Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27990 210 / 2e-68 ATYLMG1-2 YGGT family protein (.1) AT3G07430 201 / 1e-64 ATYLMG1-1, EMB1990 embryo defective 1990, YGGT family protein (.1) AT5G21920 73 / 3e-15 ATYLMG2 YGGT family protein (.1.2) AT5G36120 44 / 2e-05 atylmg3, CCB3 "cofactor assembly, complex C \(B6F\)", cofactor assembly, complex C (B6F) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G220400 [exp] 82 / 3e-18 AT5G21920 222 / 1e-72 YGGT family protein (.1.2) Potri.005G199000 [exp] 45 / 2e-05 AT5G36120 181 / 4e-58 "cofactor assembly, complex C \(B6F\)", cofactor assembly, complex C (B6F) (.1) Potri.002G062100 [exp] 41 / 0.0004 AT5G36120 184 / 2e-59 "cofactor assembly, complex C \(B6F\)", cofactor assembly, complex C (B6F) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020405 [exp] 237 / 9e-79 AT4G27990 199 / 1e-64 YGGT family protein (.1) Lus10009586 [exp] 224 / 1e-73 AT4G27990 204 / 2e-66 YGGT family protein (.1) Lus10009622 [exp] 73 / 2e-15 AT5G21920 181 / 7e-57 YGGT family protein (.1.2) Lus10008993 [exp] 73 / 2e-15 AT5G21920 186 / 1e-58 YGGT family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02325 [poplar] [flax] YGGT YGGT family
Representative CDS sequence Show only first row Show all	>Potri.002G250200.1 pacid=42777749 polypeptide=Potri.002G250200.1.p locus=Potri.002G250200 ID=Potri.002G250200.1.v4.1 annot-version=v4.1 ATGGCAATGATGCTTTCCTCCCAAACCGGCGCAGTCCTCCGCGCCCCATTCCTCCCCTCCCACTCTAACCTCTCCCGCCGCCTTCCTCTCACCGCCACCA CCACCACCACCACCACCCTTTGTCTGCCATCACAAAACCCCCTATCTCTCGCTCTCAAGTTCCCTAAACCATCACTGTCTTCGACTATCACCCCCAAACA ACGTATCCATAGGGTTCACCTCTCCCCCCAATCCACACAAATCCCTACCGAGTCACAACCCCAGCTCATCGGGTCAACTCGAACCGTCGCTACTATCCTA ACCCTAGCTCTCTCTCTCTCACGCATCTTCGTCACTTCAATCCAAAAATTCGTTCTTTCACATAATCTTTTCCCCACTCCTGATCAACTCGTGGCGATTC GTGCTTTACAAAGCAACCTGGTTCACTCAGTGGGCCCCTTTTTCTTCGCGGCGCTTAAGGACCGTCCTACCGGGTATTTAAACACCCCATTGACGGTGGT TGCGGCCGGTTTGGCTAAATGGCTCGATATATATAGTGGGGTTTTGATGGTCAGGGTTTTGCTTAGTTGGTTCCCTAACATTCCTTGGGACCGTCAGCCC TTATCAGCTATAAGGGACTTGTGTGATCCTTATTTAAACTTGTTTAGAAATATAATTCCTCCAATCTTCGATACTCTTGATGTTAGCCCGCTTTTAGCTT TCGCGGTTTTGGGCACACTCGGTTCCATTCTTAACAGCAGCAGAGGAATGTACTGA
AA sequence Show only first row Show all	>Potri.002G250200.1 pacid=42777749 polypeptide=Potri.002G250200.1.p locus=Potri.002G250200 ID=Potri.002G250200.1.v4.1 annot-version=v4.1 MAMMLSSQTGAVLRAPFLPSHSNLSRRLPLTATTTTTTTLCLPSQNPLSLALKFPKPSLSSTITPKQRIHRVHLSPQSTQIPTESQPQLIGSTRTVATIL TLALSLSRIFVTSIQKFVLSHNLFPTPDQLVAIRALQSNLVHSVGPFFFAALKDRPTGYLNTPLTVVAAGLAKWLDIYSGVLMVRVLLSWFPNIPWDRQP LSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSILNSSRGMY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27990		ATYLMG1-2	YGGT family protein (.1)		Potri.002G250200 [exp]	0	1
AT2G36000		EMB3114	EMBRYO DEFECTIVE 3114, Mitocho...		Potri.016G072200 [exp]	1.41	0.9855
AT2G38270		ATGRX2, CXIP2	GLUTAREDOXIN, CAX-interacting ...		Potri.016G119200 [exp]	1.73	0.9769
AT2G37400			Tetratricopeptide repeat (TPR)...		Potri.016G080000 [exp]	3.16	0.9699
AT3G58830			haloacid dehalogenase (HAD) su...		Potri.002G060600 [exp]	4.00	0.9794
AT3G22690			unknown protein		Potri.013G044700 [exp]	6.00	0.9766
AT5G62990		EMB1692	embryo defective 1692, Ubiquit...		Potri.002G233900 [exp]	6.48	0.9760
AT1G06190			Rho termination factor (.1.2)		Potri.002G037800 [exp]	7.00	0.9731
AT2G35490			Plastid-lipid associated prote...		Potri.001G137900 [exp]	8.66	0.9762
AT4G25270		OTP70	organelle transcript processin...		Potri.015G128800 [exp]	9.53	0.9682
AT5G52520		PRORS1, OVA6	PROLYL-TRNA SYNTHETASE 1, OVUL...		Potri.017G142500 [exp]	11.22	0.9700

Compare expression of checked genes

Potri.002G250200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.