Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ABI3.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24650 499 / 2e-167 B3 SIS10, ABI3 SUGAR INSENSITIVE 10, ABSCISIC ACID INSENSITIVE 3, ABA INSENSITIVE 3, AP2/B3-like transcriptional factor family protein (.1) AT3G26790 135 / 6e-35 B3 FUS3 FUSCA 3, AP2/B3-like transcriptional factor family protein (.1) AT1G28300 121 / 1e-29 B3 LEC2 LEAFY COTYLEDON 2, AP2/B3-like transcriptional factor family protein (.1) AT2G30470 85 / 1e-16 B3 HSI2, VAL1 VP1/ABI3-LIKE 1, high-level expression of sugar-inducible gene 2 (.1) AT4G32010 79 / 8e-15 B3 HSL1, HSI2-L1, VAL2 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) AT4G21550 78 / 1e-14 B3 HSI2-L2, VAL3 VP1/ABI3-like 3 (.1) AT1G68840 57 / 1e-08 AP2_ERF EDF2, RAV2, RAP2.8, TEM2, AtRAV2 TEMPRANILLO 2, RELATED TO AP2 8, ETHYLENE RESPONSE DNA BINDING FACTOR 2, related to ABI3/VP1 2 (.1.2) AT4G01500 54 / 2e-07 B3 NGA4 NGATHA4, AP2/B3-like transcriptional factor family protein (.1) AT1G25560 54 / 3e-07 AP2_ERF EDF1, TEM1 TEMPRANILLO 1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, AP2/B3 transcription factor family protein (.1) AT3G25730 53 / 4e-07 AP2_ERF EDF3 ethylene response DNA binding factor 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G322700 [exp] 133 / 4e-34 AT3G26790 279 / 3e-93 FUSCA 3, AP2/B3-like transcriptional factor family protein (.1) Potri.017G061200 [exp] 132 / 7e-34 AT3G26790 288 / 8e-97 FUSCA 3, AP2/B3-like transcriptional factor family protein (.1) Potri.004G045800 [exp] 122 / 2e-29 AT1G28300 201 / 2e-60 LEAFY COTYLEDON 2, AP2/B3-like transcriptional factor family protein (.1) Potri.011G054000 [exp] 118 / 3e-28 AT1G28300 154 / 5e-43 LEAFY COTYLEDON 2, AP2/B3-like transcriptional factor family protein (.1) Potri.019G130300 [exp] 86 / 5e-17 AT2G30470 757 / 0.0 VP1/ABI3-LIKE 1, high-level expression of sugar-inducible gene 2 (.1) Potri.013G157500 [exp] 85 / 8e-17 AT2G30470 767 / 0.0 VP1/ABI3-LIKE 1, high-level expression of sugar-inducible gene 2 (.1) Potri.004G035300 [exp] 80 / 5e-15 AT4G32010 483 / 3e-158 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Potri.011G043600 [exp] 79 / 1e-14 AT4G32010 479 / 5e-157 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Potri.016G136500 [exp] 78 / 1e-14 AT4G32010 789 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011888 [exp] 461 / 7e-153 AT3G24650 312 / 6e-96 SUGAR INSENSITIVE 10, ABSCISIC ACID INSENSITIVE 3, ABA INSENSITIVE 3, AP2/B3-like transcriptional factor family protein (.1) Lus10022820 [exp] 325 / 1e-104 AT3G24650 313 / 1e-100 SUGAR INSENSITIVE 10, ABSCISIC ACID INSENSITIVE 3, ABA INSENSITIVE 3, AP2/B3-like transcriptional factor family protein (.1) Lus10012572 [exp] 135 / 7e-35 AT3G26790 259 / 4e-85 FUSCA 3, AP2/B3-like transcriptional factor family protein (.1) Lus10041521 [exp] 135 / 1e-34 AT3G26790 255 / 1e-83 FUSCA 3, AP2/B3-like transcriptional factor family protein (.1) Lus10015428 [exp] 111 / 1e-26 AT1G28300 163 / 1e-47 LEAFY COTYLEDON 2, AP2/B3-like transcriptional factor family protein (.1) Lus10011245 [exp] 92 / 1e-18 AT2G30470 399 / 1e-122 VP1/ABI3-LIKE 1, high-level expression of sugar-inducible gene 2 (.1) Lus10018440 [exp] 90 / 3e-18 AT4G32010 487 / 1e-158 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Lus10022741 [exp] 85 / 1e-16 AT4G32010 748 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Lus10025226 [exp] 79 / 1e-14 AT4G32010 808 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Lus10025142 [exp] 76 / 8e-14 AT4G32010 794 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [poplar] [flax] DNA_b-psBarrel PF02362 [poplar] [flax] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Potri.002G252000.2 pacid=42778679 polypeptide=Potri.002G252000.2.p locus=Potri.002G252000 ID=Potri.002G252000.2.v4.1 annot-version=v4.1 ATGAAGGGTTTGGAAGTGCATGGTGAAGATCGGCATGAAGGGGTTGAAAATGAAGGAAACCCTACTATCGGGTTTGATGCTATGGAGGAAGAGCAAGATA TCCTTGTTGAAGATAAGGAGATCTGGCTTGAGAGAGGGCAAGAAGATCTGTTACATGCGAGTGATGTTTCGATCTTCTATGAAGACTTCCCTCCACTCCC AGATTTTCCTTGCATGTCTTCTTCTTCCTCTTCTTCATCCACTCTGGCTCCTGTCAATGCCATAACTTCGTCGTCATCTTCCTCTTGTTCTTCGTCAGCA TCCTCCTCTTCTTCAGCGGCTGCTTGGGCTGTTTTGAAGTCAGAGGCAGAAGAAGATGTTGAAAAGAATCATCAACATCGTAATCACTGCTATCATCATA ACAATAATGATGATTTTAACAGTCAAGCGATGGATGATCCGGTGGATGTTTCTACAGCGGCCTTGTCTTCCACTTGCTCAATGGAGGTCCCTCAGCCTCC TGATCAAGCGATGGAATTAGGAATTGAATGCATGGACGTGATGGAGGATTTCGGATACATAGATCTGCTTGAGAGTAATGATTTCTTTGATCCTTCATCT ATATTTCATCCTGATGAAGGCATCTTTGAGGAGTTTCAAATGGAGCAAAACGAACCACAAGATCAGCTACAGCTTCAATATGATGAACAAGCTGGAAATG AAGAGATTACAAAAGGCAAAAATGATCAGGAGGCCGACCACCAAGGAGGAAGATCAGATGATCTGGCCATGGTGTTTTTAGACTGGCTCAAGAGCAACAA AGAAACTGTTTCAGCTGATGATTTGAGGAGAGTCAAACTCAAGAAGACCACTATAGAGTGTGCTGCTAGGCGTTTAGGTGGTGGTAAAGAAGGCATGAAA CAACTCTTGAAGCTCATTCTCCAATGGGTCCAAACGAATCATCTACAAAGAAGGCGCATGAGAGAATCATCCTCCAACGTTAATCTTCTCTATCCATACA ATCAAGACCCTCTTCAGAACCAAAACCCTAACCCTAATTCAAATCTCAACTGCAATCCTATACCAGCTGATCATTCAAACCCTTGCTTCACCCAGTCACC TTGGAACGTTGCACCCCCGCCATATCTTGCCGCAGATCCGGCAACGGTCATGCCAGGTTTTTCTCCCATGGTTGGATTTATGGGTGACCCGTTTTCAAAT GGATCTTCTAATATAAATGGCCATCCTTACGGGACTCCACAGGATTGCAATCACATGCTTCAGTCCTATCAAACATGGCCTCCCTCACAATTTCATTCGG CTTCACACTTCAACTCATTTGCAGACAATAATCTCCAGTCAGCTCAACCCCAGAATCCTGCTTTTACCGGGTATGGTAACCAGTACCCATATCAGTATGT TCCGGCTAATGGTGATAACAGGTTGACGAGGTTAGGTTCCTCAGCTACAAAAGAGGCAAGGAAGAAGAGAATGGCTAGGCAGAGAAGGTTTTTGTCTTAC CACAGGAATCAGAATCATCACAATATCCAGCACCAAAATCAAGGCGCTGGCGATCCGCATGAAAGGCTCTCAGATGATCCCAATGGTGCCCCAACAGGTC AATCTAATCCTGGTAGTTGGGTTTACTGGCCCACAGCTGCTGGTGGAGGTTCTGCTTCCACCACTGTGGATGCACCGGTGGATCGACCAGCCATGCAAGC ACAGACTAATAATCACCGGCAGGCCGCGGCCGAGAGGCGACAGGGATGGAAACCTGAGAAGAACCTGAGGTTTCTCCTTCAGAAAGTGTTGAAGCAGAGT GATGTGGGGAGTCTTGGGAGGATAGTGTTGCCAAAGAAAGAAGCAGAAACACATCTCCCGGAGCTAGAGGCAAGGGACGGAATTTCCATCGCCATGGAAG ATATAGGGACTTCTCGTGTTTGGAACATGCGTTATAGTTTCAGATTTTGGCCCAACAACAAAAGCAGGATGTATCTCCTCGAAAACACTGGAGATTTTGT GAGAACAAATGGACTCCAAGAAGGGGATTTCATAGTCATCTACTCGGATGTGAAATGTGGAAAATATTTGATCCGAGGAGTGAAGGTACGGCAACCTGCA GGGCCCAAACCAGAGAACAAGAGGGCAGGAAAATCGCAAAGAAACTCGCATGCAAATTGTCCAGCTGCTGCTAATAATGGCTCTGGCTCTCAAAAACAAA CAGTAAAGTGA
AA sequence Show only first row Show all	>Potri.002G252000.2 pacid=42778679 polypeptide=Potri.002G252000.2.p locus=Potri.002G252000 ID=Potri.002G252000.2.v4.1 annot-version=v4.1 MKGLEVHGEDRHEGVENEGNPTIGFDAMEEEQDILVEDKEIWLERGQEDLLHASDVSIFYEDFPPLPDFPCMSSSSSSSSTLAPVNAITSSSSSSCSSSA SSSSSAAAWAVLKSEAEEDVEKNHQHRNHCYHHNNNDDFNSQAMDDPVDVSTAALSSTCSMEVPQPPDQAMELGIECMDVMEDFGYIDLLESNDFFDPSS IFHPDEGIFEEFQMEQNEPQDQLQLQYDEQAGNEEITKGKNDQEADHQGGRSDDLAMVFLDWLKSNKETVSADDLRRVKLKKTTIECAARRLGGGKEGMK QLLKLILQWVQTNHLQRRRMRESSSNVNLLYPYNQDPLQNQNPNPNSNLNCNPIPADHSNPCFTQSPWNVAPPPYLAADPATVMPGFSPMVGFMGDPFSN GSSNINGHPYGTPQDCNHMLQSYQTWPPSQFHSASHFNSFADNNLQSAQPQNPAFTGYGNQYPYQYVPANGDNRLTRLGSSATKEARKKRMARQRRFLSY HRNQNHHNIQHQNQGAGDPHERLSDDPNGAPTGQSNPGSWVYWPTAAGGGSASTTVDAPVDRPAMQAQTNNHRQAAAERRQGWKPEKNLRFLLQKVLKQS DVGSLGRIVLPKKEAETHLPELEARDGISIAMEDIGTSRVWNMRYSFRFWPNNKSRMYLLENTGDFVRTNGLQEGDFIVIYSDVKCGKYLIRGVKVRQPA GPKPENKRAGKSQRNSHANCPAAANNGSGSQKQTVK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G24650	B3	SIS10, ABI3	SUGAR INSENSITIVE 10, ABSCISIC...		Potri.002G252000 [exp]	0	1	ABI3.1
					Potri.006G226200 [exp]	4.47	0.6882
AT5G49340		TBL4	TRICHOME BIREFRINGENCE-LIKE 4 ...		Potri.008G108500 [exp]	10.00	0.6229
AT5G55690	MADS		MADS-box transcription factor ...		Potri.001G329800 [exp]	26.60	0.6745
					Potri.003G079550 [exp]	27.20	0.6606
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Potri.014G193200 [exp]	40.07	0.5434
AT5G19040		ATIPT5	Arabidopsis thaliana ISOPENTEN...		Potri.004G150900 [exp]	40.98	0.5372
AT5G56200	C2H2ZnF		C2H2 type zinc finger transcri...		Potri.001G224600 [exp]	41.27	0.6600
AT4G27640			ARM repeat superfamily protein...		Potri.010G169800 [exp]	44.45	0.6364
AT5G05800			unknown protein		Potri.004G230401 [exp]	48.43	0.5487
AT2G46230			PIN domain-like family protein...		Potri.014G092600 [exp]	49.17	0.6175

Compare expression of checked genes

Potri.002G252000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.