Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56500 43 / 5e-06 serine-rich protein-related (.1) AT1G24577 40 / 2e-05 unknown protein AT1G67910 40 / 4e-05 unknown protein AT3G13227 40 / 9e-05 serine-rich protein-related (.1) AT5G55980 40 / 9e-05 serine-rich protein-related (.1) AT5G25280 40 / 0.0001 serine-rich protein-related (.1.2) AT5G20370 40 / 0.0002 serine-rich protein-related (.1) AT5G11090 39 / 0.0004 serine-rich protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G079200 [exp] 49 / 3e-08 AT1G67910 45 / 9e-08 unknown protein Potri.010G046700 [exp] 48 / 6e-08 AT1G67910 82 / 4e-22 unknown protein Potri.008G186200 [exp] 47 / 1e-07 AT1G67910 85 / 4e-23 unknown protein Potri.018G023300 [exp] 46 / 1e-06 AT5G11090 194 / 1e-62 serine-rich protein-related (.1) Potri.006G258600 [exp] 43 / 2e-05 AT5G25280 181 / 1e-57 serine-rich protein-related (.1.2) Potri.006G060700 [exp] 41 / 2e-05 AT5G11090 66 / 4e-14 serine-rich protein-related (.1) Potri.018G120300 [exp] 40 / 5e-05 AT5G11090 67 / 1e-14 serine-rich protein-related (.1) Potri.006G060800 [exp] 41 / 6e-05 AT5G25280 130 / 2e-37 serine-rich protein-related (.1.2) Potri.018G120400 [exp] 40 / 0.0002 AT5G11090 126 / 3e-36 serine-rich protein-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034901 [exp] 43 / 5e-06 AT1G67910 49 / 6e-09 unknown protein Lus10001946 [exp] 44 / 9e-06 AT5G11090 179 / 9e-57 serine-rich protein-related (.1) Lus10001928 [exp] 44 / 1e-05 AT5G11090 177 / 3e-56 serine-rich protein-related (.1) Lus10006660 [exp] 44 / 1e-05 AT5G25280 144 / 4e-43 serine-rich protein-related (.1.2) Lus10008808 [exp] 44 / 1e-05 AT5G25280 153 / 2e-46 serine-rich protein-related (.1.2) Lus10039998 [exp] 43 / 1e-05 AT5G25280 157 / 3e-48 serine-rich protein-related (.1.2) Lus10023632 [exp] 42 / 1e-05 AT1G67910 48 / 1e-08 unknown protein Lus10000442 [exp] 41 / 2e-05 AT1G67910 56 / 1e-11 unknown protein Lus10038100 [exp] 42 / 3e-05 AT5G25280 145 / 4e-43 serine-rich protein-related (.1.2) Lus10026701 [exp] 40 / 5e-05 AT1G67910 56 / 5e-12 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G250700.1 pacid=42777720 polypeptide=Potri.002G250700.1.p locus=Potri.002G250700 ID=Potri.002G250700.1.v4.1 annot-version=v4.1 ATGAAAATGATTGTAGCTGCTGATGCCGACGCTGGTTTTCCCAGCTCGAAAGATTCCGGCCCAGCTCCGGCAATGACTTTTTGGGCGAGTAAATGGAAGG GATGGCTTCCTCAGGTTGAGGGTTTGGCCAATGCAAGCATGAAAGTGAATGAAAACAAGCTAACTGTGGCCTCCAAAAAGACCTGCGTTTGTGCACCAAC TAGCCATGCTGGTTCATTCAGGTGCCATCTTCACCGAGCTACTAGAAGCACTGCTGCTCAAATGTCAGAGGAGTATAACAATGACAAGGAAAGTAGTGAA AATCTTGACTTCATGAAGATGATCCTGTATCGCAAGTTCTCCAACGAAAAACCTCAGTTATCAAGGTTTGGCAGGGCTGCTGCTGCTGCGGCTGTTAACA ATGCTTATAGCAATTCTAATTAA
AA sequence Show only first row Show all	>Potri.002G250700.1 pacid=42777720 polypeptide=Potri.002G250700.1.p locus=Potri.002G250700 ID=Potri.002G250700.1.v4.1 annot-version=v4.1 MKMIVAADADAGFPSSKDSGPAPAMTFWASKWKGWLPQVEGLANASMKVNENKLTVASKKTCVCAPTSHAGSFRCHLHRATRSTAAQMSEEYNNDKESSE NLDFMKMILYRKFSNEKPQLSRFGRAAAAAAVNNAYSNSN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G56500			serine-rich protein-related (....		Potri.002G250700 [exp]	0	1
AT3G55620		eIF6A, EMB1624	embryo defective 1624, eukaryo...		Potri.005G098700 [exp]	4.12	0.7298
AT1G23420	YABBY	INO, YAB4	INNER NO OUTER, Plant-specific...		Potri.008G189000 [exp]	12.96	0.6564
AT2G26680			unknown protein		Potri.014G017900 [exp]	15.74	0.6344
					Potri.005G149001 [exp]	15.87	0.6564
AT3G51980			ARM repeat superfamily protein...		Potri.001G072200 [exp]	17.83	0.6416
AT1G26690			emp24/gp25L/p24 family/GOLD fa...		Potri.008G090700 [exp]	21.44	0.6191
					Potri.004G194250 [exp]	23.23	0.6438
AT1G61566		RALFL9	ralf-like 9 (.1)		Potri.018G007701 [exp]	25.41	0.5794
AT1G59640	bHLH	ZCW32, bHLH031...	BIG PETAL UB, BIG PETAL P (.1....		Potri.010G040000 [exp]	25.80	0.5805	ZCW32.2
AT2G19690		PLA2-BETA	phospholipase A2-beta (.1.2)		Potri.006G149700 [exp]	28.46	0.6329

Compare expression of checked genes

Potri.002G250700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.