Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28760 751 / 0 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) AT5G43880 478 / 2e-154 Protein of unknown function (DUF3741) (.1) AT2G20240 310 / 2e-92 Protein of unknown function (DUF3741) (.1) AT3G53540 185 / 8e-48 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G194600 [exp] 1253 / 0 AT4G28760 583 / 0.0 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.006G213700 [exp] 176 / 5e-45 AT3G53540 433 / 1e-136 unknown protein Potri.016G080200 [exp] 151 / 3e-37 AT3G53540 234 / 1e-64 unknown protein Potri.010G211700 [exp] 106 / 4e-23 AT2G39435 155 / 2e-40 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1.2) Potri.001G103400 [exp] 74 / 4e-13 AT2G45900 86 / 5e-17 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) Potri.014G084600 [exp] 60 / 7e-09 AT4G00440 395 / 4e-124 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Potri.002G160000 [exp] 53 / 1e-06 AT4G00440 351 / 6e-107 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Potri.015G135200 [exp] 48 / 4e-05 AT5G62170 239 / 2e-68 unknown protein Potri.016G095500 [exp] 45 / 0.0003 AT5G02390 189 / 9e-50 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011911 [exp] 643 / 0 AT4G28760 535 / 9e-179 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Lus10022843 [exp] 518 / 9e-173 AT4G28760 369 / 2e-116 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Lus10022842 [exp] 193 / 6e-55 AT4G28760 198 / 2e-57 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Lus10011912 [exp] 179 / 1e-51 AT4G28760 141 / 2e-39 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Lus10025296 [exp] 162 / 2e-40 AT3G53540 456 / 7e-146 unknown protein Lus10024434 [exp] 151 / 4e-37 AT3G53540 449 / 2e-144 unknown protein Lus10002008 [exp] 64 / 5e-10 AT1G63670 100 / 2e-21 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Lus10035490 [exp] 62 / 2e-09 AT1G63670 100 / 1e-21 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12552 [poplar] [flax] DUF3741 Protein of unknown function (DUF3741) PF14309 [poplar] [flax] DUF4378 Domain of unknown function (DUF4378) PF14383 [poplar] [flax] VARLMGL DUF761-associated sequence motif
Representative CDS sequence Show only first row Show all	>Potri.002G253600.6 pacid=42778734 polypeptide=Potri.002G253600.6.p locus=Potri.002G253600 ID=Potri.002G253600.6.v4.1 annot-version=v4.1 ATGAACGGGATGCAGTACAGAAAGGGTCAGAAAATAGAGAAACCATTTCCAGGATGCTTGGGCAGGATGGTGAATCTTTTTGATTTAAGCAATGGGGTCG CTGGAAACAGGCTGCTCACAGATAAGCCACATCATGATGGTTCTTCAATCTCAAGGAGTCAATCAGATGTGGCAAGGATGTTGAGTGTACCCTTTGGAGA TCAGGTTGAGGATAAAATGATTGTATCTGAGTTAAAGAGAAGCTCCTTGAATAAGAAAGCAAATGCAACACCTATGAAGACACTCATTGCCCAAGAAATG TCCAAAGAAGTGGAATCTAAGCATAATCCACCCAATTTGGTTGCCAAGTTGATGGGACTTGATTCCCTCCCTCACCAACAGCCTGTTGCAGCTGATGCAC AAAGAAGCCACTCTAGAGGTTATTCGAGGCGTTCTTTAAGTCACTCTGGGATATTTGTGGAGTCTTGGGATGAAGATCATAGTTGTTTGGACAAGCAGAT GCCTAGTGAAGGTCACGTGTGCCAAGAGCAAAGTGAATACAAAGATGTCTATGAAATCTGGCAGCAATCCCAAAAGACAATGGTGAGACACAGTTCACCT CAAAAACGAAATCACAATGAAAATGTAAATACAAAAAAGATGGCTCTTGTTCGCCAGAAGTTCATGGAAGCAAAACGTCTGTCAACAGATGAAAAGGGCC GCCAGTCCAAGGAATTCCAAGATGCACTAGAAGTGTTAAGTTCCAATAAAGATTTATTCCTCAAGTTTCTGCAGGAACCAAATTCATTGTTCTCTCAACA TCTGCATGACATGCAATCTATGCCTCCATCTCCTGAGACAAAGCACATCACAGTTCTTAGGCCTTCTAAGGTGGTTGATAATGAAAGGTTTGCTGGGCCA GGGAAGAAGAGTGATAAACCTACAAAGCAACAGGCACATACTGGGCAAGCTACTGGGTGGGAAAGCAATCTTGGATATTCTCCTGCCTTTCCCAATGAGA AGATTGTTGAATATCCTCCTGCTCAACCTACTCGAATAGTAGTATTGAAACCTAGCCCTGGGAAGATCCATGACATCAAGGCTCTGGTATCACCTCCCTC ATCACCACCAAGAATGTTACATGGTGAAGATTTTTATGATGAACCTGAAGATGTTGAGGGTCAGGAACCAAGAGAGGTGGCAAAGTTGATCACTCGGAAC ATGCGTGAAAACCTGATGGGCCACCGGAGGGATGAAACTCTTCTTTCTTCCGTGTATTCCAATGGCTACACTGGTGATGACAGTTCATTTAACAAATCAG TAAATGACTATGCAGTGGAAAATCTAAGTGATACGGAAATCATGTCACCAACTTCTAGACATTCATGGGATTACATCAATAGGTTTGATAGCCCCTACTC CACTTCCTCCTTCAGCCGTGCATCTTGTTCTCCAGAGTCATCTGTTTGCAGAGAAGCAAAGAAGCGACTTTCTGAAAGATGGGCAATGATGGCATCAAAT GGGAGAGCTCTGGAGCAAAAAAATGCCCGGAGAAGCTCTAGCACTTTGGGGGAGATGCTTGCGCTTTCGGATACAAAGAAATTTATGAGAGCTGAGGAAG AGGATAGTATTAAGGAACTACAACCAAGAGGATCTACCTCTTGCATCACTAGTCATTTAAATAAGGAAGATGGCACGGCTGATTCTCCTAGAACTCTTCT AAGGTCCAAGTCTTTGCCTGTCTCTACCACGGTGCATGGTGCTAGGCCCAATGTTGAAGTTTCACCCCCTGATGCTGGCAAAACTGAAGTTCCGAAGGAT CTGACAAGGGCAAAGAGCGTGAAATCTTCTCTGAAGGGGAAAGTTTCTAGTTTATTTTTCTCGAGGAACAAGAAACCAAGTAAAGATAAATCTGTTGCAT GTCAATCTAAAGATGAATTTCAGTCTGCCATCCCTGAAACCCCTAGTTTACCAATTCCTCTGACTGAAAAAGTTAGTGATGGTGCAGCTCAATGTACTAA TAACTCTGGCCATGAAAATTGTTCATCTCATGGTTTACATGCGTCAGCAGGCATACATACCTATCCAGATTTTATCAGCATGGAAACAAAACAAGACATT GTTTCTCATGAGGGAGGGCTATCTGTAACAAAGCCTGTGGTGCCTGGGAATATGAATGAGAATCAGGATCAGCCAAGTCCAATCTCAGTTTTAGAACCCC CATTTGAAGAGGATGACAACGCAATTCTGGAGGCTTCTGGCTTGATACAGAAGCCAGATTGTAGAGGAATAGAGGTGCCTCTTAAGTCTAACTTGATTGG TAAATCACCACCTATAGAATCAGTAGCTCGAACCCTAACATGGGATAATTCTTGTGCGGAGACAGCTAGTTCTTATCCACTAAAACCCACTCCCTCTCCG GTCTCCTTGGGTGCTGAGGAAGATGAAAAGTACTGGTTTTCCTTTGTCCAAACTCTACTAACAGCAGCTGGCCTTGATTGCGAAGTGCAATTAGATTCAT TTTTTTCCAGATGGCATTCACCTGAAAGCCCATTGGACCCATCATTGAGAGACAAATACGCAAATCCAAATGACAAGGAGCTTTTGCACGAGGCAAAGCG AAGGCAGAGACGATCGAATCAGAAACTTGTATTTGACAGTGTGAATGCAGCACTTGTTGAAATCACAGGTCATGGATCAGACAGGAGCACAAGGGCTATG ACGAGCAGTGGGGTACAAAACAGGTTGGTAGAGGATGCACAACCCATGGTAGCTGAATACGTGTGGGCTCAGATGAAGGAATGGTTTTGTAGTGATGTGA GATGTGCTTCTGGGGATGGTGGTGGGGACAGCAACAGCCTGGTGGTGGAGATGGTGGTGAGGAAGGAGGTGGTAGGGAAAGGGTGGATAGATAAGATGAG AGTGGAGTTAGATACTTTACAGAACGAAATAGAAGGAAAGCTGCTGGATGAACTTGTTGAGGAGACTGTCATTGATTTCGCAGGTAGGATGTGA
AA sequence Show only first row Show all	>Potri.002G253600.6 pacid=42778734 polypeptide=Potri.002G253600.6.p locus=Potri.002G253600 ID=Potri.002G253600.6.v4.1 annot-version=v4.1 MNGMQYRKGQKIEKPFPGCLGRMVNLFDLSNGVAGNRLLTDKPHHDGSSISRSQSDVARMLSVPFGDQVEDKMIVSELKRSSLNKKANATPMKTLIAQEM SKEVESKHNPPNLVAKLMGLDSLPHQQPVAADAQRSHSRGYSRRSLSHSGIFVESWDEDHSCLDKQMPSEGHVCQEQSEYKDVYEIWQQSQKTMVRHSSP QKRNHNENVNTKKMALVRQKFMEAKRLSTDEKGRQSKEFQDALEVLSSNKDLFLKFLQEPNSLFSQHLHDMQSMPPSPETKHITVLRPSKVVDNERFAGP GKKSDKPTKQQAHTGQATGWESNLGYSPAFPNEKIVEYPPAQPTRIVVLKPSPGKIHDIKALVSPPSSPPRMLHGEDFYDEPEDVEGQEPREVAKLITRN MRENLMGHRRDETLLSSVYSNGYTGDDSSFNKSVNDYAVENLSDTEIMSPTSRHSWDYINRFDSPYSTSSFSRASCSPESSVCREAKKRLSERWAMMASN GRALEQKNARRSSSTLGEMLALSDTKKFMRAEEEDSIKELQPRGSTSCITSHLNKEDGTADSPRTLLRSKSLPVSTTVHGARPNVEVSPPDAGKTEVPKD LTRAKSVKSSLKGKVSSLFFSRNKKPSKDKSVACQSKDEFQSAIPETPSLPIPLTEKVSDGAAQCTNNSGHENCSSHGLHASAGIHTYPDFISMETKQDI VSHEGGLSVTKPVVPGNMNENQDQPSPISVLEPPFEEDDNAILEASGLIQKPDCRGIEVPLKSNLIGKSPPIESVARTLTWDNSCAETASSYPLKPTPSP VSLGAEEDEKYWFSFVQTLLTAAGLDCEVQLDSFFSRWHSPESPLDPSLRDKYANPNDKELLHEAKRRQRRSNQKLVFDSVNAALVEITGHGSDRSTRAM TSSGVQNRLVEDAQPMVAEYVWAQMKEWFCSDVRCASGDGGGDSNSLVVEMVVRKEVVGKGWIDKMRVELDTLQNEIEGKLLDELVEETVIDFAGRM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G28760			Protein of unknown function (D...		Potri.002G253600 [exp]	0	1
AT5G58300			Leucine-rich repeat protein ki...		Potri.019G131500 [exp]	4.47	0.8058
AT1G04160		XI-B, XI-8, ATX...	MYOSIN XI-8, ARABIDOPSIS THALI...		Potri.002G254300 [exp]	6.16	0.8168	XIB.1
AT5G05170		IXR1, CEV1, ATH...	ISOXABEN RESISTANT 1, CONSTIT...		Potri.016G054900 [exp]	8.48	0.8108	Pt-CESA4.2
AT1G63430			Leucine-rich repeat protein ki...		Potri.001G106600 [exp]	12.24	0.8152
AT1G69910			Protein kinase superfamily pro...		Potri.010G035300 [exp]	12.48	0.7582
AT4G33650		APEM1, DRP3A, A...	ABERRANT PEROXISOME MORPHOLOGY...		Potri.007G118300 [exp]	13.03	0.7843
AT5G45780			Leucine-rich repeat protein ki...		Potri.011G068700 [exp]	13.85	0.8051
AT1G62870			unknown protein		Potri.003G115900 [exp]	13.85	0.7728
AT4G39350		ATH-A, CESA2, A...	cellulose synthase A2 (.1)		Potri.002G066600 [exp]	17.23	0.7290
AT4G22130		SRF8	STRUBBELIG-receptor family 8 (...		Potri.004G005301 [exp]	21.49	0.7419

Compare expression of checked genes

Potri.002G253600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.