Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20190 2103 / 0 ATCLASP CLIP-associated protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011907 [exp] 2306 / 0 AT2G20190 2090 / 0.0 CLIP-associated protein (.1) Lus10022839 [exp] 1242 / 0 AT2G20190 1191 / 0.0 CLIP-associated protein (.1) Lus10022838 [exp] 883 / 0 AT2G20190 745 / 0.0 CLIP-associated protein (.1) Lus10011904 [exp] 114 / 4e-28 AT2G20190 96 / 9e-23 CLIP-associated protein (.1) Lus10029708 [exp] 71 / 4e-14 AT2G20190 69 / 7e-15 CLIP-associated protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF12348 [poplar] [flax] CLASP_N CLASP N terminal
Representative CDS sequence Show only first row Show all	>Potri.002G253200.1 pacid=42776898 polypeptide=Potri.002G253200.1.p locus=Potri.002G253200 ID=Potri.002G253200.1.v4.1 annot-version=v4.1 ATGGAGGAGGCGCTGGAACTGGCGCGCGCGAAGGACACGAAGGAGAGGATGGCAGGAGTCGAGAGGCTACACCAACTTCTTGAAGCTTGTAGAAAGAGTT TGAGTTCGTCCGAAACGACGTCGCTTGTCGATTGCTGCTTGGATCTTTTGAAAGACAACAATTTCAAGGTTTCTCAAGGTGCTTTACAGGCGTTGGCTTC TGCTGCTGTTTTGTCTGGTGACTACTTTAAGTTGCATTTCAATGCGCTTGTTCCTGCTGTTGTTGAACGCCTAGGTGACGGTAAACAGCCCGTTCGTGAC GCCGCTCGACGCCTCTTGCTCACTCTCATGGAGGTTTCTTCGCCTACAATAATTGTTGAGAGAGCTGGCTCATTTGCCTGGACACACAGAAGCTGGAGAG TTCGGGAAGAGTTTGCTCGAACAGTAACATCTGCAATTAATCTTTTTGCATCTACTGAGCTTCCTCTTCAGCGGGCTATTCTACCTCCTATTTTGCAGAT GTTGAATGACCCGAATCCTGGTGTTAGGGAAGCAGCTATATTATGCATCGAGGAGATGTACTCACAGGCCGGGCCCCAATTCCGTGACGAGCTTCATCGC CATCATCTTCCTAATTCCATGATGAAAGATATCAATGCCAGACTAGAGAGGATTGAACCACAAGTACGCCCTTCAGATGGACTTGGCGGTAACTTTGCTC CTGTTGAGATGAAGCCCACAAGCCTTCATTCCAAGAAAAGCAGTCCAAAAGCCAAAAGTTCCACGAGGGAGATATCTCTTTTTGGAGCGGAGAGTGATGT CACCGAGAAACCCATAGAGCCAATTAAAGTTTACTCAGAAAAGGAGCTAATTAGGGAATTTGAGAAGATTGCGGCTACCCTTGTTCCTGAAAAGGATTGG ACTATCCGCATAGCTGCCATGCAGAGAGTTGAAGGCCTTGTTTTGGGAGGTGCTACTGATTACCCATGTTTTCGGGGGCTTCTGAAGCAATTTGTTGGCC CTCTAAACACACAGTTATCTGATCGAAGGTCTAGCGTTGTGAAGCAGGCTTGCCATCTATTATGCTTTTTATCGAAGGATCTGTTGGGAGATTTTGAGGC ATGTGCCGAGATGTTCATTCCTGCCCTTTTCAAGCTCGTTGTGATTACTGTACTTGTAATTGCAGAATCTGCAGATAACTGCATAAAAACGATGTTGCGT AACTGTAAAGTTGCTCGTGTGCTTCCTCGCATAGCTGATTGTGCAAAGAATGACCGCGCTGCAGTACTCCGTGCAAGATGTTGCGAATATGCACTATTGA TACTTGAACATTGGCCCGATGCTCCTGAAATACAGCGATCTGCTGATCTCTATGAAGATCTGATAAGATGTTGTGTTGCAGACGCAATGAGCGAGGTGCG CTCAACTGCAAGGATGTGCTACAGAATGTTTGCAAAAACTTGGCCAGAGCGTTCCCGTCGTTTATTTATGTCCTTTGATCCTGTTATTCAACGGATTGTT AACGAAGAGGATGGAGGCTTGCACAGGAGACATGCATCTCCTTCCATCCGTGATAGAAGTGCTCAAACATCATTTACCCCTCAGGCATCTGCGGCTTCAC ATGTACCTGGATATGGAACTTCGGCTATTGTTGCAATGGATAGAACTTCAAGTTTATCCTCTGGGACATCTCTGTCTTCTGGTCTTTTGCTCTCACAAGC AAAGTCCCTTGGTAAAGGTACTGAACGTAGTCTGGAAAGTGTGTTGCACGCTAGTAAGCAGAAGGTCACTGCAATTGAAAGCATGCTTAGAGGTTTGGAA TTATCCGACAAACAAAATCCTTCAGCTCTCCGTTCATCAAGTTTGGATCTAGGAGTTGACCCTCCATCATCTCGTGATCCACCATTCCCTGCATCTGTTC CTGCCTCTAATCATCTCACAAACTCTTTGACAGCAGAATCAACTGCTTCTGGTATTGGTAAAGGCAGTAACCGCAATGGTGGCTTGGTCTTGTCTGATAT TATTACCCAAATTCAAGCTTCCAAAGATTCTGCTAAGCTATCATATCGGAATAATATGGCAGCCGAGTCTTTGCCAACATTTTCATCATATTCAACAAAG AGGATTTCTGAAAGAGGTTCAGTTGAAGAGGACAATGACATTAGGGAACCTAGGCGATTTGCGAACCCACATGTAGACAGGCAGTATATGGACACGCCTT ACAAAGATTTAAACTACAGGGATTCACATAGCAGTCACATCCCCAACTTCCAGAGACCACTTTTGAGAAAGCATGTGGCTGGACGAATGTCTGCGGGCAG GCGAAAGAGTTTTGATGATAGTCAACTCTCACTTGGAGAGGTGTCAAGTTATGTAGAAGGTCCAGCATCTCTCAGCGACGCATTGAGCGAGGGACTTAGT CCAAGTTCTGACTGGAATGCTAGGGTTGCTGCTTTCAATTACCTCCATTCTTTGCTGCAGCAAGGCCCAAAAGGTGTTCAAGAAGTAATTCAGAATTTTG AGAAGGTAATGAAGTTGTTTTTCCAGCATCTGGATGATCCGCATCATAAAGTTGCACAAGCAGCTCTCTCGACACTTGCAGATATTATTCCATCTTGCCG AAAGCCATTTGAGAGTTACATGGAACGGATCTTACCCCATGTTTTCTCCCGATTAATTGACCCAAAGGAGCTAGTCAGGCAACCTTGCTCCACAACTTTG GAAATTGTCAGCAAAACTTATGGGGTTGATATTCTTTTACCAGCATTGCTCCGTTCACTAGATGAGCAGAGGTCACCAAAAGCCAAATTGGCTGTTATTG AGTTTGCCCTCAGTTCATTTAACAAGCATGCAATGAACTCTGAAGGCTCTGGGAATACTGGCATTTTGAAGTTATGGCTTGCTAAGCTGACACCGTTAGT ACATGATAAAAATACTAAGCTCAAGGAAGCTGCTATTACTTGCATTATATCGGTCTATTCACACTTTGATTCCATAGCTGTCCTCAATTTCATTCTTAGT TTATCGGTTGAAGAACAAAATTCCTTGCGACGAGCCCTTAAACAGTACACTCCTCGTATTGAAGTGGACCTAATGAACTTTGTGCAGAGCAAGAAAGAGC GACAGCGATCTAAGTCCTCTTATGACCCATCTGATGTTGTTGGAACATCATCAGAAGAAGGATATATTGGTGCATCAAAGAAGAGTCACTATTTTGGAAG GTATTCTGGTGGTTCTGTTGATAGTGATGGCGGCAGGAAGTGGAGTTCTACCCAAGAATCAACCCTGATATCGGGAAGTATTGGCCAAGCAGCTCCTGAT GAAACTCAGGAGAACTTGTATCAGAATTTTGAGACTAGTTCTAATACTGATGTCTATAGTTCAAAAAATAGGGATTCGAATTATGTGGTTGGTTCTACCG GTCTGAACTTGGGATCCCGGCCTGGCCGGCTGGAAAACATGGACAATGGCCTTAACTTTGAAGGGCTGTTGACCCCAGGTATGGACATTAATGGATTGAT GAGTTCTGAACCTCTACGTGCTGCTGAAGGCTATGGGCATGACAATAATGTTCTTTCTGAGTTGGACCTTAATAATCATAAACCTGCAGCTGTGAAGATT AATTCTTTGGCTGACACTGGTCCTAGCATTCCTCAAATTCTTCATCTGATATGCAATGGTAATGATGAAAGCCCTACCTCAAGCAAGCGTGGTGCACTTC AGCAGTTAATTGAAGCTTCTATGGCTAACGATCCCTCTGTTTGGTCCAAATACTTCAATCAAATTTTAACGGCTGTACTGGAGGTGTTGGATGATTCTGA TTCATCAATCCGAGAACTTACTCTTTCATTGATTGTGGAAATGCTAAAAAATCAGAAAGATGCCATGGAAGATTCTATTGAGATTGCTATTGAGAAGCTG CTTCATGTTACAGAGGATATTGTTCCAAAAGTTTCCAATGAAGCCGAGCACTGCTTGACTGTTGCATTGTCTCAGTATGATCCATTCAGATGCTTAAGTG TGATTGTCCCTTTATTGGTTACTGAAGATGAGAAAACTCTTGTAACCTGCATAAACTGTTTAACTAAGCTTGTGGGTCGTCTTTCACAAGAGGAGCTGAT GGTCCAGTTACCATCATTTTTGCCCGCGCTTTTTGAAGCTTTTGGAAACCAGAGTGCTGATGTTCGCAAGACTGTGGTTTTCTGTCTGGTGGATATATAT ATCATGCTTGGAAAAGCATTTTTGCCGCACTTGGAAGGGCTTAACAGTACACAGCTGCGTTTGGTGACCATTTATGCTAATCGGATATCACAGGCAAGAA CAGGTACTGCAATAGATGCTAGCCATGATTAG
AA sequence Show only first row Show all	>Potri.002G253200.1 pacid=42776898 polypeptide=Potri.002G253200.1.p locus=Potri.002G253200 ID=Potri.002G253200.1.v4.1 annot-version=v4.1 MEEALELARAKDTKERMAGVERLHQLLEACRKSLSSSETTSLVDCCLDLLKDNNFKVSQGALQALASAAVLSGDYFKLHFNALVPAVVERLGDGKQPVRD AARRLLLTLMEVSSPTIIVERAGSFAWTHRSWRVREEFARTVTSAINLFASTELPLQRAILPPILQMLNDPNPGVREAAILCIEEMYSQAGPQFRDELHR HHLPNSMMKDINARLERIEPQVRPSDGLGGNFAPVEMKPTSLHSKKSSPKAKSSTREISLFGAESDVTEKPIEPIKVYSEKELIREFEKIAATLVPEKDW TIRIAAMQRVEGLVLGGATDYPCFRGLLKQFVGPLNTQLSDRRSSVVKQACHLLCFLSKDLLGDFEACAEMFIPALFKLVVITVLVIAESADNCIKTMLR NCKVARVLPRIADCAKNDRAAVLRARCCEYALLILEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTWPERSRRLFMSFDPVIQRIV NEEDGGLHRRHASPSIRDRSAQTSFTPQASAASHVPGYGTSAIVAMDRTSSLSSGTSLSSGLLLSQAKSLGKGTERSLESVLHASKQKVTAIESMLRGLE LSDKQNPSALRSSSLDLGVDPPSSRDPPFPASVPASNHLTNSLTAESTASGIGKGSNRNGGLVLSDIITQIQASKDSAKLSYRNNMAAESLPTFSSYSTK RISERGSVEEDNDIREPRRFANPHVDRQYMDTPYKDLNYRDSHSSHIPNFQRPLLRKHVAGRMSAGRRKSFDDSQLSLGEVSSYVEGPASLSDALSEGLS PSSDWNARVAAFNYLHSLLQQGPKGVQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDPKELVRQPCSTTL EIVSKTYGVDILLPALLRSLDEQRSPKAKLAVIEFALSSFNKHAMNSEGSGNTGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYSHFDSIAVLNFILS LSVEEQNSLRRALKQYTPRIEVDLMNFVQSKKERQRSKSSYDPSDVVGTSSEEGYIGASKKSHYFGRYSGGSVDSDGGRKWSSTQESTLISGSIGQAAPD ETQENLYQNFETSSNTDVYSSKNRDSNYVVGSTGLNLGSRPGRLENMDNGLNFEGLLTPGMDINGLMSSEPLRAAEGYGHDNNVLSELDLNNHKPAAVKI NSLADTGPSIPQILHLICNGNDESPTSSKRGALQQLIEASMANDPSVWSKYFNQILTAVLEVLDDSDSSIRELTLSLIVEMLKNQKDAMEDSIEIAIEKL LHVTEDIVPKVSNEAEHCLTVALSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMVQLPSFLPALFEAFGNQSADVRKTVVFCLVDIY IMLGKAFLPHLEGLNSTQLRLVTIYANRISQARTGTAIDASHD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20190		ATCLASP	CLIP-associated protein (.1)		Potri.002G253200 [exp]	0	1
AT1G19870		IQD32	IQ-domain 32 (.1)		Potri.002G025200 [exp]	1.41	0.8997
AT5G47820		FRA1	FRAGILE FIBER 1, P-loop contai...		Potri.014G024700 [exp]	2.82	0.8902
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.001G472800 [exp]	4.89	0.8634	WRKY2.2
AT2G22560			Kinase interacting (KIP1-like)...		Potri.005G147300 [exp]	5.91	0.8665
AT2G47500			P-loop nucleoside triphosphate...		Potri.014G125700 [exp]	11.48	0.8682
AT5G12870	MYB	ATMYB46	myb domain protein 46 (.1)		Potri.001G258700 [exp]	11.66	0.8600
AT5G15740		RRT1	O-fucosyltransferase family pr...		Potri.015G048100 [exp]	13.85	0.8500
AT5G57330			Galactose mutarotase-like supe...		Potri.006G165400 [exp]	20.66	0.8630
AT1G67510			Leucine-rich repeat protein ki...		Potri.008G176900 [exp]	21.74	0.8575
AT4G25230		RIN2	RPM1 interacting protein 2 (.1...		Potri.001G124000 [exp]	22.58	0.7719

Compare expression of checked genes

Potri.002G253200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.