Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-RPT2.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29040 838 / 0 RPT2A regulatory particle AAA-ATPase 2A (.1) AT2G20140 836 / 0 RPT2b regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) AT5G58290 387 / 4e-132 RPT3 regulatory particle triple-A ATPase 3 (.1) AT5G19990 330 / 1e-109 ATSUG1, RPT6A regulatory particle triple-A ATPase 6A (.1) AT3G05530 330 / 1e-109 ATS6A.2, RPT5A regulatory particle triple-A ATPase 5A (.1) AT5G20000 330 / 1e-109 RPT6A AAA-type ATPase family protein (.1) AT1G09100 330 / 1e-109 RPT5B 26S proteasome AAA-ATPase subunit RPT5B (.1) AT5G43010 315 / 4e-104 RPT4A regulatory particle triple-A ATPase 4A (.1) AT1G45000 314 / 8e-104 AAA-type ATPase family protein (.1.2) AT1G53750 312 / 1e-102 RPT1A regulatory particle triple-A 1A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G194700 [exp] 853 / 0 AT4G29040 829 / 0.0 regulatory particle AAA-ATPase 2A (.1) Potri.016G028000 [exp] 387 / 3e-132 AT5G58290 781 / 0.0 regulatory particle triple-A ATPase 3 (.1) Potri.006G031000 [exp] 383 / 2e-130 AT5G58290 771 / 0.0 regulatory particle triple-A ATPase 3 (.1) Potri.005G025100 [exp] 334 / 3e-111 AT3G05530 795 / 0.0 regulatory particle triple-A ATPase 5A (.1) Potri.013G016800 [exp] 333 / 6e-111 AT3G05530 800 / 0.0 regulatory particle triple-A ATPase 5A (.1) Potri.010G098300 [exp] 332 / 1e-110 AT5G19990 768 / 0.0 regulatory particle triple-A ATPase 6A (.1) Potri.008G144100 [exp] 332 / 2e-110 AT5G19990 741 / 0.0 regulatory particle triple-A ATPase 6A (.1) Potri.004G158600 [exp] 319 / 9e-106 AT1G45000 752 / 0.0 AAA-type ATPase family protein (.1.2) Potri.002G031400 [exp] 319 / 1e-105 AT1G45000 745 / 0.0 AAA-type ATPase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011901 [exp] 833 / 0 AT2G20140 844 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10006976 [exp] 811 / 0 AT4G29040 828 / 0.0 regulatory particle AAA-ATPase 2A (.1) Lus10019995 [exp] 790 / 0 AT2G20140 827 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10022834 [exp] 722 / 0 AT2G20140 735 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10001313 [exp] 656 / 0 AT4G29040 673 / 0.0 regulatory particle AAA-ATPase 2A (.1) Lus10015524 [exp] 636 / 0 AT2G20140 659 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10031492 [exp] 335 / 2e-111 AT3G05530 820 / 0.0 regulatory particle triple-A ATPase 5A (.1) Lus10029887 [exp] 335 / 2e-111 AT3G05530 837 / 0.0 regulatory particle triple-A ATPase 5A (.1) Lus10017762 [exp] 333 / 1e-110 AT5G19990 797 / 0.0 regulatory particle triple-A ATPase 6A (.1) Lus10006854 [exp] 322 / 1e-107 AT5G58290 526 / 0.0 regulatory particle triple-A ATPase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF07724 [poplar] [flax] AAA_2 AAA domain (Cdc48 subfamily)
Representative CDS sequence Show only first row Show all	>Potri.002G252600.1 pacid=42776897 polypeptide=Potri.002G252600.1.p locus=Potri.002G252600 ID=Potri.002G252600.1.v4.1 annot-version=v4.1 ATGGGTCAGGGACCATCGGGCGGTCTGAATCGGCAAGGGCTACCAGGAGACAGAAAACAAGATGGAAGCGACAAGAAAGACAAGAAATTTGAGCCGGCGG CGCCACCAGCGCGGGTGGGCCGAAAGCAGCGGAAGCAGAAAGGGCCGGAGGCGGCTGCACGGCTGCCCACGGTAACGCCGCATACTAAGTGTAAGTTGAG ACTGCTGAAAATGGAGCGAATCAAGGATTATTTGTTGATGGAAGAAGAGTTTGTGGCAAATCAAGAGAGGTTGAAGCCACAAGAAGAGAAAGCTGAGGAG GATAGATCCAAGGTTGATGATTTGAGAGGTTCGCCTATGAGTGTGGGAAATTTGGAGGAGTTGATTGATGAGAATCATGCCATCGTTTCCTCTTCGGTTG GACCTGAGTACTATGTTGGGATTTTGTCTTTTGTTGATAAGGATCAACTCGAGCCTGGTTGTGCTATCTTGATGCATAATAAGGTTCTATCTGTTGTTGG GCTTCTTCAAGATGAAGTTGATCCAATGGTATCTGTGATGAAGGTGGAGAAGGCTCCATTAGAATCTTATGCTGACATAGGTGGTCTGGATGCCCAGATC CAGGAAATCAAAGAAGCAGTTGAGCTCCCACTGACTCATCCTGAATTATATGAAGATATTGGTATTAAGCCTCCTAAGGGAGTTATTTTGTATGGAGAGC CTGGGACTGGCAAGACCTTGCTTGCAAAGGCAGTGGCTAATTCAACATCAGCAACTTTCTTACGTGTTGTTGGAAGTGAATTGATTCAAAAGTACTTGGG AGATGGCCCAAAACTAGTGAGGGAGCTTTTCAGAGTTGCTGATGATCTCTCTCCATCTATTGTCTTCATTGATGAAATTGATGCTGTTGGTACAAAGAGG TATGATGCCCATTCAGGCGGTGAACGTGAAATTCAGAGGACCATGTTGGAACTACTGAACCAGTTAGATGGTTTTGATTCAAGAGGAGATGTTAAAGTGA TTCTTGCAACCAACCGAATTGAAAGCCTTGATCCTGCTTTGCTTCGGCCTGGTCGGATTGATAGGAAGATTGAATTCCCTCTTCCTGATATCAAAACAAG GAGGCGTATCTTCCAGATACACACAGCAAGAATGACATTAGCTGATGATGTCAACTTAGAAGAATTTGTTATGACCAAGGATGAGTTCTCTGGAGCAGAT ATAAAGGCAATATGCACTGAAGCTGGATTGCTTGCTTTACGAGAGCGGCGCATGAAGGTGACACATACCGACTTCAAGAAGGCCAAGGAAAAGGTGATGT TCAAGAAGAAAGAAGGGGTGCCTGAAGGACTCTACATGTGA
AA sequence Show only first row Show all	>Potri.002G252600.1 pacid=42776897 polypeptide=Potri.002G252600.1.p locus=Potri.002G252600 ID=Potri.002G252600.1.v4.1 annot-version=v4.1 MGQGPSGGLNRQGLPGDRKQDGSDKKDKKFEPAAPPARVGRKQRKQKGPEAAARLPTVTPHTKCKLRLLKMERIKDYLLMEEEFVANQERLKPQEEKAEE DRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQI QEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKR YDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTARMTLADDVNLEEFVMTKDEFSGAD IKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKKEGVPEGLYM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G29040		RPT2A	regulatory particle AAA-ATPase...		Potri.002G252600 [exp]	0	1	Pt-RPT2.2
AT3G27430		PBB1	N-terminal nucleophile aminohy...		Potri.004G066000 [exp]	1.41	0.8698	Pt-PBB1.2
AT5G05780		RPN8A, AE3, ATH...	ASYMMETRIC LEAVES ENHANCER 3, ...		Potri.008G065300 [exp]	2.00	0.8587
AT5G19990		ATSUG1, RPT6A	regulatory particle triple-A A...		Potri.010G098300 [exp]	2.82	0.7885	A1.4
AT1G56450		PBG1	20S proteasome beta subunit G1...		Potri.018G037700 [exp]	3.46	0.8458	Pt-PBG1.1
AT5G56350			Pyruvate kinase family protein...		Potri.001G001600 [exp]	4.00	0.7507
AT5G04430		BTR1S, BTR1L, B...	BINDING TO TOMV RNA 1S \(SHORT...		Potri.010G230500 [exp]	5.29	0.8005
AT3G18940			clast3-related (.1)		Potri.004G148700 [exp]	5.47	0.7769
AT5G17840			DnaJ/Hsp40 cysteine-rich domai...		Potri.013G066000 [exp]	6.00	0.7426
AT1G53750		RPT1A	regulatory particle triple-A 1...		Potri.006G216600 [exp]	6.24	0.8547	RPT1.5
AT1G14000		VIK	VH1-interacting kinase (.1)		Potri.010G164500 [exp]	6.32	0.7341

Compare expression of checked genes

Potri.002G252600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.