Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28780 558 / 0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G18430 513 / 0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G04290 503 / 1e-179 ATLTL1, LTL1 Li-tolerant lipase 1 (.1) AT5G33370 498 / 7e-178 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT2G23540 244 / 1e-77 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G50400 241 / 1e-76 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G37690 239 / 2e-76 SGNH hydrolase-type esterase superfamily protein (.1) AT5G15720 238 / 2e-75 GLIP7 GDSL-motif lipase 7 (.1) AT2G04570 236 / 4e-75 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G42990 236 / 6e-75 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G024800 [exp] 539 / 0 AT5G33370 544 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G024600 [exp] 538 / 0 AT5G33370 568 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G024700 [exp] 536 / 0 AT5G33370 549 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.013G051100 [exp] 527 / 0 AT5G33370 563 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G024400 [exp] 526 / 0 AT3G04290 538 / 0.0 Li-tolerant lipase 1 (.1) Potri.013G051000 [exp] 520 / 0 AT3G04290 543 / 0.0 Li-tolerant lipase 1 (.1) Potri.017G130100 [exp] 250 / 2e-80 AT5G37690 526 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.004G086700 [exp] 245 / 2e-78 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.002G219700 [exp] 239 / 3e-76 AT2G42990 439 / 1e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003106 [exp] 507 / 0 AT3G04290 551 / 0.0 Li-tolerant lipase 1 (.1) Lus10003108 [exp] 363 / 1e-125 AT5G18430 372 / 4e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011279 [exp] 374 / 3e-118 AT5G20960 1315 / 0.0 ARABIDOPSIS THALIANA ALDEHYDE OXIDASE 1, aldehyde oxidase alpha, aldehyde oxidase 1 (.1.2) Lus10004774 [exp] 282 / 1e-94 AT5G18430 311 / 3e-106 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016775 [exp] 256 / 3e-82 AT2G23540 592 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003579 [exp] 259 / 6e-82 AT3G04290 248 / 2e-77 Li-tolerant lipase 1 (.1) Lus10022471 [exp] 253 / 2e-81 AT2G23540 589 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10005238 [exp] 244 / 1e-77 AT2G23540 369 / 2e-126 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016918 [exp] 244 / 1e-77 AT2G23540 381 / 6e-131 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10018641 [exp] 243 / 1e-77 AT5G37690 516 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF00657 [poplar] [flax] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Potri.002G253400.1 pacid=42778224 polypeptide=Potri.002G253400.1.p locus=Potri.002G253400 ID=Potri.002G253400.1.v4.1 annot-version=v4.1 ATGTCAATTCCTAGGATTTTTCTCATCACCACCCTGACTGTTGCCCTAGCAATGGCAATGGTTGCAACAATTGTACCTCAAGCAGAGGCAGCTCGTGCTT TCTTTGTGTTTGGTGACTCACTTGTTGACAGTGGCAACAACAATTACTTGGCCACTACTGCTCGTGCTGATTCTCCACCTTATGGCATTGATTATCCAAC CCACAGACCAACTGGCCGCTTCTCTAATGGCTTCAACTTCCCTGATATCATCAGTCAGTCAATGGGTTTAGAGCCAACATTGCCATACTTAAGTCCAGAA CTCAATGGACAAAGACTACTCAATGGTGCCAACTTTGCTTCTGCCGGAATTGGAATCCTCAATGACACCGGAATTCAATTTGTAAACATATTAAGAATGT TCAGGCAATTTCAGCTGTTTGAAGAATACCAGCAACGAGTCAGTGCAATTATAGGAACAGACCGGACACAGCAGTTAGTGAATAATGCCCTGGTCCTTAT AACACTTGGTGGTAATGACTTCGTTAACAACTATTTCTTGACACCATTCGCACCTAGAAGAAGACAATTCTCCCTTCCCGATTATTGCCGGTTTCTTGTC TCAGAGTATAGGAAACTCCTCATGAGGCTGTATGATTTGGGGGGCAGAAGGATCCTGGTGACTGGAACTGGACCATTGGGTTGTGTTCCTGCGGAGTTAG CCATGTCTGGAAGCACGAACGGAGAATGTGCACCGGAGCCGCAAAGAGCTGCGCAGATATTTAATCCTCAGCTCTTCCAAATGCTTCAGAATCTCAACAG AGAATTAGGCTCTGATGTTTTCATTACTGCTAATGCATTTGCAATGAATACTGACTTGATCAATAGTCCCCAAAGATTTGGCTTTGTTACATCAAAGGTA GCGTGCTGTGGCCAAGGTCTGTACAATGGACTCGGATTATGCACAGTGGTTTCGAACCTGTGTCCCAACAGGAACGTCTATGTATTCTGGGATGCTTTCC ATCCAACAGAAAGGGCTAACCGAGTCCTTGTGCAGCAGCTGATGACAGGGACTACCGAGTACATGAACCCGATGAACCTTAGCACCATCATGGCCCTGGA TGCCAAGCTCTAA
AA sequence Show only first row Show all	>Potri.002G253400.1 pacid=42778224 polypeptide=Potri.002G253400.1.p locus=Potri.002G253400 ID=Potri.002G253400.1.v4.1 annot-version=v4.1 MSIPRIFLITTLTVALAMAMVATIVPQAEAARAFFVFGDSLVDSGNNNYLATTARADSPPYGIDYPTHRPTGRFSNGFNFPDIISQSMGLEPTLPYLSPE LNGQRLLNGANFASAGIGILNDTGIQFVNILRMFRQFQLFEEYQQRVSAIIGTDRTQQLVNNALVLITLGGNDFVNNYFLTPFAPRRRQFSLPDYCRFLV SEYRKLLMRLYDLGGRRILVTGTGPLGCVPAELAMSGSTNGECAPEPQRAAQIFNPQLFQMLQNLNRELGSDVFITANAFAMNTDLINSPQRFGFVTSKV ACCGQGLYNGLGLCTVVSNLCPNRNVYVFWDAFHPTERANRVLVQQLMTGTTEYMNPMNLSTIMALDAKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G28780			GDSL-like Lipase/Acylhydrolase...		Potri.002G253400 [exp]	0	1
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.019G014398 [exp]	1.00	0.9995
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Potri.013G119800 [exp]	2.00	0.9989
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Potri.018G131400 [exp]	5.00	0.9974
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Potri.006G206800 [exp]	5.47	0.9970	CTS2.10
AT1G07650			Leucine-rich repeat transmembr...		Potri.011G073066 [exp]	5.47	0.9940
AT5G49040			Disease resistance-responsive ...		Potri.001G023600 [exp]	6.48	0.9966
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.019G008402 [exp]	6.92	0.9957
AT5G06270			unknown protein		Potri.004G200300 [exp]	8.24	0.9908
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.005G028200 [exp]	11.61	0.9840
AT1G56170	CCAAT	NF-YC2, ATHAP5B...	"nuclear factor Y, subunit C2"...		Potri.017G120000 [exp]	11.95	0.9912

Compare expression of checked genes

Potri.002G253400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.