Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	XIB.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04160 2412 / 0 XI-B, XI-8, ATXIB, XIB MYOSIN XI-8, ARABIDOPSIS THALIANA MYOSIN XI B, myosin XI B (.1) AT5G43900 2405 / 0 XI-6, XI-2, ATMYA2, MYA2 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) AT4G28710 2337 / 0 ATXIH, XIH MYOSIN XI H, Myosin family protein with Dil domain (.1) AT2G20290 2085 / 0 ATXIG, XIG MYOSIN XI G, myosin-like protein XIG (.1) AT1G54560 2044 / 0 PCR1, ATXIE, XIE MYOSIN XI E, Myosin family protein with Dil domain (.1) AT5G20490 2028 / 0 XI-17, ATXIK, XIK MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) AT1G08730 1988 / 0 PCR43, ATXIC, XIC MYOSIN XI C, Myosin family protein with Dil domain (.1) AT1G17580 1912 / 0 XI-1, ATMYA1, MYA1 MYOSIN XI 1, ARABIDOPSIS MYOSIN 1, myosin 1 (.1) AT2G31900 1873 / 0 ATMYO5, PCR11, ATXIF, XIF MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) AT4G33200 1594 / 0 XI-15, ATXI-I, XI-I MYOSIN XI-15, MYOSIN XI I, myosin, putative (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G174500 [exp] 2389 / 0 AT5G43900 2206 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Potri.006G145700 [exp] 2092 / 0 AT5G20490 2580 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Potri.001G199200 [exp] 2079 / 0 AT5G20490 2448 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Potri.013G043900 [exp] 2056 / 0 AT1G54560 2512 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Potri.019G013800 [exp] 2050 / 0 AT1G54560 2616 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Potri.001G233100 [exp] 1978 / 0 AT2G31900 2385 / 0.0 MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) Potri.009G025300 [exp] 1972 / 0 AT2G31900 2363 / 0.0 MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) Potri.006G220000 [exp] 1628 / 0 AT4G33200 2352 / 0.0 MYOSIN XI-15, MYOSIN XI I, myosin, putative (.1.2.3) Potri.002G041800 [exp] 1341 / 0 AT1G08730 1447 / 0.0 MYOSIN XI C, Myosin family protein with Dil domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022850 [exp] 2649 / 0 AT5G43900 2380 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10005521 [exp] 2070 / 0 AT1G54560 2686 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Lus10021570 [exp] 2046 / 0 AT5G20490 2587 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Lus10003315 [exp] 2014 / 0 AT5G20490 2479 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Lus10032597 [exp] 1950 / 0 AT5G43900 1925 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10017160 [exp] 1924 / 0 AT5G20490 2476 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Lus10023696 [exp] 1826 / 0 AT5G43900 1841 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10009791 [exp] 1484 / 0 AT1G04160 2103 / 0.0 MYOSIN XI-8, ARABIDOPSIS THALIANA MYOSIN XI B, myosin XI B (.1) Lus10043153 [exp] 1321 / 0 AT5G43900 1250 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10014753 [exp] 1183 / 0 AT3G58160 1289 / 0.0 MYOSIN XI-16, MYOSIN A3, MYOSIN XI J, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF00612 [poplar] [flax] IQ IQ calmodulin-binding motif CL0220 [poplar] [flax] PF01843 [poplar] [flax] DIL DIL domain
Representative CDS sequence Show only first row Show all	>Potri.002G254300.1 pacid=42778810 polypeptide=Potri.002G254300.1.p locus=Potri.002G254300 ID=Potri.002G254300.1.v4.1 annot-version=v4.1 ATGGCCTCTGCTGCCAGTCTGGTGGTTGGATCTCTTGTTTGGCTGGAAGACCCTGATGAAGCTTGGATAGATGGTGAAGTTGTGGAGATAAACAAAGAAG ACATTAAGGTCCTCTGCACGTCTGGAAAGACGGTCACTGTCAAGGCTTCCAAAACATACCCTAAGGATGCTGAAGCCCCTCCATGTGGAGTGGATGACAT GACAAAACTGGCTTATCTGCATGAACCAGGTGTCCTACAGAATTTGAGATCGAGATATGACATGAACGAAATTTATACTTACGTTGGGAATATATTGATT GCTGTGAACCCTTTTACGAGGCTACCACATCTGTATAATAGTCACATGATGGCCCAATATAAAGGGGCAAGCTTTGGTGAGCTGAGCCCACACCCTTTTG CTGTTGCAGATGCTTCATACAGACTAATGATGAATGAAGGAATAAGCCAGTCAATTTTAGTTAGTGGTGAGAGTGGTGCTGGTAAAACGGAAAGCACAAA ATTGCTTATGCGCTACCTTGCTTACATGGGAGGGAGAGCTGCAACTGAGGGGAGGACTGTTGAGCAGCAAGTCCTGGAGTCTAATCCTGTTCTGGAAGCA TTTGGTAATGCAAAGACTGTTAGAAACAATAATTCAAGTCGTTTTGGTAAGTTCGTGGAGATTCAGTTTGATCAGGGGGGACGGATTTCAGGAGCTGCTA TCAGAACTTATTTGCTAGAAAGGTCACGTGTTTGTCAGCTTTCTGATCCTGAGAGAAATTACCACTGTTTTTACATGCTTTGCGCTGCACCCCCTGAGGA TGTTCAAAAGTACAAATTAGGGAATCCAAGAACATTCCATTATCTTAATCAATCAAATTGCTATGAATTGGATGTTGTGGATGATTCCAAGGAATACATT GCCACAAGAAGAGCAATGGAGATTGTTGGAATAAGTGCTGAAGAGCAGGATGCCATATTTCGAGTTGTGGCTGCAGTCCTCCATCTTGGAAACATTGAGT TTGCAAAAGGGAAGGAAATGGACTCATCAGTGCCTAAAGATGAAAAGTCTTGGTTTCATTTAAGAACTGTGGCTGAGCTTTTAATGTGTGATTCAAAAGC ATTGGAAGACTCTCTCTGCAAACGTGTAATTGTTACCCGTGATGAAACCATTACAAAGTGGCTGGATCCCGAATCTGCCGCAGTTAGTAGAGACGCGTTG GCAAAAGTTGTGTATTCAAGGCTGTTTGATTGGCTTGTTGATAAGATTAATAGTTCAATTGGTCAAGACCCTCACTCAAAGTACTTAATTGGTGTGCTGG ATATTTATGGATTTGAGAGTTTCAAGACAAACAGTTTTGAGCAATTTTGCATCAATTTGACAAATGAGAAGCTTCAGCAGCATTTCAATCAGCATGTTTT CAAAATGGAGCAAGAAGAATATACAAAAGAAGAAATCGATTGGAGCTACATTGAGTTCGTTGATAATCAAGATATTCTGGATCTCATTGAAAAGAAACCT GGTGGTATAATTGCTCTTCTGGATGAAGCTTGCATGTTTCCAAGATCAACACATGAAACATTCGCCCAAAAGTTATACCAGACATTTAAAAACCACAAGC GGTTTGCCAAGCCAAAATTAGCCCGAAGTGATTTCACAATTTGCCATTATGCTGGTGATGTCACATATCAAACAGAATTATTCCTGGACAAGAACAAAGA TTATGTTGTTGCTGAACATCAGGCACTCATGGGCGCTTCCAAATGTTCCTTTGTGTCGGGTTTATTTCCACCTTTAGCAGAAGAATCTTCCAAACAATCA AAGTTCTCTTCAATAGGTTCTCGGTTTAAGCAACAACTGCAAGCATTACTTGAAACTCTCAGTGCAACTGAGCCACATTACATTCGATGTGTAAAGCCCA ATAATCTTCTTAAGCCAGCGATCTTTGAGAATAAGAATGCTCTTCAACAACTGCGATGTGGGGGAGTCATGGAGGCAATTAGAATTAGTTGTGCTGGATT TCCTACTAGAAAGACATTTGATGAATTTGTAGATCGATTTGGCCTTCTCGCACCTGAAGTTTTGGATGGGAGTTCGGATGAAGTCACTGCTTGCAAGAGG CTCCTTGAGAAGGTTGGGCTCACGGGCTATCAGATTGGTAAAACCAAGGTATTTCTTAGGGCTGGTCAAATGGCAGAATTGGATGCTCGTAGGAGTGAGG TCTTAGGAAGATCAGCTAGCATTATTCAGAGGAAAGTCCGGTCATATTTGTCTCGCAGAAGCTTTATTACACTTCGTCGGTCTGCAATACAGATTCAATC TGCATGCAGAGGACAAATTGCTCGCCATGTCTATGAGAACATGCGCAGGGAGGCTGCTTCTCTGAGAATCCAAAGAGATTTACGCATGTATATTGCTAGG AAAGCTTATAAAGATTTGTGTTATTCTGCTATATCGATTCAAACAGGCATGCGTGGGATGGCTGCTCGGGATGATTTACGCTTCAGAAGGCAGACTAGAG CAGCGATTATGATCCAGAGTCAATGTCGCAAATACCTGGCCCGATTACATTATAAGAAGTTAAAGAAAGCAGCAATCACAACGCAATGTGCATGGAGAGG AAGAGTTGCTCGTAAAGAACTGCGAAATCTTAAGATGGCTGCAAGAGAAACAGGAGCTCTTCAGGCTGCCAAGAATAAGTTGGAAAAGCAAGTTGAAGAA TTAACATGGAGACTTCAGCTGGAGAAACGCATGAGGGCTGACGTGGAAGAGGCCAAAACACAAGAAAATGCAAAGCTACAATCTGCTCTGCAAGAAATGC AACTTCAGTTCAAAGAAACTAAAGAAATGCTAGTGAAGGAACGTGAGGCTGCCATAAAGGTGACAGAGAAAGTACCTGTTATACAGGAGGTTCCAGTAGT AGACCATGTGGCCCTGGAGAAGCTTACTATAGAAAATGAGAAACTCAAGGCTCTGGTAACATCACTGGAAAAGAAAATTGATGAAACAGAGAAAAAATTC GAAGAGACAAGCAGAATAAGTGAGGAAAGATTGAAGCAAGCTTTGGAGGCAGAATCAAAAATAGTTGAATTGAAGACTGCTATGCATAGGCTTGAAGAAA AGTTTTCTGACATTGAAACGGAGAACCAAGTTCTTCGGCAGCAAGGGCTGTTACAAACACCTGCAAAGAAGCTGTCAGAGCGTCCTCCAATTCCACCAAC TCAGAGTTTGGAAAATGGCCACCATCTGAACGATGAGAATAAAGCCAATGAGCCACAGAGTGCAACACCGGTTAAGACGTATGGCACAGAGTCAGACAGC AAGTTTAGGAGATCCCACATTGAGCGTCAACATGAGAATATTGATGCGCTTATTAGCTGTGTAACAAATAACATCGGGTTCAGTCATGGAAAGCCTGTTG CTGCGCTTACCATTTACAGATGTCTTCTCCACTGGAAATCTTTTGAAGCAGAAAGGACTAGTGTGTTTGATCGTCTCATTCAAATGATTGGTTCAGCAAT TGAGAATGAAGAAAACAATGAACATATGGCTTACTGGTTATCAAATACATCTACTTTATTGTTTTTACTGCAACGAAGTATAAAGGCAGCTGGTGCTAGT GCAACTCCGCAACGGAAACCTCCCTCGGCAACATCCTTGTTTGGGCGGATGACAATGGGTTTTCGCTCATCACCATCTTCTTCCAACCTTGCTGCTGCTG CTGCACTGGCTGTCGTGCGCCAAGTAGAGGCAAAATATCCAGCCTTGCTTTTCAAGCAACAACTTGCAGCATATGTAGAGAAAATTTATGGAATTATTCG AGACAACTTGAAGAAGGAGTTGGCATCTTTGCTTTCCTTATGCATTCAGGCACCCAGGACTTCCAAGGGAAGTGTACTAAGATCTGGACGGTCCTTTGGG AAAGATTCTCCTTTAAGTCACTGGCAGAGCATTGTTGATAGTCTAAACACTCTCCTGAGTACATTGAAGCAAAATTTTGTGCCTCCAGTTCTTATCCAGA AGATCTATACTCAAACTTTCTCATATATCAATGTGCAATTGTTTAACAGTCTTCTCCTACGTCGTGAGTGTTGCACATTTAGCAATGGTGAATATGTAAA ATCTGGGTTAGCTGAGCTAGAGCTATGGAGTGCCCAAGCAAAAGAAGAGTATGCAGGTTCATCTTGGGATGAACTCAAGCACATAAGACAGGCTGTTGGA TTTTTGGTCATACATCAGAAGTACAGAATATCCTACGATGAAATCACAAATGATCTGTGCCCTATCTTGAGTGTTCAGCAACTATATAGAATATGTACGC TATATTGGGACGACAATTATAATACTCGGAGCGTGTCACCTGGTGTCATTTCTAGCATGAGGGTACTGATGACAGAAGACTCCAACAGTGCTGTTAGCAA TTCCTTTTTGTTGGATGACAATTCTGGCATTCCCTTCTCTGTGGATGACCTTTCTAATTCACTGCAAGAGAAAGATTTCATGGATGTTCAGCCGGCAGAG GAACTACTCGAGAACCCAGCCTTCCAATTCTTACACGAGTAA
AA sequence Show only first row Show all	>Potri.002G254300.1 pacid=42778810 polypeptide=Potri.002G254300.1.p locus=Potri.002G254300 ID=Potri.002G254300.1.v4.1 annot-version=v4.1 MASAASLVVGSLVWLEDPDEAWIDGEVVEINKEDIKVLCTSGKTVTVKASKTYPKDAEAPPCGVDDMTKLAYLHEPGVLQNLRSRYDMNEIYTYVGNILI AVNPFTRLPHLYNSHMMAQYKGASFGELSPHPFAVADASYRLMMNEGISQSILVSGESGAGKTESTKLLMRYLAYMGGRAATEGRTVEQQVLESNPVLEA FGNAKTVRNNNSSRFGKFVEIQFDQGGRISGAAIRTYLLERSRVCQLSDPERNYHCFYMLCAAPPEDVQKYKLGNPRTFHYLNQSNCYELDVVDDSKEYI ATRRAMEIVGISAEEQDAIFRVVAAVLHLGNIEFAKGKEMDSSVPKDEKSWFHLRTVAELLMCDSKALEDSLCKRVIVTRDETITKWLDPESAAVSRDAL AKVVYSRLFDWLVDKINSSIGQDPHSKYLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDILDLIEKKP GGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRFAKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALMGASKCSFVSGLFPPLAEESSKQS KFSSIGSRFKQQLQALLETLSATEPHYIRCVKPNNLLKPAIFENKNALQQLRCGGVMEAIRISCAGFPTRKTFDEFVDRFGLLAPEVLDGSSDEVTACKR LLEKVGLTGYQIGKTKVFLRAGQMAELDARRSEVLGRSASIIQRKVRSYLSRRSFITLRRSAIQIQSACRGQIARHVYENMRREAASLRIQRDLRMYIAR KAYKDLCYSAISIQTGMRGMAARDDLRFRRQTRAAIMIQSQCRKYLARLHYKKLKKAAITTQCAWRGRVARKELRNLKMAARETGALQAAKNKLEKQVEE LTWRLQLEKRMRADVEEAKTQENAKLQSALQEMQLQFKETKEMLVKEREAAIKVTEKVPVIQEVPVVDHVALEKLTIENEKLKALVTSLEKKIDETEKKF EETSRISEERLKQALEAESKIVELKTAMHRLEEKFSDIETENQVLRQQGLLQTPAKKLSERPPIPPTQSLENGHHLNDENKANEPQSATPVKTYGTESDS KFRRSHIERQHENIDALISCVTNNIGFSHGKPVAALTIYRCLLHWKSFEAERTSVFDRLIQMIGSAIENEENNEHMAYWLSNTSTLLFLLQRSIKAAGAS ATPQRKPPSATSLFGRMTMGFRSSPSSSNLAAAAALAVVRQVEAKYPALLFKQQLAAYVEKIYGIIRDNLKKELASLLSLCIQAPRTSKGSVLRSGRSFG KDSPLSHWQSIVDSLNTLLSTLKQNFVPPVLIQKIYTQTFSYINVQLFNSLLLRRECCTFSNGEYVKSGLAELELWSAQAKEEYAGSSWDELKHIRQAVG FLVIHQKYRISYDEITNDLCPILSVQQLYRICTLYWDDNYNTRSVSPGVISSMRVLMTEDSNSAVSNSFLLDDNSGIPFSVDDLSNSLQEKDFMDVQPAE ELLENPAFQFLHE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04160		XI-B, XI-8, ATX...	MYOSIN XI-8, ARABIDOPSIS THALI...		Potri.002G254300 [exp]	0	1	XIB.1
AT2G29890		ATVLN1, VLN1	villin 1, villin-like 1 (.1.2....		Potri.009G045000 [exp]	2.82	0.8782	VLN1.1
AT4G16340		SPK1	SPIKE1, guanyl-nucleotide exch...		Potri.011G024000 [exp]	3.00	0.8948	Pt-SPIKE1.3
AT4G19020		CMT2	chromomethylase 2 (.1)		Potri.003G100000 [exp]	3.46	0.8876
AT1G49340		ATPI4K ALPHA, A...	Phosphatidylinositol 3- and 4-...		Potri.009G113700 [exp]	4.47	0.8894	Pt-ALPHA.12
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Potri.008G174500 [exp]	4.69	0.8317
AT5G16210			HEAT repeat-containing protein...		Potri.004G095900 [exp]	5.47	0.8687
AT4G28760			Protein of unknown function (D...		Potri.002G253600 [exp]	6.16	0.8168
AT2G25050			Actin-binding FH2 (Formin Homo...		Potri.018G019600 [exp]	7.74	0.8449
AT1G63640			P-loop nucleoside triphosphate...		Potri.001G104000 [exp]	8.60	0.7903
AT3G11130			Clathrin, heavy chain (.1)		Potri.008G070600 [exp]	9.53	0.8434

Compare expression of checked genes

Potri.002G254300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.