Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07440 313 / 5e-109 unknown protein AT5G48530 279 / 3e-96 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G083100 [exp] 74 / 2e-17 AT3G07440 55 / 7e-11 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020404 [exp] 337 / 2e-118 AT3G07440 305 / 9e-106 unknown protein Lus10009585 [exp] 318 / 8e-111 AT3G07440 292 / 1e-100 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G250500.2 pacid=42777369 polypeptide=Potri.002G250500.2.p locus=Potri.002G250500 ID=Potri.002G250500.2.v4.1 annot-version=v4.1 ATGTCTTCTCTCGTAAAACGACTCCACCACCTATCCCCATGCCTGCAGTCCACCGCCCACCAGCTCCGCCAATTAAGAACCGGGGCCGGCCCAAACAGGC GGCGATCCAAGTCCCCTCCCTTTGCAGCCAAGAAGACTGATGAGAAATCGGACTGGTGGATAGTCGACGGCGAGATGCACGAGATAGGAGAACACGTGCC CCCACGTGAGCGATTTGTTATCCCTAGAGACAACGTCCCCAACAAGCGGCGAAAGCAACTTCGTGAACAGTTCATGCGCCGCACTCGCCTTGTTATCAAG GAATCAGAGCATGAACCTTGGTGCAAAAGATACATGGAACTATATCAGGAGCTTAGAGAGAATTGGGAGCGGCTATACTGGGATGAGGGCTATTCCAAGA AAATTGCGCGAGATCATGCAAATTATGAGTCTGCTGAGGATGATGATCAAGATTTTAACCCGTACAGGAGCAAGCGACCTGAACAGGTGAAGGACCAGGA TTTTGGGAGAAACAGGCAAGGTGATACATGGGAAAAGGTTGGCCAAATTCGAGATAAATTTGAATATGACAGAGAGAAAAGAATGAGGGAGAAAGCATTT GCGCCGATGAATAGAGGAACTTCTTTTGAGTTGCCTCATTCAAACACCCAGAATCGGCCATTTGACACTCAACGATACTTCCCTGATGAAGGGGACTCTT AA
AA sequence Show only first row Show all	>Potri.002G250500.2 pacid=42777369 polypeptide=Potri.002G250500.2.p locus=Potri.002G250500 ID=Potri.002G250500.2.v4.1 annot-version=v4.1 MSSLVKRLHHLSPCLQSTAHQLRQLRTGAGPNRRRSKSPPFAAKKTDEKSDWWIVDGEMHEIGEHVPPRERFVIPRDNVPNKRRKQLREQFMRRTRLVIK ESEHEPWCKRYMELYQELRENWERLYWDEGYSKKIARDHANYESAEDDDQDFNPYRSKRPEQVKDQDFGRNRQGDTWEKVGQIRDKFEYDREKRMREKAF APMNRGTSFELPHSNTQNRPFDTQRYFPDEGDS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07440			unknown protein		Potri.002G250500 [exp]	0	1
AT1G01730			unknown protein		Potri.015G145000 [exp]	2.00	0.8668
AT5G61190	C2H2ZnF		putative endonuclease or glyco...		Potri.017G091700 [exp]	6.00	0.8497
AT4G39470			Tetratricopeptide repeat (TPR)...		Potri.007G079200 [exp]	10.09	0.8928
					Potri.006G029500 [exp]	13.52	0.8618
AT5G46720			AIG2-like (avirulence induced ...		Potri.003G092600 [exp]	14.07	0.8481
AT5G22080			Chaperone DnaJ-domain superfam...		Potri.001G215800 [exp]	14.69	0.8326
AT1G73380			unknown protein		Potri.004G067200 [exp]	16.30	0.8516
AT5G16790		AtTHO7	Tho complex subunit 7/Mft1p (....		Potri.013G080200 [exp]	19.79	0.8314
AT4G12240	C2H2ZnF		zinc finger (C2H2 type) family...		Potri.003G114700 [exp]	19.97	0.8393
AT1G26665			Mediator complex, subunit Med1...		Potri.003G146900 [exp]	25.23	0.8182

Compare expression of checked genes

Potri.002G250500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.