Plant FIBer expression Database

Potri.002G254500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G28706 537 / 0 pfkB-like carbohydrate kinase family protein (.1.2.3.4)
AT5G43910 430 / 2e-150 pfkB-like carbohydrate kinase family protein (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011270
[exp]
560 / 0 AT4G28706 541 / 0.0 pfkB-like carbohydrate kinase family protein (.1.2.3.4)
Lus10000210
[exp]
322 / 2e-109 AT4G28706 308 / 2e-104 pfkB-like carbohydrate kinase family protein (.1.2.3.4)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0118 Ribokinase PF00294 PfkB pfkB family carbohydrate kinase
Representative CDS sequence
>Potri.002G254500.1 pacid=42778016 polypeptide=Potri.002G254500.1.p locus=Potri.002G254500 ID=Potri.002G254500.1.v4.1 annot-version=v4.1
ATGCTCTCGCTGTCAACATATCCTCCTTCTCTCACCTCTCCCCCCCGCTTCTCGTATTTACGCCACCCTTCCTCCTCCTCTCGTATCCTCTCTCCACCAC
CACCAACCACCGCCACGGCCACCAGAGTGAAAATTACGTCATCGGAGATGGACTCGCTTCCTGAGCACCGCATCGTCTTAGGATGCGGAGCGGCAGGGGT
GGATTTCCTGGCGACCGTCGCTTCTTTTCCTAAACCTGATGACAAGATCCGAAGCACTAGCTTGAAGGTGCAAGGAGGTGGAAATGCGGGGAATGCGTTA
ACATGTGCTGCTCGTTTGGGTTTGAATCCCAGGCTCATTTCCAAGGTTGCTGATGATATTCAAGGCAGGGGAGTTTTGGAGGAGCTAGAATCCGATGGTG
TTGATACTTCTTTTTTCGTGGTTTCCAAGGAGGGAAATTCACCATCTACATATATTATTGTTGACAATGAAACGAAAACCCGTACCTGTATTCATACTCC
GGGATATCCTCCCATGATACCAGATGAACTTTCCCGGTCAAGCCTTTTATCTGCATTGGATGGAGCAAGACTTGTTTATCTTGATGGAAGGTTACATGAA
ACTGCCTTAGTGACTGCACAAGAGACAGTTTGCAAAAATATACCCATTTTGATTGATGTGGAAAGAAAGAGAGAAGGGCTGGATGATCTTCTGCCGTTGG
CTAGTTATGCTGTATGCTCATCAAAATTTCCACTGGCATGGACAGAGGCGCCATCTATTTCAAGTGCACTTGTTTCCATGCTTCTGAGATTGCCGAAAAT
CAAATTTGTGATTGTGACCTTGGGTGAAGATGGATGTGTAATGCTTGAGAGAAGCACAGAAGAGGCTCCTGCATCAGAAGAAAAGGATGTAGATAGCTTG
TTGGAGTCACTGAAGCAGAGAAAGGATGATAACATAGCCATCCCAACATGTTATGCATCACCACTGACAAAGATAAGAGCAGATGGTATAGGGACAGTGA
ATGGGAGGTTGTTTGTGGGAACAGCTGAGAAGATACCACCACCAGAACTTGTTGATACGACTGGTGCTGGAGATGCTTTTATTGGTGCTGTTCTTTATGC
TATCTGCGCCAACATGCCTCCGGAGAAGATGTTACCATTCGCTTCTCAAGTGGCAGCTGCTGGCTGTAGGGCTTTGGGAGCTCGAACTGGTCTCCCGCAC
CGCACAGATCCACGCTTGGCGGCCTTTTTACATTAG
AA sequence
>Potri.002G254500.1 pacid=42778016 polypeptide=Potri.002G254500.1.p locus=Potri.002G254500 ID=Potri.002G254500.1.v4.1 annot-version=v4.1
MLSLSTYPPSLTSPPRFSYLRHPSSSSRILSPPPPTTATATRVKITSSEMDSLPEHRIVLGCGAAGVDFLATVASFPKPDDKIRSTSLKVQGGGNAGNAL
TCAARLGLNPRLISKVADDIQGRGVLEELESDGVDTSFFVVSKEGNSPSTYIIVDNETKTRTCIHTPGYPPMIPDELSRSSLLSALDGARLVYLDGRLHE
TALVTAQETVCKNIPILIDVERKREGLDDLLPLASYAVCSSKFPLAWTEAPSISSALVSMLLRLPKIKFVIVTLGEDGCVMLERSTEEAPASEEKDVDSL
LESLKQRKDDNIAIPTCYASPLTKIRADGIGTVNGRLFVGTAEKIPPPELVDTTGAGDAFIGAVLYAICANMPPEKMLPFASQVAAAGCRALGARTGLPH
RTDPRLAAFLH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G28706 pfkB-like carbohydrate kinase ... Potri.002G254500
[exp]
0 1
AT3G50820 OEC33, PSBO2, P... OXYGEN EVOLVING COMPLEX SUBUNI... Potri.005G130400
[exp]
4.00 0.9540 Pt-PSBO.1
AT3G18890 AtTic62 translocon at the inner envelo... Potri.004G150300
[exp]
6.70 0.9527 Pt-TIC62.1
AT2G42220 Rhodanese/Cell cycle control p... Potri.006G059200
[exp]
7.61 0.9536
AT1G22700 Tetratricopeptide repeat (TPR)... Potri.013G114500
[exp]
10.48 0.9497
AT3G18890 AtTic62 translocon at the inner envelo... Potri.009G111323
[exp]
11.22 0.9486
AT1G02475 Polyketide cyclase/dehydrase a... Potri.002G190300
[exp]
23.62 0.9179
AT1G31330 PSAF photosystem I subunit F (.1) Potri.001G081500
[exp]
24.95 0.9447
AT5G35630 ATGSL1, GLN2, G... GLUTAMINE SYNTHETASE LIKE 1, g... Potri.008G200100
[exp]
25.13 0.9397 Pt-NCPGS.8
AT3G59780 Rhodanese/Cell cycle control p... Potri.013G128300
[exp]
25.25 0.9199
AT1G11860 Glycine cleavage T-protein fam... Potri.011G006800
[exp]
25.69 0.9362 gdcT1,Pt-GDCST.1

Potri.002G254500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.