Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-TMKL1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24660 917 / 0 TMKL1 transmembrane kinase-like 1 (.1) AT3G56100 229 / 2e-65 IMK3, MRLK meristematic receptor-like kinase (.1) AT3G08680 221 / 4e-63 Leucine-rich repeat protein kinase family protein (.1.2) AT1G68400 214 / 2e-60 leucine-rich repeat transmembrane protein kinase family protein (.1) AT3G51740 216 / 4e-60 IMK2 inflorescence meristem receptor-like kinase 2 (.1) AT1G48480 209 / 1e-58 RKL1 receptor-like kinase 1 (.1) AT5G07620 199 / 8e-58 Protein kinase superfamily protein (.1) AT2G36570 206 / 2e-57 Leucine-rich repeat protein kinase family protein (.1) AT1G28440 208 / 1e-56 HSL1 HAESA-like 1 (.1) AT3G17840 199 / 4e-55 RLK902 receptor-like kinase 902 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G086100 [exp] 248 / 6e-73 AT5G16590 655 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) Potri.017G130600 [exp] 241 / 1e-70 AT5G16590 649 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) Potri.013G158800 [exp] 238 / 4e-69 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G131500 [exp] 234 / 9e-68 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.016G139200 [exp] 232 / 4e-67 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G062100 [exp] 225 / 4e-64 AT5G58300 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.006G117200 [exp] 224 / 5e-64 AT2G36570 806 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G183400 [exp] 226 / 1e-63 AT3G51740 903 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Potri.016G126300 [exp] 225 / 2e-63 AT3G51740 1038 / 0.0 inflorescence meristem receptor-like kinase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022818 [exp] 905 / 0 AT3G24660 883 / 0.0 transmembrane kinase-like 1 (.1) Lus10011886 [exp] 655 / 0 AT3G24660 649 / 0.0 transmembrane kinase-like 1 (.1) Lus10014236 [exp] 270 / 9e-80 AT3G51740 907 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10022679 [exp] 263 / 2e-77 AT3G51740 926 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10022678 [exp] 260 / 4e-76 AT3G51740 885 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10019113 [exp] 244 / 2e-71 AT5G58300 848 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10034446 [exp] 241 / 2e-70 AT5G58300 847 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10035012 [exp] 240 / 8e-70 AT5G58300 867 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10021673 [exp] 239 / 1e-69 AT5G58300 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10031350 [exp] 228 / 9e-66 AT1G48480 625 / 0.0 receptor-like kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.002G251700.1 pacid=42777275 polypeptide=Potri.002G251700.1.p locus=Potri.002G251700 ID=Potri.002G251700.1.v4.1 annot-version=v4.1 ATGGCGGTTTTGAAACTTTACTCTATCTACATTTTCTACACCTTAATCAGCATAAACTTCTCTGCTTCCCCCACTCAGTCTTTGTTACTTTCTGGTTCAA CAGATGTTGAGCTTCTGCTTGGAAAGATCAAAGCTTCACTGCAAGGTAACACTGAAAACCTCTTGCTCTCTTCATGGAACTCCTCTGTGCCTTTATGCCA ATGGAGAGGCCTCAAATGGGTCTTCTCTAATGGCTCTCCTCTCTCTTGTATTGACCTTTCAGCACCACAATGGACTAATCTTTCACTCTATAAAGACCCC TCTTTGCACCTTTTATCTCTACAGCTACCATCTGCTAATCTCACTGGTTCACTTCCTAGAGAGCTCGGTGGGTTCTCTATGCTTCAAAGTTTGTATCTTA ACATTAATTCACTGGGTGGAACCATCCCTCTTGAGCTTGGTTACAGCTCTTCACTCTCAGATATTGATTTGAGTGACAATGTGTTTAGTGGGGCTTTAGC TCCATCGGTGTGGAACTTGTGTGATAGATTAGTTTCACTCAGGCTTCATGGTAATTCACTTACCGGGTCTCTTCCTGAACCAGCATTGCCCAACACAACT TGCAATAATTTGCAGTTTCTTGATTTGGGTAGCAACAAGTTTTCAGGGAGTTTCCCTGAATTTGTTACTCGCTTTCAAGGTATAAACGAGCTTGATCTTT CCGGTAACATGTTTTCGGGTCCAATTCCTGAGACTTTAACTGGTTTAAAACTTGAAAAGTTGAATCTTTCACACAATAATTTCAGTGGAGTATTGCCTTT TTTTGGTGAATCGAAGTTTGGTGTGGAGGTTTTTGAAGGGAATGATCCCAGTCTTTGTGGGCTACCTTTAAGAAGTTGTAGTGGAAGTTCTAGATTGAGC CCGGGTGCAATTGCTGGCATTGTGATTGGATTAATGACTGGAGTTGTAGTTTTGGCCTCACTGTTAATTGGTTATATGCAAAACAAAAGGAGGAAGGGGA TGGGAGATAGCGACGATGACATGGAGGAGGAAAGCGGAGATGATGGAGTTGGTGGTGTTGGTGGCGTAGGTGGGGAAGGGAAACTAATTTTGTTTCAAGG CGGTGAGCATTTGACTTTGGAGGATGTGTTGAATGCGACAGGACAAGTTATGGAGAAAACAAGTTATGGGACTGTTTACAAGGCCAAGCTTGCTGATGGG GGGACAATTGCTTTGAGGTTGATGAGGGAAGGCAGTTGCAAGGATAGAAGTTCGTGTCTTCCAGTGATAAAGCAATTGGGGAAGATTCGGCATGACAGTT TACTTCCTCTGAGAGCTTTCTATCAGGGGAAGAGAGGGGAGAAGCTACTCATCTATGACTATCTTCCAAATAGAACCCTACACGACCTCTTACATGAGGC CAAAGCAGGAAAACCAGTGCTGAACTGGGCTAGAAGGCACAAGATTGCATTGGCTATAGCTAGAGGACTAGCATACCTTCATACAGGTCTTGAGACACCA ATTACCCATGGGAATGTCCGGTCAAAAAATGTGCTTGTGGATGAATTTTTTGTTGCTAGGCTTACCGAGTTTGGACTTGACAAGCTAATGATCCCAACAG TAGCTGATGAAATCGTGGCACTTGCGAAAACTGATGGCTACAAGGCACCGGAGCTTCAAAGGATGAAGAAATGCAATTCTAGGACAGACGTTTACGCATT TGGAATCCTTTTGCTGGAGATTCTGATAGGCAAGAAACCTGGAAAAAATGGAAGAAGCAACGATTTCGCAGACCTGCCTTCGATGGTGAAAGTCGCAGTC TTAGAGGAAACAACAATGGAGGTTTTTGATTTGGAGGTTTTAAAGGGGGTAAGGAGTCCAATGGAAGAAGGGTTAGTTCAGGCACTGAAACTTGCAATGG GGTGCTGCGCTCCAGTGGCATCGGTTCGACCAACCATGGATGAAGTTGTGAAGCAGTTGGAAGAGAATAGACCAAGAAACAGGTCTGCTTTGTACAGCCC TAATGAAACAAGGAGTGAAATTGGTACTCCCTTCTAA
AA sequence Show only first row Show all	>Potri.002G251700.1 pacid=42777275 polypeptide=Potri.002G251700.1.p locus=Potri.002G251700 ID=Potri.002G251700.1.v4.1 annot-version=v4.1 MAVLKLYSIYIFYTLISINFSASPTQSLLLSGSTDVELLLGKIKASLQGNTENLLLSSWNSSVPLCQWRGLKWVFSNGSPLSCIDLSAPQWTNLSLYKDP SLHLLSLQLPSANLTGSLPRELGGFSMLQSLYLNINSLGGTIPLELGYSSSLSDIDLSDNVFSGALAPSVWNLCDRLVSLRLHGNSLTGSLPEPALPNTT CNNLQFLDLGSNKFSGSFPEFVTRFQGINELDLSGNMFSGPIPETLTGLKLEKLNLSHNNFSGVLPFFGESKFGVEVFEGNDPSLCGLPLRSCSGSSRLS PGAIAGIVIGLMTGVVVLASLLIGYMQNKRRKGMGDSDDDMEEESGDDGVGGVGGVGGEGKLILFQGGEHLTLEDVLNATGQVMEKTSYGTVYKAKLADG GTIALRLMREGSCKDRSSCLPVIKQLGKIRHDSLLPLRAFYQGKRGEKLLIYDYLPNRTLHDLLHEAKAGKPVLNWARRHKIALAIARGLAYLHTGLETP ITHGNVRSKNVLVDEFFVARLTEFGLDKLMIPTVADEIVALAKTDGYKAPELQRMKKCNSRTDVYAFGILLLEILIGKKPGKNGRSNDFADLPSMVKVAV LEETTMEVFDLEVLKGVRSPMEEGLVQALKLAMGCCAPVASVRPTMDEVVKQLEENRPRNRSALYSPNETRSEIGTPF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G24660		TMKL1	transmembrane kinase-like 1 (....		Potri.002G251700 [exp]	0	1	Pt-TMKL1.1
AT4G20430			Subtilase family protein (.1.2...		Potri.001G440300 [exp]	1.00	0.9270
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Potri.016G035300 [exp]	2.82	0.8605	PIN2,Pt-PIN2.3
AT3G57880			Calcium-dependent lipid-bindin...		Potri.016G049100 [exp]	5.83	0.8778
AT5G22930			Protein of unknown function (D...		Potri.004G216100 [exp]	8.60	0.8244
AT1G68560		AXY3, TRG1, XYL...	thermoinhibition resistant ger...		Potri.010G125800 [exp]	9.00	0.8571	XYL1.1
AT3G62110			Pectin lyase-like superfamily ...		Potri.014G112100 [exp]	9.48	0.8528
AT2G01950		VH1, BRL2	VASCULAR HIGHWAY 1, BRI1-like ...		Potri.010G101100 [exp]	10.58	0.8337
AT1G62050			Ankyrin repeat family protein ...		Potri.004G013500 [exp]	10.67	0.8603
AT3G22960		PKP-ALPHA, PKP1	PLASTIDIAL PYRUVATE KINASE 1, ...		Potri.001G289300 [exp]	14.00	0.7936
AT2G34190			Xanthine/uracil permease famil...		Potri.011G068200 [exp]	15.19	0.8709

Compare expression of checked genes

Potri.002G251700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.