Plant FIBer expression Database

Potri.002G252400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.002G252400.1 pacid=42777565 polypeptide=Potri.002G252400.1.p locus=Potri.002G252400 ID=Potri.002G252400.1.v4.1 annot-version=v4.1
ATGGCAAGGAGTTACGTTTGTGTTGTGTTAGTGCTTGCTCTTGCAGCAGTGCACACTAGTGCTAGAGACGTGCCTACTGAAAAGAACATGCATGTTGCTA
GCACCAAAAATGCGCCAAGTGATGCTGGTCTCACTGACCAAAAGAACTTTGTTTCATATGGTGGTGTTGGTGGCTATTCTGGAATTGGTGCTGGTGGTCT
CCCATTTGGTGGCGTAGGGGGGATTGGTGGAGTTGCTCCTTTAGATGGTGGGTTCGGAGGACTGGGTGGTGGAGGCGGCTTGGGCGGCTTGGGTGGCGGT
ATTGGAGGCTTGGGTGGCGGTGTTGGAGGCTTGGGTGGCGGTGTTGGAGGCTTGGGTGGTGGTGTTGGAGGCTTGGGTGGTGTTGGCGGTGGTGTTGGTG
GCTTGGGTGGTGTTGGCGGTGGTGTTGGTGGCTTGGGTGGTGTTGGCGGTGGTGTTGGTGCTGGAGGCGGTGTAGGTGGGGGTGTTGGTGGTGGAGTAGG
CGGTGGTGTTGGTGGTGGAAGTGGTGTTCTTCCTTACCCTTGA
AA sequence
>Potri.002G252400.1 pacid=42777565 polypeptide=Potri.002G252400.1.p locus=Potri.002G252400 ID=Potri.002G252400.1.v4.1 annot-version=v4.1
MARSYVCVVLVLALAAVHTSARDVPTEKNMHVASTKNAPSDAGLTDQKNFVSYGGVGGYSGIGAGGLPFGGVGGIGGVAPLDGGFGGLGGGGGLGGLGGG
IGGLGGGVGGLGGGVGGLGGGVGGLGGVGGGVGGLGGVGGGVGGLGGVGGGVGAGGGVGGGVGGGVGGGVGGGSGVLPYP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.002G252400
[exp]
0 1
AT5G46880 HD HDG5, HB-7 HOMEODOMAIN GLABROUS 5, homeob... Potri.003G096000
[exp]
1.00 0.9800
AT2G18360 alpha/beta-Hydrolases superfam... Potri.004G155800
[exp]
2.23 0.9400
AT3G60120 BGLU27 beta glucosidase 27 (.1) Potri.005G059500
[exp]
2.82 0.9589
AT5G48270 Plant protein of unknown funct... Potri.010G047700
[exp]
4.00 0.9423
AT5G62230 ERL1 ERECTA-like 1 (.1.2) Potri.012G130400
[exp]
5.65 0.9367 ERL1.2
AT2G46810 bHLH bHLH070 basic helix-loop-helix (bHLH) ... Potri.014G106300
[exp]
6.00 0.9281
AT3G59420 ACR4 crinkly4 (.1) Potri.017G029900
[exp]
7.93 0.9363 Pt-ACR4.2
AT5G60900 RLK1 receptor-like protein kinase 1... Potri.001G014401
[exp]
9.32 0.9003
AT5G44680 DNA glycosylase superfamily pr... Potri.003G156500
[exp]
12.24 0.9282
AT2G42840 PDF1 protodermal factor 1 (.1) Potri.005G200900
[exp]
12.72 0.9373

Potri.002G252400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.