Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CPN60.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23990 995 / 0 HSP60-3B, HSP60 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) AT2G33210 966 / 0 HSP60-2 heat shock protein 60-2 (.1.2) AT3G13860 799 / 0 HSP60-3A heat shock protein 60-3A (.1) AT5G56500 508 / 4e-175 Cpn60beta3 chaperonin-60beta3, TCP-1/cpn60 chaperonin family protein (.1.2) AT3G13470 493 / 5e-169 Cpn60beta2 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) AT1G55490 488 / 3e-167 Cpn60beta1, LEN1, CPN60B LESION INITIATION 1, chaperonin-60beta1, chaperonin 60 beta (.1.2) AT2G28000 458 / 1e-155 Cpn60alpha1, SLP, CH-CPN60A, CPN60A SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) AT1G26230 449 / 1e-151 Cpn60beta4 chaperonin-60beta4, TCP-1/cpn60 chaperonin family protein (.1.2) AT5G18820 368 / 1e-120 Cpn60alpha2, EMB3007 embryo defective 3007, chaperonin-60alpha2, TCP-1/cpn60 chaperonin family protein (.1) AT5G20890 77 / 1e-14 TCP-1/cpn60 chaperonin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G054400 [exp] 1006 / 0 AT3G23990 1018 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Potri.003G173900 [exp] 1006 / 0 AT3G23990 1016 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Potri.003G039475 [exp] 766 / 0 AT3G13860 810 / 0.0 heat shock protein 60-3A (.1) Potri.003G222400 [exp] 505 / 8e-174 AT3G13470 1033 / 0.0 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) Potri.001G002500 [exp] 503 / 9e-173 AT3G13470 1030 / 0.0 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) Potri.009G009300 [exp] 490 / 3e-168 AT2G28000 919 / 0.0 SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) Potri.004G213400 [exp] 485 / 3e-166 AT2G28000 964 / 0.0 SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) Potri.010G135100 [exp] 430 / 1e-144 AT1G26230 813 / 0.0 chaperonin-60beta4, TCP-1/cpn60 chaperonin family protein (.1.2) Potri.015G122800 [exp] 407 / 1e-135 AT5G18820 821 / 0.0 embryo defective 3007, chaperonin-60alpha2, TCP-1/cpn60 chaperonin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011898 [exp] 1016 / 0 AT3G23990 987 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Lus10022832 [exp] 1016 / 0 AT3G23990 980 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Lus10011902 [exp] 1009 / 0 AT3G23990 964 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Lus10011770 [exp] 993 / 0 AT3G23990 994 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Lus10003791 [exp] 768 / 0 AT3G13860 867 / 0.0 heat shock protein 60-3A (.1) Lus10013404 [exp] 494 / 2e-169 AT3G13470 1037 / 0.0 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) Lus10010321 [exp] 495 / 3e-169 AT3G13470 1041 / 0.0 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) Lus10037386 [exp] 452 / 5e-153 AT2G28000 960 / 0.0 SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) Lus10030917 [exp] 427 / 5e-143 AT1G26230 863 / 0.0 chaperonin-60beta4, TCP-1/cpn60 chaperonin family protein (.1.2) Lus10041329 [exp] 399 / 5e-133 AT2G28000 845 / 0.0 SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00118 [poplar] [flax] Cpn60_TCP1 TCP-1/cpn60 chaperonin family
Representative CDS sequence Show only first row Show all	>Potri.002G252900.1 pacid=42778279 polypeptide=Potri.002G252900.1.p locus=Potri.002G252900 ID=Potri.002G252900.1.v4.1 annot-version=v4.1 ATGTATCGTTTTGCCTCTGGCCTCGCCTCCAAAGCCAGTGGGGTGGCTGGCAACAACGCCAAGCAGATTGGTAGTAGATTGGCTTGGAGGAGAAATTACG CGGCTAAAGACATCAAATTTGGTGTTGAAGCTCGTGCTTTGATGCTTAGAGGTGTTGAAGAGCTTGCTGATGCTGTTCAAGTTACCATGGGGCCTAAAGG ACGTAATGTAGTTTTGGAACAAAGCTGGGGGGCTCCTAAAGTGACAAAAGATGGTGTAACTGTAGCAAAGAGTATTGAATTCCAAGACAGAGTTAAGAAC ATTGGTGCTAGCCTTGTGAAGCAGGTTGCAAATGCTACTAATGATGTGGCAGGCGATGGTACCACATGTGCAACTGTCCTTACCCGTGCAATATTCGCTG AAGGATGCAAGTCTGTGGCAGCTGGAATGAATGCCATGGACCTTAGACGTGGCATCTCAATGGCAGTTGAAGCTGTTGTGACAAGCTTGAAGAGCAGAGC AAGGATGATCAGCACATCTGAGGAAATAGCCCAGGTTGGGACAATATCAGCAAATGGAGAAAGAGAGATTGGTGAACTTATAGCCAAGGCTATGGAGAAA GTTGGCAAAGAGGGTGTCATTACAATCTCTGATGGAAAAACAATGGATAATGAATTGGAGGTTGTTGAGGGAATGAAGCTGGACAGGGGCTATATATCCC CTTATTTTATCACCAATGACAAGAACCAGAAATGTGAATTAGAAGATCCTCTCATTTTAATTCACGAAAAGAAGATCTCAAGCATGAGTTCTACTGTCAA AGTTTTAGAATTGGCCTTGAAGAGGCAAAGACCTTTGCTGATTGTTGCTGAAGATTTGGAGGGTGAGGTACTCGCAACTCTCATTTTGAACAAGCTTCGT GCTGGAATCAAGGTTTGTGCCATCAAAGCACCTGGATTTGGAGAAAATAGGAAGGCCAGTCTGCAGGATCTTTCCATTCTCACAGGGGGTCAGGTTATAA CCGAAGAGCTCGGCTTGAACCTTGATAATGTGGGATTGGAAATGCTTGGCTCATGCAAAAAGGTGACGGTATCAAAGGATGACACTATTATTCTTGATGG GCTTGGTGACAAGAAAACCATTGAAGAAAGATGTGAGCAGTTGAGATCTGCTATCGGAACCAGCACCTCCGATTATGATAAAGAGAAGTTACAGGAGCGG CTAGCAAAACTTTCTGGTGGTGTTGCAGTTTTAAAGATTGGTGGAGCCAGCGAAGCTGAAGTTGGTGAGAAGAAAGACAGAGTTACTGATGCTCTGAATG CCACCAAGGCTGCTGTAGAGGAGGGCATTGTACCTGGTGGGGGTGTTGCACTTCTTTACGCCTCTAAGGAGCTTGACAAATTGCATACTGCAAATTTTGA TCAGAAGATCGGTGTCCAGATTATCCAGAATGCTCTCAAGACACCTGTTCACACTATTGCTAGCAATGCGGGGGTAGAGGGAGCAGTTGTTGTTGGCAAG CTATTGGAGCAGGACAACCCTGACCTTGGATATGATGCAGCCAAAGGCGAGTATGTAGACATGGTGAAATCAGGAATTATCGATCCTTTGAAAGTCATTA GAACAGCCTTGGTAGATGCTGCGAGTGTGTCTTCCTTGATGACTACAACTGAGGCAATTGTGTATGAACTTCCCAAGGTTGAAAAGGAAACCCCAGCAAG CAATGGCATGAGCGGCATGGGATTTTGA
AA sequence Show only first row Show all	>Potri.002G252900.1 pacid=42778279 polypeptide=Potri.002G252900.1.p locus=Potri.002G252900 ID=Potri.002G252900.1.v4.1 annot-version=v4.1 MYRFASGLASKASGVAGNNAKQIGSRLAWRRNYAAKDIKFGVEARALMLRGVEELADAVQVTMGPKGRNVVLEQSWGAPKVTKDGVTVAKSIEFQDRVKN IGASLVKQVANATNDVAGDGTTCATVLTRAIFAEGCKSVAAGMNAMDLRRGISMAVEAVVTSLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEK VGKEGVITISDGKTMDNELEVVEGMKLDRGYISPYFITNDKNQKCELEDPLILIHEKKISSMSSTVKVLELALKRQRPLLIVAEDLEGEVLATLILNKLR AGIKVCAIKAPGFGENRKASLQDLSILTGGQVITEELGLNLDNVGLEMLGSCKKVTVSKDDTIILDGLGDKKTIEERCEQLRSAIGTSTSDYDKEKLQER LAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYASKELDKLHTANFDQKIGVQIIQNALKTPVHTIASNAGVEGAVVVGK LLEQDNPDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVYELPKVEKETPASNGMSGMGF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G23990		HSP60-3B, HSP60	HEAT SHOCK PROTEIN 60-3B, heat...		Potri.002G252900 [exp]	0	1	Pt-CPN60.2
AT4G02930			GTP binding Elongation factor ...		Potri.014G138100 [exp]	1.73	0.9081	TUFA.4
AT3G62120			Class II aaRS and biotin synth...		Potri.014G112400 [exp]	3.16	0.8533
AT1G06220		GFA1, CLO, MEE5	MATERNAL EFFECT EMBRYO ARREST ...		Potri.018G114900 [exp]	5.19	0.8226
AT4G21130		EMB2271	EMBRYO DEFECTIVE 2271, Transdu...		Potri.005G061000 [exp]	5.91	0.8692
AT5G25757			RNA polymerase I-associated fa...		Potri.006G241300 [exp]	7.48	0.8855
AT3G03960			TCP-1/cpn60 chaperonin family ...		Potri.013G058500 [exp]	7.93	0.8576
AT3G13160			Tetratricopeptide repeat (TPR)...		Potri.004G029900 [exp]	8.06	0.8507
AT5G56680		SYNC1ARATH, SYN...	EMBRYO DEFECTIVE 2755, Class I...		Potri.006G153900 [exp]	10.09	0.8390	Pt-SYNC3.1
AT4G18030			S-adenosyl-L-methionine-depend...		Potri.001G146400 [exp]	11.31	0.7865
AT4G13850		ATGRP2, GR-RBP2	glycine rich protein 2, glycin...		Potri.001G319800 [exp]	11.61	0.8429

Compare expression of checked genes

Potri.002G252900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.