Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28720 694 / 0 YUC8 YUCCA 8, Flavin-binding monooxygenase family protein (.1) AT5G43890 652 / 0 YUCCA5, SUPER1, YUC5 YUCCA5, SUPPRESSOR OF ER 1, Flavin-binding monooxygenase family protein (.1) AT1G04180 650 / 0 YUC9 YUCCA 9 (.1) AT1G04610 630 / 0 YUC3 YUCCA 3 (.1) AT2G33230 603 / 0 YUC7 YUCCA 7 (.1) AT5G25620 508 / 4e-180 YUC6 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) AT4G32540 495 / 5e-175 YUC1, YUC YUCCA 1, YUCCA, Flavin-binding monooxygenase family protein (.1) AT4G13260 494 / 1e-174 YUC2 YUCCA2, Flavin-binding monooxygenase family protein (.1) AT5G11320 494 / 2e-174 YUC4 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) AT1G48910 371 / 1e-126 YUC10 YUCCA 10, Flavin-containing monooxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G174600 [exp] 689 / 0 AT1G04610 686 / 0.0 YUCCA 3 (.1) Potri.010G062400 [exp] 649 / 0 AT1G04610 657 / 0.0 YUCCA 3 (.1) Potri.006G243400 [exp] 531 / 0 AT5G25620 608 / 0.0 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.018G036800 [exp] 527 / 0 AT5G25620 576 / 0.0 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.006G248200 [exp] 507 / 9e-180 AT5G11320 598 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Potri.007G028200 [exp] 496 / 2e-175 AT5G25620 495 / 5e-175 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.018G033200 [exp] 493 / 3e-174 AT5G11320 546 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Potri.005G111800 [exp] 374 / 1e-127 AT1G21430 425 / 4e-148 Flavin-binding monooxygenase family protein (.1) Potri.005G186100 [exp] 372 / 4e-127 AT1G21430 448 / 2e-157 Flavin-binding monooxygenase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022851 [exp] 739 / 0 AT4G28720 666 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Lus10011274 [exp] 682 / 0 AT4G28720 643 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Lus10023695 [exp] 644 / 0 AT1G04610 692 / 0.0 YUCCA 3 (.1) Lus10035244 [exp] 630 / 0 AT1G04610 692 / 0.0 YUCCA 3 (.1) Lus10043142 [exp] 572 / 0 AT1G04610 599 / 0.0 YUCCA 3 (.1) Lus10007671 [exp] 499 / 7e-176 AT4G13260 518 / 0.0 YUCCA2, Flavin-binding monooxygenase family protein (.1) Lus10013125 [exp] 495 / 5e-175 AT5G11320 579 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Lus10008092 [exp] 491 / 3e-173 AT5G11320 575 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Lus10011093 [exp] 484 / 2e-170 AT4G13260 566 / 0.0 YUCCA2, Flavin-binding monooxygenase family protein (.1) Lus10023637 [exp] 478 / 2e-168 AT4G13260 542 / 0.0 YUCCA2, Flavin-binding monooxygenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13738 [poplar] [flax] Pyr_redox_3 Pyridine nucleotide-disulphide oxidoreductase
Representative CDS sequence Show only first row Show all	>Potri.002G254200.1 pacid=42779648 polypeptide=Potri.002G254200.1.p locus=Potri.002G254200 ID=Potri.002G254200.1.v4.1 annot-version=v4.1 ATGGAGAATATGTTTCGCTTAGCTGATCATGAAGATTTCTTCTCTAGAAGATGCATTTGGGTTAATGGTCCGGTCATAGTTGGTGCCGGACCATCAGGGC TAGCCACGGCTGCTTGCCTTAGAGATCAAGGCGTGCCCTTCGCTGTTCTTGAAAAAGAAGACTGCATAGCATCTTTGTGGCAAAAACGCACCTACGACAG GCTTAAACTTCACCTCCCTAAGCAATTCTGCCAGCTCCCTAAACTCCCATTTCCCGAGGATTTCCCCGAGTACCCTACAAAGAAACAGTTCGTTGAGTAC CTTGAATCATACGCAAAGCACTTTGAGATCAACCCAAAATTCAATGAGTATGTTCAGTCAGCAAGGTACGATGAGACCAGTGGTTTGTGGAGGGTCAAGA CAGTTTCCACAAGCGGCTCAAACCGTACTGAAGTTGAGTACATTTGCCGCTGGCTTGTTGTGGCCACCGGAGAGAATGCAGAGTGTGTAATGCCTGAGAT TGAAGGATTGGCTGAGTTCGGTGGTGAGGTTATGCATGCTTGCCAATATAAATCCGGCGAGAAATTCAGCGGGAAGAACGTACTTGTTGTCGGCTGTGGC AATTCTGGCATGGAAGTTTCTCTCGATCTTTGCAACTACAACGCTTCTCCATCAATGGTGGTTCGCAGCTCGGTTCATGTTTTGCCAAGAGAAATCATGG GCAAATCAACCTTTGAATTGGCTGTTTTGTTGATGAGTTGGCTACCCCTTTGGCTAGTTGACAAGCTCATGCTGATTATGGCATGGTTGGTGCTAGGAAA CACTGACAAGTATGGTCTAAAGAGGCCATCTATGGGTCCATTGACACTCAAGAACACCATGGGCAAGACCCCTGTACTGGACATTGGTGCATTGGAGAAA ATCAGATCTGGAGACATTAACGTGGTTCCTGGAATCAAGAGGTTTTCACGTGGTCAAGTTGAGCTTGTCAATGGTGAAATTCTTGATATAGACTCAGTTA TTTTGGCTACTGGATACCGCAGCAATGTCCCCTATTGGCTTCAGGAAGGTGAATTCTTCTCCAAAAATGGGTTCCCAAAGGCACCATTCCCAAATGGCTG GAAAGGAAATGCCGGTCTCTATGCTGTTGGGTTCACAAGGAAAGGGCTCTCTGGTGCATCCTCTGATGCCATTAGAATTGCACAAGATATTGGCAAGGTT TGGAAAGAGGAAACTAAGCAAACCAAGAGGGCAACAGCTTGCCATAGACGTTGCATCTCACAGTTTTAA
AA sequence Show only first row Show all	>Potri.002G254200.1 pacid=42779648 polypeptide=Potri.002G254200.1.p locus=Potri.002G254200 ID=Potri.002G254200.1.v4.1 annot-version=v4.1 MENMFRLADHEDFFSRRCIWVNGPVIVGAGPSGLATAACLRDQGVPFAVLEKEDCIASLWQKRTYDRLKLHLPKQFCQLPKLPFPEDFPEYPTKKQFVEY LESYAKHFEINPKFNEYVQSARYDETSGLWRVKTVSTSGSNRTEVEYICRWLVVATGENAECVMPEIEGLAEFGGEVMHACQYKSGEKFSGKNVLVVGCG NSGMEVSLDLCNYNASPSMVVRSSVHVLPREIMGKSTFELAVLLMSWLPLWLVDKLMLIMAWLVLGNTDKYGLKRPSMGPLTLKNTMGKTPVLDIGALEK IRSGDINVVPGIKRFSRGQVELVNGEILDIDSVILATGYRSNVPYWLQEGEFFSKNGFPKAPFPNGWKGNAGLYAVGFTRKGLSGASSDAIRIAQDIGKV WKEETKQTKRATACHRRCISQF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G28720		YUC8	YUCCA 8, Flavin-binding monoox...		Potri.002G254200 [exp]	0	1
AT1G48960			Adenine nucleotide alpha hydro...		Potri.012G059100 [exp]	1.73	0.8892
AT1G28130		GH3.17	Auxin-responsive GH3 family pr...		Potri.003G161300 [exp]	5.65	0.8950	8
AT5G50760			SAUR-like auxin-responsive pro...		Potri.001G060400 [exp]	6.32	0.8501
AT3G09390		ATMT-K, ATMT-1,...	ARABIDOPSIS THALIANA METALLOTH...		Potri.013G131200 [exp]	7.41	0.8958
AT2G38870			Serine protease inhibitor, pot...		Potri.016G078900 [exp]	14.89	0.8167
AT5G50610			unknown protein		Potri.003G168200 [exp]	16.73	0.8754
AT5G04980			DNAse I-like superfamily prote...		Potri.010G247800 [exp]	18.97	0.8666
AT5G14020			Endosomal targeting BRO1-like ...		Potri.017G062000 [exp]	25.69	0.8689
AT5G58860		CYP86A1	"cytochrome P450, family 86, s...		Potri.001G249700 [exp]	26.32	0.8651	CYP86.5
AT3G22060			Receptor-like protein kinase-r...		Potri.007G120300 [exp]	29.58	0.8715

Compare expression of checked genes

Potri.002G254200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.