Plant FIBer expression Database

Potri.002G252200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.002G252200.2 pacid=42777350 polypeptide=Potri.002G252200.2.p locus=Potri.002G252200 ID=Potri.002G252200.2.v4.1 annot-version=v4.1
ATGGCAAGGTGTTATTGCATTCTAGTTTTAATTGCTCTTGTTATTGCTCAAGCAAGTGCTAGGGACGTGCCCATAGACGCTGGCCTCGATGACCAAAAGA
ACTTCATCGCATATGGCGGTGTAGGTGGCTTTGCTGGAGTTGGTGGTCTGCCAAACCTTGGCGGTGTTGCTGGTGGCCTCGGTGGACTTGGTGGGGTTGG
TGGCTTGGGTGGAGACTCAGGTAGTGGTGGAGCTCTTGGTGGAGGTGTTGGTGGAGGCGTTGGTGTTGGTGGAGGCTTGGGCGGTGGCAGTGGAGATTGT
GCTGATGGTGATGCTGGCTCTCTCTTCCACCCTTGA
AA sequence
>Potri.002G252200.2 pacid=42777350 polypeptide=Potri.002G252200.2.p locus=Potri.002G252200 ID=Potri.002G252200.2.v4.1 annot-version=v4.1
MARCYCILVLIALVIAQASARDVPIDAGLDDQKNFIAYGGVGGFAGVGGLPNLGGVAGGLGGLGGVGGLGGDSGSGGALGGGVGGGVGVGGGLGGGSGDC
ADGDAGSLFHP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.002G252200
[exp]
0 1
AT4G15630 Uncharacterised protein family... Potri.008G205100
[exp]
2.44 0.9960
AT2G23180 CYP96A1 "cytochrome P450, family 96, s... Potri.015G086900
[exp]
2.64 0.9952
AT1G29670 GDSL-like Lipase/Acylhydrolase... Potri.004G064500
[exp]
3.31 0.9973
AT5G54630 C2H2ZnF zinc finger protein-related (.... Potri.004G030800
[exp]
6.32 0.9939
AT3G01550 ATPPT2 phosphoenolpyruvate (pep)/phos... Potri.001G347300
[exp]
7.34 0.9961
AT4G03270 CYCD6;1 Cyclin D6;1 (.1) Potri.004G032100
[exp]
8.30 0.9848
AT5G04820 OFP ATOFP13, OFP13 ARABIDOPSIS THALIANA OVATE FAM... Potri.006G205500
[exp]
10.77 0.9960
AT5G53390 O-acyltransferase (WSD1-like) ... Potri.019G070900
[exp]
11.61 0.9936
AT1G03940 HXXXD-type acyl-transferase fa... Potri.009G063500
[exp]
13.34 0.9800
AT1G33811 GDSL-like Lipase/Acylhydrolase... Potri.013G102400
[exp]
14.14 0.9954

Potri.002G252200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.