Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25400 151 / 3e-48 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G148200 [exp] 161 / 3e-52 AT3G25400 175 / 2e-57 unknown protein Potri.002G235000 [exp] 158 / 5e-51 AT3G25400 134 / 5e-41 unknown protein Potri.010G069700 [exp] 134 / 1e-41 AT3G25400 166 / 4e-54 unknown protein Potri.008G168700 [exp] 133 / 3e-41 AT3G25400 170 / 9e-56 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020407 [exp] 172 / 2e-56 AT3G25400 178 / 1e-58 unknown protein Lus10009588 [exp] 167 / 1e-54 AT3G25400 177 / 5e-58 unknown protein Lus10003475 [exp] 135 / 4e-42 AT3G25400 164 / 3e-53 unknown protein Lus10015730 [exp] 123 / 4e-37 AT3G25400 157 / 1e-50 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0231 [poplar] [flax] MazG PF03819 [poplar] [flax] MazG MazG nucleotide pyrophosphohydrolase domain
Representative CDS sequence Show only first row Show all	>Potri.002G250000.1 pacid=42777002 polypeptide=Potri.002G250000.1.p locus=Potri.002G250000 ID=Potri.002G250000.1.v4.1 annot-version=v4.1 ATGACAAAGGCAACCGAAGGAGAAAGTGTCACTCTTGATCTCCTCAAGGGAAAAATGGCTGAGTTTGCCAAGGAAAGGAACTGGGACCAGTTTCATAGCC CCAGGAACCTGCTGTTGGCTCTGGTGGGTGAAGTTGGAGAATTATCGGAGATATTTCAGTGGAGAGGAGAGGTCCCAAAGGGACTTCCTGATTGGAAAGA AGAGGATAAAGTACATCTTGGTGAAGAGCTCTCAGATGTCTTGCTATACCTTGTCAGGCTCTCTGATATCTGTGGTATTGACCTAGGCAAAGCTGCTCTG AGGAAAGTGGGACTCAATGCCATCAAGTACCCAGTTGGCAGCAAGGGCTCTTCCAAGGAAACATAA
AA sequence Show only first row Show all	>Potri.002G250000.1 pacid=42777002 polypeptide=Potri.002G250000.1.p locus=Potri.002G250000 ID=Potri.002G250000.1.v4.1 annot-version=v4.1 MTKATEGESVTLDLLKGKMAEFAKERNWDQFHSPRNLLLALVGEVGELSEIFQWRGEVPKGLPDWKEEDKVHLGEELSDVLLYLVRLSDICGIDLGKAAL RKVGLNAIKYPVGSKGSSKET

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G25400			unknown protein		Potri.002G250000 [exp]	0	1
AT4G33565			RING/U-box superfamily protein...		Potri.017G049300 [exp]	10.04	0.7566
AT1G44750		ATPUP11	purine permease 11 (.1.2.3)		Potri.014G043900 [exp]	16.97	0.7034	Pt-ATPUP11.1
AT4G37790	HD	HAT22	Homeobox-leucine zipper protei...		Potri.007G008200 [exp]	18.16	0.6948
AT2G23620		ATMES1	ARABIDOPSIS THALIANA METHYL ES...		Potri.005G133800 [exp]	38.18	0.6684
AT5G59480			Haloacid dehalogenase-like hyd...		Potri.009G033500 [exp]	62.04	0.6390
AT4G36990	HSF	AT-HSFB1, ATHSF...	ARABIDOPSIS THALIANA HEAT SHOC...		Potri.007G043800 [exp]	65.32	0.6630
					Potri.019G016104 [exp]	102.54	0.6430
AT5G18860		NSH3	nucleoside hydrolase 3, inosin...		Potri.008G197500 [exp]	122.51	0.6206
AT1G18700			DNAJ heat shock N-terminal dom...		Potri.004G102875 [exp]	122.67	0.5881
AT3G59430			unknown protein		Potri.017G029800 [exp]	134.82	0.6353

Compare expression of checked genes

Potri.002G250000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.