Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20300 947 / 0 ALE2 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) AT5G56890 602 / 0 Protein kinase superfamily protein (.1) AT4G02010 384 / 2e-122 Protein kinase superfamily protein (.1) AT3G20530 327 / 1e-104 Protein kinase superfamily protein (.1) AT5G18610 325 / 1e-102 Protein kinase superfamily protein (.1.2) AT1G20650 321 / 1e-102 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) AT5G02800 315 / 3e-100 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT1G61860 314 / 8e-100 Protein kinase superfamily protein (.1) AT1G68690 324 / 9e-100 AtPERK9 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) AT5G13160 315 / 1e-99 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G194300 [exp] 1262 / 0 AT2G20300 966 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) Potri.006G152000 [exp] 605 / 0 AT5G56890 846 / 0.0 Protein kinase superfamily protein (.1) Potri.018G068100 [exp] 599 / 0 AT5G56890 801 / 0.0 Protein kinase superfamily protein (.1) Potri.003G039100 [exp] 583 / 0 AT5G56890 701 / 0.0 Protein kinase superfamily protein (.1) Potri.014G119100 [exp] 391 / 6e-125 AT4G02010 993 / 0.0 Protein kinase superfamily protein (.1) Potri.002G194700 [exp] 390 / 8e-125 AT4G02010 958 / 0.0 Protein kinase superfamily protein (.1) Potri.001G060800 [exp] 330 / 7e-105 AT5G13160 714 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.003G166900 [exp] 329 / 1e-104 AT5G13160 745 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.001G421400 [exp] 324 / 8e-104 AT3G20530 587 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011917 [exp] 997 / 0 AT2G20300 951 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) Lus10022848 [exp] 961 / 0 AT2G20300 912 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) Lus10027635 [exp] 615 / 0 AT5G56890 887 / 0.0 Protein kinase superfamily protein (.1) Lus10011933 [exp] 608 / 0 AT5G56890 880 / 0.0 Protein kinase superfamily protein (.1) Lus10037526 [exp] 369 / 5e-117 AT4G02010 865 / 0.0 Protein kinase superfamily protein (.1) Lus10011466 [exp] 383 / 3e-115 AT2G47330 1110 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015756 [exp] 333 / 2e-106 AT5G13160 732 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Lus10033966 [exp] 325 / 2e-102 AT5G18610 805 / 0.0 Protein kinase superfamily protein (.1.2) Lus10012814 [exp] 325 / 2e-102 AT5G18610 807 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040050 [exp] 321 / 2e-102 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.002G254600.1 pacid=42779632 polypeptide=Potri.002G254600.1.p locus=Potri.002G254600 ID=Potri.002G254600.1.v4.1 annot-version=v4.1 ATGCATACCTTGGCGACATCGCTGCTTGTTCTTTGCTTGTCTAGCTTTGTTTTTACTTGTTTAGGACATCCATTACTTCATATGTATTTGTCTCCTTCTT TGCAACCAAGCTGGCCATTATCTGTGAAAGACATTTTTGTGAGACATGGAATGTCGCTTGCAATGAAAGTGTCATTTGCTCGATCGCGGCCATCTCGAAA TCACGTGGTTAAGCCTTCTTTGGGCCCTATCCTCTCACCTGCAACTTCTTTGGTGCATCAAGCTCTCCCCCCTGTTCCTAGCAGTGCACCCTTACCAAGA CGTCATGGTGGTCATCATCATCGCCATGTGAAACCTGTAGTGACTGCTCCATTCCCTTCAGAAGAGCAAAGCTGTGATCAAATATGCACAGAGCCACTCA CTGCATCTCTCTCTGGCTCACCTTGTGGCTGTGTTTATCCTATGAAAGTTAGACTTCTCCTAGATGTGGCTCCGTATGCTGTTTTTCCTGTAATGAGAGA GCTAGAGAGTGAAGTTGCAGCAGGCACGTATCTGGAACAGAGTCAAGTGATAATCATGGGTGCAAGTGCTGACAGTCAGAATCAGGGGAAAACGGTCGTG GATATCAACTTGGTTCCACTTGGAGAGAAGTTTGATAATACTACTGCAATACTTACATATGATAGATTTTGGAAAAACAAAATGCCTTTAAATATAACTC TTTTTGGTAATTATGAAGTTATATACATTAGTTATCCAGGGATTCCTTCTTCACCACCATATCCAAACTACACGGGGAGTGGTCCGAGTGGAAGTGCAGG AGATCTCCCCATTACTGCTAATTTTGCGAGCAAGACCCAGAGGATGAATCTTAGAACCATCACCACCATTGCTTTGTCAGCATTTGTGGTTTTAGTGGTT TGCATTGGGGCAATTGCTGTTGTTGTGAAATGGAGGAAGTCTGGAAGACCATCAAGTGCTGTTGGTCCGGCATTTACATCCTCTATAAATAAAAGATCTG GCATTGGGTCTTTCTTGTCAAGCAGCATTGCAAGCTCAACACCAATGTCCCTCATGTCCAACATGGCTACTTGTATGCTCTCCGTCAAAACATTTTCATT CGCTGAGCTTGAGAAGGCAACAGACAAGTTCAGTTCAAAGAGGATTTTAGGTGAAGGAGGATTTGGACGTGTTTACCTCGGGAGTGTCGAAGATGGAACT GAAGTTGCTTTTAAGCTGCTTACAAGGGACAATCAGAATGGAGACCGTGAATTTGTCGCTGAAGTTGAAATGTTAAGTCGATTGCATCATCGAAACCTTG TGAAACTTATTGGCATATGTATTGAAGGGCGCACACGCTGCTTGGTGTATGAACTTATTCGGAATGGCAGTGTGGAATCGCACTTGCATGGTGTTGACAA GAATAAGGGACCTCTTGACTGGGATGCACGGTTGAAGATTGCCCTTGGAGCAGCTAGGGGATTGGCCTATCTTCACGAAGATTCCAACCCTCGTGTAATT CATCGAGATTTTAAGGCTAGTAATGTTTTACTAGAAGATGACTTCACCCCCAAGGTCTCTGATTTTGGCTTGGCGAGGGAAGCAACAGAAGGAAGTCATC ATATATCTACTAGGGTCATGGGAACTTTTGGGTATGTTGCCCCTGAATATGCAATGACAGGACATTTACTTGTAAAGAGTGATGTCTACAGTTATGGGGT TGTGCTGCTTGAGCTTCTGTCTGGAAGAAAACCTGTGGATATGTCCCAACCTCCGGGACAGGAAAATTTAGTGACTTGGGCACGCCCGCTGCTAACTACT AGAGAAGGATTGGAGCAGTTGGTGGATCCTTCCTTGGCAGGAAGCTATGACTTTGATGACATGGCTAAAGTGGCAGCCATTGCTGCCATGTGTGTTCACT CAGAGGTGACTAACAGGCCATTCATGGGTGAAGTTGTCCAGGCTCTGAAACTGATATACAATGACACAGATGAGACTTGTGGAGACTACTGCAGTCAAAA GGAGTCCTCTGTTCTGGAATCTGACTTCAAATGTGATCTTGTTCCTTCGGACAGTAGCTGGTGGAATGCTGGCGGGACCTCCCCTCGGTTAACTTATGGG CAGGCCTCATCCTTCATTACGATGGATTACAGTTCCGGTCCACTTGAAGAGATGGAAAGCAGACCGTTTTCAGCTTCAAGTTTAGCTGGGGATCGCCTGT CTCTGCCAATTAGACACATGAACCGTTCCGGCCCCTTGAGAACTGTAAGAAGTAAACCAGCCTTCTATAGATTAAGGGGCAGCGTTAGCGAACACTGGGG GCTCCTGTCAAGGCGTTTTCGGAATGACGGATATTGGGTATGA
AA sequence Show only first row Show all	>Potri.002G254600.1 pacid=42779632 polypeptide=Potri.002G254600.1.p locus=Potri.002G254600 ID=Potri.002G254600.1.v4.1 annot-version=v4.1 MHTLATSLLVLCLSSFVFTCLGHPLLHMYLSPSLQPSWPLSVKDIFVRHGMSLAMKVSFARSRPSRNHVVKPSLGPILSPATSLVHQALPPVPSSAPLPR RHGGHHHRHVKPVVTAPFPSEEQSCDQICTEPLTASLSGSPCGCVYPMKVRLLLDVAPYAVFPVMRELESEVAAGTYLEQSQVIIMGASADSQNQGKTVV DINLVPLGEKFDNTTAILTYDRFWKNKMPLNITLFGNYEVIYISYPGIPSSPPYPNYTGSGPSGSAGDLPITANFASKTQRMNLRTITTIALSAFVVLVV CIGAIAVVVKWRKSGRPSSAVGPAFTSSINKRSGIGSFLSSSIASSTPMSLMSNMATCMLSVKTFSFAELEKATDKFSSKRILGEGGFGRVYLGSVEDGT EVAFKLLTRDNQNGDREFVAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELIRNGSVESHLHGVDKNKGPLDWDARLKIALGAARGLAYLHEDSNPRVI HRDFKASNVLLEDDFTPKVSDFGLAREATEGSHHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLSGRKPVDMSQPPGQENLVTWARPLLTT REGLEQLVDPSLAGSYDFDDMAKVAAIAAMCVHSEVTNRPFMGEVVQALKLIYNDTDETCGDYCSQKESSVLESDFKCDLVPSDSSWWNAGGTSPRLTYG QASSFITMDYSSGPLEEMESRPFSASSLAGDRLSLPIRHMNRSGPLRTVRSKPAFYRLRGSVSEHWGLLSRRFRNDGYWV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20300		ALE2	Abnormal Leaf Shape 2, Protein...		Potri.002G254600 [exp]	0	1
AT5G13260			unknown protein		Potri.003G164100 [exp]	1.41	0.9291
AT2G16950		ATTRN1	transportin 1 (.1.2)		Potri.009G138200 [exp]	3.00	0.9185
AT5G28350			Quinoprotein amine dehydrogena...		Potri.014G087900 [exp]	4.24	0.9059
AT3G28430			unknown protein		Potri.006G204600 [exp]	4.47	0.9140
AT1G16220			Protein phosphatase 2C family ...		Potri.001G473300 [exp]	5.29	0.8990
AT1G17280		UBC34	ubiquitin-conjugating enzyme 3...		Potri.003G073100 [exp]	5.47	0.9231
AT3G44200		IBO1, ATNEK6	"NIMA \(never in mitosis, gene...		Potri.001G218100 [exp]	6.70	0.8983
AT3G29180			Protein of unknown function (D...		Potri.017G088000 [exp]	6.92	0.9107
AT5G43670			Sec23/Sec24 protein transport ...		Potri.008G161300 [exp]	7.74	0.9020
AT1G07860			unknown protein		Potri.009G093700 [exp]	9.38	0.8799

Compare expression of checked genes

Potri.002G254600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.