Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04150 1096 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G51570 1012 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT3G57880 1011 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT5G12970 972 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT5G06850 944 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT5G48060 914 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT4G11610 914 / 0 NTRB, ATNTRB C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G22610 867 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT3G61300 803 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT4G00700 796 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G049100 [exp] 1012 / 0 AT3G57880 1425 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.014G081700 [exp] 1012 / 0 AT4G11610 1422 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.006G058900 [exp] 1009 / 0 AT3G57880 1372 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.T085601 [exp] 991 / 0 AT5G12970 1315 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.003G210801 [exp] 988 / 0 AT5G12970 1300 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.001G015700 [exp] 981 / 0 AT5G12970 1295 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.001G271400 [exp] 980 / 0 AT5G48060 1481 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.009G065600 [exp] 969 / 0 AT5G06850 1308 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.016G049300 [exp] 933 / 0 AT5G06850 1355 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011271 [exp] 1180 / 0 AT1G04150 1187 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10016280 [exp] 1019 / 0 AT3G57880 1499 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10012026 [exp] 1013 / 0 AT3G57880 1496 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10021030 [exp] 923 / 0 AT5G06850 1383 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10000605 [exp] 919 / 0 AT4G11610 1634 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10023823 [exp] 917 / 0 AT5G06850 1382 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10018839 [exp] 905 / 0 AT4G11610 1348 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10001538 [exp] 845 / 0 AT1G22610 1425 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10033343 [exp] 718 / 0 AT5G12970 821 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10031244 [exp] 711 / 0 AT5G12970 979 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain CL0484 [poplar] [flax] Peroxisome PF08372 [poplar] [flax] PRT_C Plant phosphoribosyltransferase C-terminal
Representative CDS sequence Show only first row Show all	>Potri.002G254400.1 pacid=42778267 polypeptide=Potri.002G254400.1.p locus=Potri.002G254400 ID=Potri.002G254400.1.v4.1 annot-version=v4.1 ATGGCCATGACCAGCAAAGAAAAGCTGGTGGTGGAGGTGGTAGCAGCTCACAACTTGATGCCAAAAGATGGAGAAGGCTCGTCATCACCTTTTGTGGAGG TGGAGTTTGAGAACCAAAGACTAAGAACTCAAGTCAAGTACAAAGACTTGAACCCTATATGGAATCAGAAGCTTGTGTTTCACATCAAAGATGTTGCAGA TCTTTCTTACAGAGCTATAGAGGTTAATGTCTTCAATGAGAGGAGGTCAAGCAACAGCAGAAACTTTCTTGGTAAAGTTAGAGTTTCTGGTTCAAGTGTT GCTAAACAAGGTGAGGAGGTGGTGCAGTTGCACACTCTCGATAAAAGAAGCTTGTTTTCTCATATAAGAGGAGAGATAAGTTTGAAGCTTTATGTTTCTA CAAGAGAGGAGGTTAAGGAAGTTGGGGGTTTTGGTAATGGAGAGGTGGTTTCTAGTACTCCTGGATCTTCTAATTCTTCAAAGAAGAACAAGAAGACACA GCAGCAGAATCCAGTTATATTGCAGCAACCGCAACAGTTGTCTAAAGAGGTCATAAACAATAACAAGCAAGCACAAGAGCAAGGCCAGAACAATATCAAT GCAAAGTCTGTTGAGACGAACCCAGGTGGGATTAAACCTGTTGTCACCACCACTGCTCTTGGTCCTGGTTCTCTTGTTTCTAGTTCTGGAGGGGGCATTG TAGGCCCTGCTGGAGGTGCAGGTCTTGGTGGGATTAGTGTGCACTCAAACGGGTCTAGTGAGTTCTCTCTTAAAGAGACAAGCCCACACCTTGGTGGGGG TCGTTTAAACAAAGATAAAACTAGTTCAACTTATGATCTTGTTGAGCTAATGCAGTATCTTTATGTTAGAGTTGTTAAGGCTAAATATAACATGTTGTTT GGTGGTGGTGAAGTAGTGGCGGAGGTGAAGTTAGGGAACTATAGGGGGGTTACAAAGAAGGTAATCGGTTCAAGTAATGTGGAATGGGACCAAGTTTTTG CTTTCTCTAAAGATTGCATACAGTCATCAATGGTGGAGGTTTTTGTCAAACAAGGCAACAAAGATGATTACTTGGGCCGTGTTTGGTTTGATTTGAATGA AGTTCCTAGAAGGGTACCCCCTGACAGTCAATTAGCACCACAATGGTACAGAATGGAGGACAAGAAAGGGGACAAGTCAAAAGGTGGCGAGCTTATGGTG TCTATTTGGTTTGGGACTCAAGCTGACGAGGCCTTCGCCGAGGCTTGGCATTCAAAGGCAGCAAATGTGCATTTTGAGGGGCATTGCTCGATCAAATCCA AGGTTTATCTATCACCTAAGCTGTGGTATCTACGGGTGGCTGTTATTGAAGCACAAGATATTGTTCCTGGGGAAAAGGGTTTGGGAATGATGAGGTTCCC AGAACTTTTTGTGAAAGTCCAGGTGGGCAACCAGATTCTGAGGACTAAAATAGCAGGGCCTAACCCCAACAGGAGTATGATCAATCCTTACTGGAGTGAG GAATTGATGTTTGTAGTTGCAGAGCCATTTGAGGATTTCTTGTTCCTTTCTGTCGAGGATCGTGTTGGACCGGGGCGAGAGGAGGCTGTAGGTAGAGTTA TGCTTCCAGTGGCTGCGATTGAAAGGCGTCATGATGATAAACAAGTCGTTTCTAGGTGGTTCAATCTTGATAATCAATTTGGCAGTGCAGTTGAGTCAAA ACTTGTGACGAGATTTGGGTCTAAAATTCACCTCAGGCTGTCTCTAGATGGGGGCTACCATGTGCTAGATGAGAGCACAATGTATAGCAGCGATGTTAGG CCAACTGCAAAACAGCTGTGGAAGCCTCACATTGGTGTTCTTGAGATGGGAATTTTGGGTGCAACAGGGCTGATGCCAACAAAACTCAAGGAAGGGAAAA GGGAGTCCATAGATGCTTACTGTGTTGCAAAGTATGGTCAGAAATGGGTGAGAACGCGCACGGTTGTTGATAGTTTCTCACCCAAATGGAACGAGCAGTA CACTTGGGAAGTGTTTGATCCTTGCACAGTCATCACTGTTGGGGTTTTTGATAACTGTCGAACAGACAAGAACGTGTTTAACAATACCGGTGCTCGTGAT TCTCGCATTGGGAAAGTTAGAGTTCGGTTATCAACCCTTGAATCAGACAGGGTTTATACACATTCTTATCCTCTCCTTGTGCTTCACACTACTGGTGTCA AGAAGATGGGTGAGCTTCATTTAGCTGTTAGGTTTTCTTGTGCGAACATGGCTAATATGTTGCACATGTACACACTGCCACTGCTGCCACAGATGCATTA TGTGCATCCATTGAGTGTGAACCAACTGGATGCCATGAGGTATCAAGCAATGAATGTGGTGGCATCACGGCTTAGTCGAGCAGAGCCACCACTGGGGCGA GAAGTGGTGGAGTACATGCTTGATCACGATTCTCATATGTGGAGCATGAGAAGAAGCAAGGCTAACTTTGCTAGACTAATAAGTGTACTCTCTGTTCTTG TTGCCATGGCTCGGTGGGTGGAGTCGATGCGCAATTGGCACAAGCCAGTCTACTCAACCTTGTTTGTTTTAGCGTTCCTCTTGTGGGTTGCAATGCCTGA GCTCATTATCCCTTCACTGTTGCTCTACATGGCATTTGTGGGACTCTGGCGATACAGGACACGACCACGTCACCCACCCCACATGGATACTAAGCTTTCT CATGTTGTAAGTGTTTACTCCGATGAACTGGATGAAGAATTTGACTCTTTTCCAACAAGCCGAAGTGCCGAGACAGTCAGGATGAGGTATGATAGGCTGA GGAGTGTGGCAGGGAGGATTCAAACTGTGGTTGGTGATATGGCTTCTCAAGGTGAACGTTTCCAGGCATTGCTAGGTTGGAGAGACCCAAGAGCCACCTT CTTGTTCGTGGTTATGTGCCTGTTCGCGGCTGTAGGGTTCTATGCTGTGCCAATCAGGGTTGTGGTGGCTCTGTGGGGGCTATATGTGATGAGGCCGCCC AAATTCAGGAACAAGTTGCCTCCGAGGGCTTTAAGTTTCTTCAGAAGGTTGCCTACAAAGGCTGATAGTTTGTTGTAG
AA sequence Show only first row Show all	>Potri.002G254400.1 pacid=42778267 polypeptide=Potri.002G254400.1.p locus=Potri.002G254400 ID=Potri.002G254400.1.v4.1 annot-version=v4.1 MAMTSKEKLVVEVVAAHNLMPKDGEGSSSPFVEVEFENQRLRTQVKYKDLNPIWNQKLVFHIKDVADLSYRAIEVNVFNERRSSNSRNFLGKVRVSGSSV AKQGEEVVQLHTLDKRSLFSHIRGEISLKLYVSTREEVKEVGGFGNGEVVSSTPGSSNSSKKNKKTQQQNPVILQQPQQLSKEVINNNKQAQEQGQNNIN AKSVETNPGGIKPVVTTTALGPGSLVSSSGGGIVGPAGGAGLGGISVHSNGSSEFSLKETSPHLGGGRLNKDKTSSTYDLVELMQYLYVRVVKAKYNMLF GGGEVVAEVKLGNYRGVTKKVIGSSNVEWDQVFAFSKDCIQSSMVEVFVKQGNKDDYLGRVWFDLNEVPRRVPPDSQLAPQWYRMEDKKGDKSKGGELMV SIWFGTQADEAFAEAWHSKAANVHFEGHCSIKSKVYLSPKLWYLRVAVIEAQDIVPGEKGLGMMRFPELFVKVQVGNQILRTKIAGPNPNRSMINPYWSE ELMFVVAEPFEDFLFLSVEDRVGPGREEAVGRVMLPVAAIERRHDDKQVVSRWFNLDNQFGSAVESKLVTRFGSKIHLRLSLDGGYHVLDESTMYSSDVR PTAKQLWKPHIGVLEMGILGATGLMPTKLKEGKRESIDAYCVAKYGQKWVRTRTVVDSFSPKWNEQYTWEVFDPCTVITVGVFDNCRTDKNVFNNTGARD SRIGKVRVRLSTLESDRVYTHSYPLLVLHTTGVKKMGELHLAVRFSCANMANMLHMYTLPLLPQMHYVHPLSVNQLDAMRYQAMNVVASRLSRAEPPLGR EVVEYMLDHDSHMWSMRRSKANFARLISVLSVLVAMARWVESMRNWHKPVYSTLFVLAFLLWVAMPELIIPSLLLYMAFVGLWRYRTRPRHPPHMDTKLS HVVSVYSDELDEEFDSFPTSRSAETVRMRYDRLRSVAGRIQTVVGDMASQGERFQALLGWRDPRATFLFVVMCLFAAVGFYAVPIRVVVALWGLYVMRPP KFRNKLPPRALSFFRRLPTKADSLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04150			C2 calcium/lipid-binding plant...		Potri.002G254400 [exp]	0	1
AT2G28120			Major facilitator superfamily ...		Potri.001G194500 [exp]	4.58	0.7589
AT1G62500			Bifunctional inhibitor/lipid-t...		Potri.008G135860 [exp]	13.41	0.7130
AT4G16807			unknown protein		Potri.003G080700 [exp]	13.78	0.7324
AT5G57420	AUX_IAA	IAA33	indole-3-acetic acid inducible...		Potri.006G166900 [exp]	15.62	0.7661
AT1G62500			Bifunctional inhibitor/lipid-t...		Potri.003G111300 [exp]	17.74	0.7342
AT1G75640			Leucine-rich receptor-like pro...		Potri.005G235100 [exp]	17.83	0.7592
AT1G67590			Remorin family protein (.1.2)		Potri.010G056800 [exp]	23.23	0.7506
AT3G12580		ATHSP70, HSP70	ARABIDOPSIS HEAT SHOCK PROTEIN...		Potri.008G054733 [exp]	27.65	0.7030
AT4G25240		SKS1	SKU5 similar 1 (.1)		Potri.015G127200 [exp]	28.14	0.7335	SKS1.3
AT3G09440			Heat shock protein 70 (Hsp 70)...		Potri.008G054766 [exp]	28.77	0.7055

Compare expression of checked genes

Potri.002G254400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.