Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48500 100 / 1e-27 unknown protein AT5G18310 50 / 1e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G029600 [exp] 83 / 1e-20 AT5G18310 94 / 2e-24 unknown protein Potri.013G052600 [exp] 81 / 7e-20 AT5G18310 97 / 8e-26 unknown protein Potri.015G040500 [exp] 56 / 4e-11 AT5G18310 59 / 2e-12 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009584 [exp] 114 / 7e-33 AT5G48500 126 / 3e-37 unknown protein Lus10020403 [exp] 112 / 4e-32 AT5G48500 127 / 7e-38 unknown protein Lus10042520 [exp] 51 / 2e-08 AT5G18310 81 / 1e-19 unknown protein Lus10021984 [exp] 51 / 3e-08 AT5G18310 76 / 2e-17 unknown protein Lus10011841 [exp] 40 / 0.0002 AT3G07170 196 / 9e-61 Sterile alpha motif (SAM) domain-containing protein (.1) Lus10022776 [exp] 40 / 0.0004 AT3G25070 155 / 4e-47 RPM1 interacting protein 4 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G250800.1 pacid=42776964 polypeptide=Potri.002G250800.1.p locus=Potri.002G250800 ID=Potri.002G250800.1.v4.1 annot-version=v4.1 ATGGAAGATTATTATTATTCAAGGAGCCATGTACCAGCATTTGGAAGCTGGGACTGGAACAATGATATGCCTTTCACTCAGTGCTTTGAATCAGCCAGGC AAGCAGGTCTGCTTCGTTACAGTTACTCAGAAGATCGTGATCTCTATGTTGCTGGTGATCTCTATGAGAATGATGTTGTCACTCCTACCATGATCGTCGT TCCTCGCCGAAGGGAAAAAATGCGTCGCCCTCGTGCCAAAGAAGAGAAAAGGGAGCAAAGTTGGGCGGTGACAAGTGATGTAAAGGAATCGCCAAGTCCT CCTCCGATGTCGACCAGGCCAACACCTAAGCCAGTTGACGAGGACTTGTATAAAATCTCACCGGAGCTCCTTTATGCAAAAACCAAAAAGAGGGGAGGGC TGTGCTTCTTTTCAAGCTGCTTGATGCCCGCCTGTGCTCTTTGA
AA sequence Show only first row Show all	>Potri.002G250800.1 pacid=42776964 polypeptide=Potri.002G250800.1.p locus=Potri.002G250800 ID=Potri.002G250800.1.v4.1 annot-version=v4.1 MEDYYYSRSHVPAFGSWDWNNDMPFTQCFESARQAGLLRYSYSEDRDLYVAGDLYENDVVTPTMIVVPRRREKMRRPRAKEEKREQSWAVTSDVKESPSP PPMSTRPTPKPVDEDLYKISPELLYAKTKKRGGLCFFSSCLMPACAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G48500			unknown protein		Potri.002G250800 [exp]	0	1
AT5G51160			Ankyrin repeat family protein ...		Potri.014G050600 [exp]	2.44	0.9730
AT1G63310			unknown protein		Potri.001G452900 [exp]	8.48	0.9705
AT3G50160			Plant protein of unknown funct...		Potri.006G042300 [exp]	8.94	0.9661
AT5G41470			Nuclear transport factor 2 (NT...		Potri.002G070800 [exp]	9.32	0.9700
AT5G35740			Carbohydrate-binding X8 domain...		Potri.006G016800 [exp]	10.95	0.9690
AT1G63310			unknown protein		Potri.011G149100 [exp]	11.83	0.9699
AT3G15680			Ran BP2/NZF zinc finger-like s...		Potri.001G172700 [exp]	11.83	0.9441
AT3G20570		AtENODL9	early nodulin-like protein 9 (...		Potri.001G419200 [exp]	12.96	0.9681
AT1G09812			unknown protein		Potri.003G006900 [exp]	13.78	0.8595
AT1G54860			Glycoprotein membrane precurso...		Potri.005G034200 [exp]	16.30	0.9672

Compare expression of checked genes

Potri.002G250800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.