATTCTCTGTGAGTGCACACCAACA
AAAGGCAGCAATTGATGCTGTTTTGCAGGCGTACCAAGCATCTCCAAATACTGCAGAAGTTGTCAATTCCTGTCCCTATGTCATGTCCAGTGCAGCAAGT
GCCTCATTATCATTGACTGCAAGTAATGGAGATTCTTATGGGAAAACAGGTGCTCAAAAGCTTAGTTTTGATCCAATTAATCTTGTCCGGTGGCCATTTC
AGAAACGAGACACCATTTTTGCTGCTGAGGGTGTGAACTCACTTTGTCAACTTGTCCACCGTGTGCTGCAGAGCCATGAAGAGGCCTCTTTACAGGAATT
TGCTAGAGATAGGCTTTTGGCAGAGCTGGCACGAGAACATGCACTGGCAATAGATGCCAGTCGAAACTCTAAAGCCAAGGCATCTTCTTTAACCGCCGCA
GCTGTTGGCGCCTCCCTCGGGGCCGGTCTTGGCATTGTACTGGCTGTTGTCATGGGTGCAGCATCTGCTTTGAGGAAGCCCTAA
AA sequence
>Potri.002G249400.1 pacid=42780025 polypeptide=Potri.002G249400.1.p locus=Potri.002G249400 ID=Potri.002G249400.1.v4.1 annot-version=v4.1
MDSIQNRVEAWIRDQRARILKVSWGPLQWRMRWPPWINGDEREHRKIIQQEYELRKKQLHDLCNAVKAESVADLQDILCCMVLSECVYKRPADEMVRVVN
KFKADFGGQIVALERVQQSADHVPHRYLLAEAGDTLFASFIGTKQYKDVMTDANILQGAIFHEDTGEDTVRMDVVESGQCESQKDSGENCLNASQSKPKQ
LKDQIKPAAHRGFMARAKGIPALELYKLAQKKNRKLVLCGHSLGGAVAALATLAILRVIAASSPSKENERIQVKCITFSQPPVGNAALRDYVHKKGWQHH
FKSYCIPEDLVPRILSPAYFHHYNAQPLSKNAEVESSSGITSKHEERTEKPRAQKPKENEGEQLVMGLGPVQTSFWRLAKLVPLEGFRRQYNKYNGKQVD
PIEATSAANSARPSIENVAEPQSLEIQEGSDGISLKPLSDSNNGLPNEAMTGKVAEKTNAKSENKRNWNRVPYLPSYVPFGQLFLLGNSSVELLSGTEYS
KLTSVRSVIAELRERLQSHSMKSYRFRFQRIYDMCMGDGTSSFLGIEQLPQFPNLQQWLGLAVAGAVELAHIVDLPVIRTATSIVPLGWSGIPDDKNGEP
LKVDITGFRLHLCNLVHAQVNGNWCSTTVESFPSAPSYYSNNGSQPELQKIRVLVGAPLRRPPKHPIVTDSFMPVFPSIDSDAANLIKENSSGNDEKFLR
PDGLSDFCIFCTSDFATVSKEVHVRTRRVRLLGLEGAGKTSLFKAIMGQGRLTTITNFENINLEADIQEGVAGGVCYSDSAGVNLQELHMEVSHFRDELW
MGIRDLGRKTDLIILVHNLSHKIPRCSKLNASQQQPVLSLLLDEAKVLGIPWVIAVTNKFSVSAHQQKAAIDAVLQAYQASPNTAEVVNSCPYVMSSAAS
ASLSLTASNGDSYGKTGAQKLSFDPINLVRWPFQKRDTIFAAEGVNSLCQLVHRVLQSHEEASLQEFARDRLLAELAREHALAIDASRNSKAKASSLTAA
AVGASLGAGLGIVLAVVMGAASALRKP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G07400 lipase class 3 family protein ... Potri.002G249400
[exp]
0 1
AT5G38560 AtPERK8 proline-rich extensin-like rec... Potri.004G105200
[exp]
3.87 0.8667
AT5G43230 unknown protein Potri.010G057700
[exp]
6.32 0.8345
AT1G21430 YUC11 Flavin-binding monooxygenase f... Potri.005G186150
[exp]
8.24 0.7567
Potri.019G002502
[exp]
10.19 0.8258
AT4G27220 NB-ARC domain-containing disea... Potri.019G014374
[exp]
17.66 0.8378
AT5G61910 DCD (Development and Cell Deat... Potri.015G106400
[exp]
19.07 0.8045 Pt-BON1.2
AT4G27220 NB-ARC domain-containing disea... Potri.018G145566
[exp]
19.97 0.8391
AT3G14880 unknown protein Potri.007G098800
[exp]
23.55 0.7809
AT1G13330 AHP2 Arabidopsis Hop2 homolog (.1) Potri.010G127101
[exp]
24.00 0.7938
AT2G34400 Pentatricopeptide repeat (PPR-... Potri.001G063709
[exp]
26.40 0.8184

Potri.002G249400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.