Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-SYNC2.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07420 654 / 0 ATNS2, SYNC2_ARATH, NS2 SYNTHETASE C2, asparaginyl-tRNA synthetase 2 (.1) AT5G56680 465 / 1e-156 SYNC1ARATH, SYNC1, EMB2755 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT1G70980 445 / 7e-149 SYNC3, SYNC1 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT4G17300 345 / 2e-110 ATNS1, NS1, OVA8 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT1G68420 80 / 3e-18 Class II aaRS and biotin synthetases superfamily protein (.1) AT4G26870 75 / 8e-14 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT4G31180 68 / 9e-12 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) AT5G38750 51 / 1e-07 asparaginyl-tRNA synthetase family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G153900 [exp] 488 / 7e-166 AT5G56680 929 / 0.0 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Potri.018G070000 [exp] 488 / 2e-165 AT5G56680 931 / 0.0 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Potri.007G129800 [exp] 343 / 3e-109 AT4G17300 872 / 0.0 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Potri.017G028800 [exp] 336 / 9e-107 AT4G17300 888 / 0.0 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Potri.006G085400 [exp] 76 / 5e-14 AT4G31180 709 / 0.0 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025874 [exp] 681 / 0 AT3G07420 604 / 0.0 SYNTHETASE C2, asparaginyl-tRNA synthetase 2 (.1) Lus10032704 [exp] 484 / 5e-164 AT5G56680 907 / 0.0 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Lus10012920 [exp] 409 / 2e-135 AT5G56680 799 / 0.0 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Lus10038228 [exp] 377 / 1e-125 AT3G07420 353 / 7e-118 SYNTHETASE C2, asparaginyl-tRNA synthetase 2 (.1) Lus10007470 [exp] 310 / 4e-96 AT4G17300 873 / 0.0 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Lus10028945 [exp] 286 / 1e-88 AT4G17300 740 / 0.0 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Lus10008180 [exp] 199 / 2e-59 AT5G56680 268 / 2e-87 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Lus10018862 [exp] 77 / 3e-14 AT4G31180 667 / 0.0 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) Lus10028555 [exp] 71 / 2e-12 AT4G31180 606 / 0.0 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) Lus10028557 [exp] 50 / 6e-07 AT4G31180 235 / 8e-76 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0040 [poplar] [flax] tRNA_synt_II PF00152 [poplar] [flax] tRNA-synt_2 tRNA synthetases class II (D, K and N)
Representative CDS sequence Show only first row Show all	>Potri.002G249700.3 pacid=42778315 polypeptide=Potri.002G249700.3.p locus=Potri.002G249700 ID=Potri.002G249700.3.v4.1 annot-version=v4.1 ATGGCATCTCAAGAATCCATAATAGCCTCTCAAGAACCCAAAATAACCTCTCAAGAACCAAAAATGATCTCTCAAGAACCCAAAACAACCTCTCAAGAAC CAAAAATGATCTCTCAAGAACCCAAAACAACCTCTCAAGAACCCAAAATGATCTCTCAAGAGTCCAAATTGGCCTCTCAAGAACCCACAGTAACCTCTCA AGAACCCACAGTAACCTCTCAAGAACCAAAAATGATCTCCCAAGGGTCCAAATCGGCCTCTCAAGAACCCAATACGTCCTCCCAAGAACCTGTAACCACC ACCTCATCCAATCCATCATCCAAATACTCTAACCGGGTGGTTTTGAAAACCATTTTAGAGCCAAGTGACAGATGGAAGGAATTTGTGGATGAGAGAGTTG TGGTTGGTGGTTGGGTGAAGACTTCCAAGGAGGTGAATAAAGAGCCAGCTGTGCCGGAGCCCCAACAGCAGGCTACTGAAGCGCCTAATGTGTCTCCAGG GCACAAAGATGTGAGGTGTGTGGAGATTTTTCAGTCTAGAATACCTATATTTAGATCAATAGCAAAGATTTTTGGAGGGGGTGGTAGCAGTCATCCTGTT CGTGAGAAGCCGGAACCAGCAATTCCTGAGCCGCCTCGACCTTCTGTTGCTTACTTGCTTGTTAGTGATGGTTCTTCTGTTGCAAGTCTTCAGGTTGTGG TGGACTCCTCTATAGCTCCCCTCAGCCAGCTGCTGCCTATCGGAACTTGTATATTAGTTGAAGGTGTACTAAAGGAGCCATCAATGCAGGGAAAACATAG CATTGAGCTTAAAGTAGAGCAAATACTTCATATAGGGAAAGTGGAACAAGACAGGTATCCTTTATCAAAGAAACGATTGCCATTGGAGGCGTTGAGAGAC TGTTCTCATTTCCGGCCTCGAACAACAACGGTGGCATCTGTTACGAGAATCAGCAGTGCCCTAACTTTTGCGACTCAGACATTCTTCCACGACAAGGGGT TTCTCTATGTGCAGGTGCCCATTATCACAACAACAGATGGCGAAGGATTTAGCGAAAAGTTTCAGGTCACAACTGTTTTGGGAAAAGATGGCAAACAGAA TGATACAGGAGGTGTTAGCCTTGAAGTTGTCAAGGCTGCTGTGATACAGAAAAGTAATCTAGTTGAAGAACTAAAGAGAAGTGAAAGCAATAGAGAGGCA CTGGCTTCTGCAATTCAAGATTTGCGTAAAACGAACCAATTAGCATCACAATTAGAAGCAAAAGAGAAACTGAAATCAGGGCCTTCAATGAAGGCTGATA AACCTTCCTTTTATGGAGATTTCTTCTCTCAACAAACTTACCTTACTGTTTCTGGTCTTCTCCATCTGGAGAGCTATGCTTGTGCAATGGGAAATGTTTT CTCATTCGGACCTAGATTTCGAGCGGATAGAAAGGAATCTGCAAAGCGTATATCAGAAATGTGGATGGTTGAGGTTCAAATGGCTTTTTCACAATTAGAG GATGCAATGAACTGTGCAGATGAATATTTCAAGTTCCTCTGCAAATGGATTTTGAAAAATTGTTCAGAAGACATGAAATTTGTTTCTAAACGTATCGACA AATCTAGCAGCTATCGTCTTGAATCAATGATATCATCTTCAATTGAAAAGATTTCCTACATGGAAGCTTTGAAGAAGGTTGCAGTTAAATTCGAATTAAA CCAAGAATGGGGCATTGCTCTAACTCCAGAGCATCTAAGTTATTTGGCTGAAGATGTCTATCGTAAGCCTGTAATCATATACAATTATCCAAAAGAACTT AAGCCCTTTTATGTACGACTGAATGATGATGGGAAAACAGCTGCTGCATTTGATATGGTTGTACCCAAGGCTGGAACAATCATCACAGGTAGCCAAAGTG AGGAACGGATTGATATTCTAAACAAAACGATTGAAGAATTACGCTTGCCAAGAGAGCAGTATGAATGGTACATGGATCTTCGCAGGCATGGAACAGTCGA GCATTCTGGATTCAGTTTAGGGTTTGATCTTATGGTTCTGTTCACTACTGGCCTCCCTGATGTTAGAGATGTGATCCCTTTTCCAAGGAGCCGCGGCAAA GCAAACAACTAA
AA sequence Show only first row Show all	>Potri.002G249700.3 pacid=42778315 polypeptide=Potri.002G249700.3.p locus=Potri.002G249700 ID=Potri.002G249700.3.v4.1 annot-version=v4.1 MASQESIIASQEPKITSQEPKMISQEPKTTSQEPKMISQEPKTTSQEPKMISQESKLASQEPTVTSQEPTVTSQEPKMISQGSKSASQEPNTSSQEPVTT TSSNPSSKYSNRVVLKTILEPSDRWKEFVDERVVVGGWVKTSKEVNKEPAVPEPQQQATEAPNVSPGHKDVRCVEIFQSRIPIFRSIAKIFGGGGSSHPV REKPEPAIPEPPRPSVAYLLVSDGSSVASLQVVVDSSIAPLSQLLPIGTCILVEGVLKEPSMQGKHSIELKVEQILHIGKVEQDRYPLSKKRLPLEALRD CSHFRPRTTTVASVTRISSALTFATQTFFHDKGFLYVQVPIITTTDGEGFSEKFQVTTVLGKDGKQNDTGGVSLEVVKAAVIQKSNLVEELKRSESNREA LASAIQDLRKTNQLASQLEAKEKLKSGPSMKADKPSFYGDFFSQQTYLTVSGLLHLESYACAMGNVFSFGPRFRADRKESAKRISEMWMVEVQMAFSQLE DAMNCADEYFKFLCKWILKNCSEDMKFVSKRIDKSSSYRLESMISSSIEKISYMEALKKVAVKFELNQEWGIALTPEHLSYLAEDVYRKPVIIYNYPKEL KPFYVRLNDDGKTAAAFDMVVPKAGTIITGSQSEERIDILNKTIEELRLPREQYEWYMDLRRHGTVEHSGFSLGFDLMVLFTTGLPDVRDVIPFPRSRGK ANN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07420		ATNS2, SYNC2_AR...	SYNTHETASE C2, asparaginyl-tRN...		Potri.002G249700 [exp]	0	1	Pt-SYNC2.1
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.003G036200 [exp]	1.00	0.9642
AT1G73850			Protein of unknown function (D...		Potri.012G056400 [exp]	2.00	0.9523
AT5G04890		RTM2	RESTRICTED TEV MOVEMENT 2, HSP...		Potri.008G013800 [exp]	4.24	0.9366
AT3G50120			Plant protein of unknown funct...		Potri.001G071200 [exp]	4.89	0.9410
AT1G27680		APL2	ADPGLC-PPase large subunit (.1...		Potri.014G110000 [exp]	6.32	0.9328
AT3G10680			HSP20-like chaperones superfam...		Potri.008G014000 [exp]	6.70	0.9427
AT1G06490		CalS7, ATGSL7, ...	callose synthase 7, Arabidopsi...		Potri.005G203500 [exp]	7.48	0.9253	ATGSL11.1
AT2G24520		AHA5	H\(+\)-ATPase 5, H\(+\)-ATPase...		Potri.018G006000 [exp]	7.93	0.9356	Pt-VHA1.1
AT1G06490		CalS7, ATGSL7, ...	callose synthase 7, Arabidopsi...		Potri.002G058700 [exp]	8.66	0.9371	ATGSL11.2
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Potri.010G183000 [exp]	8.83	0.9013

Compare expression of checked genes

Potri.002G249700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.