Plant FIBer expression Database

Potri.002G251400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G48470 529 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038234
[exp]
496 / 5e-176 AT5G48470 540 / 0.0 unknown protein
Lus10025865
[exp]
478 / 2e-159 AT5G48460 1013 / 0.0 Actin binding Calponin homology (CH) domain-containing protein (.1)
PFAM info
Representative CDS sequence
>Potri.002G251400.1 pacid=42777011 polypeptide=Potri.002G251400.1.p locus=Potri.002G251400 ID=Potri.002G251400.1.v4.1 annot-version=v4.1
ATGTTGCAGAGCAGCTTCTCCAGCATTCTCCCTTCCTCTCTGCCACGCACTCCTCTCTCTTCTCATAAACTCCTCATCTTCCCTTCACTTTCACTCACAC
ACTACCGGCAGCGGCGGCGGCAGCAGCAGCAGTTGCTGGTGTTGTGTGCCAGCAGCTATGAGGTGGGTGGGGGTTATTCAGACATGGAATCAAGCGTACA
AGAAGAAAACAAAAGTAGGAGAACCCAACAAGAATGGGACGAGAAACCAGACCCTTTTCAACATGAAGTTATTATTAAAGGTGGTGAACAGGTTATCTCT
GTCCTCCAAGAGATGATCACCCTCTTGGAAGACCTGAACATGGATGACGCTTCTGAGAAGGTGGCTGTCGAGTTGGTTGCGCATGGAGTGATAGGGAAAA
GAGTTGATGAGATGGAAGCGGGGTTTATGATGGCCCTAGATTATATGATTGAACTTGCAGAAAAGGATCAAGATGGAATGCGCAAGTCACTGTTGGAAGT
CATCAAGGAAACTGTATTGTCCCATCTTACAAAAAAATGCCCCCCGCATGTTCAAGTGATTGGCTTGCTTTGTAGAACTCCGCAGAAAGAAAGCAGACAT
GAATTATTACGTAGAGTTGCTGCTGGCGGTGGTGTCTTTGAAGGTGGTAAAGGCACCAAAGTTCATATTCCGGGGGCGAACCTGAACGATATAGCTAATC
AGGCTGATGATATACTTGAGACAATGGAAACCCGACCAGTTGTCCCAGATCGAAAACTACTTGCAAGGCTAGTTTTAATCAGAGAGGAAGCCAGGAACAT
GATGGGAGGTGGGATACTTGATGAGAGAAATGACCGTGGTTTTAAGACGCTTCCTGAATCCGAGGTGAATTTCATAGCCAAACTGGTAGCTTTGAAACCA
GGGAAAACTGTCCAGGAAATGATTAAAAATGTGATGCTAGGGAAAGATGAAGGTGCAGAAGATGCTGCCAGTGAGGAAGAGAACATTAACAGTGAAAGGA
TTTCGAGTGGAATTGCTGGAAGGGGAAGCGTTACAGGACGAAAACCACTTCCTGTGCGACCTGGCATGTTTCTTGAGACTGTCACCAAGGTCTTAGGCAG
TGTATATTCAGGAAATATCTCTGGCATTACTGCACAACATCTAGAATGGGTTCACCAAAAGACACTTCAAGTTCTCCAGGAAATAGCATACTAG
AA sequence
>Potri.002G251400.1 pacid=42777011 polypeptide=Potri.002G251400.1.p locus=Potri.002G251400 ID=Potri.002G251400.1.v4.1 annot-version=v4.1
MLQSSFSSILPSSLPRTPLSSHKLLIFPSLSLTHYRQRRRQQQQLLVLCASSYEVGGGYSDMESSVQEENKSRRTQQEWDEKPDPFQHEVIIKGGEQVIS
VLQEMITLLEDLNMDDASEKVAVELVAHGVIGKRVDEMEAGFMMALDYMIELAEKDQDGMRKSLLEVIKETVLSHLTKKCPPHVQVIGLLCRTPQKESRH
ELLRRVAAGGGVFEGGKGTKVHIPGANLNDIANQADDILETMETRPVVPDRKLLARLVLIREEARNMMGGGILDERNDRGFKTLPESEVNFIAKLVALKP
GKTVQEMIKNVMLGKDEGAEDAASEEENINSERISSGIAGRGSVTGRKPLPVRPGMFLETVTKVLGSVYSGNISGITAQHLEWVHQKTLQVLQEIAY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G48470 unknown protein Potri.002G251400
[exp]
0 1
AT4G29400 Protein of unknown function (D... Potri.014G148300
[exp]
1.00 0.9803
AT5G07900 Mitochondrial transcription te... Potri.014G133200
[exp]
2.44 0.9735
AT4G18520 Pentatricopeptide repeat (PPR)... Potri.005G170300
[exp]
5.19 0.9694
AT2G35490 Plastid-lipid associated prote... Potri.003G095900
[exp]
6.48 0.9641
AT1G36320 unknown protein Potri.002G091000
[exp]
6.92 0.9674
AT3G15360 ATHM4, ATM4, TR... ARABIDOPSIS THIOREDOXIN M-TYPE... Potri.001G401500
[exp]
7.48 0.9597
AT3G03630 CS26 cysteine synthase 26 (.1) Potri.019G045800
[exp]
8.48 0.9636
AT4G37380 Tetratricopeptide repeat (TPR)... Potri.007G050200
[exp]
8.83 0.9664
AT3G04890 Uncharacterized conserved prot... Potri.013G036500
[exp]
8.94 0.9538
AT5G62990 EMB1692 embryo defective 1692, Ubiquit... Potri.002G233900
[exp]
9.21 0.9669

Potri.002G251400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.