Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04140 905 / 0 Transducin family protein / WD-40 repeat family protein (.1.2) AT5G43930 818 / 0 Transducin family protein / WD-40 repeat family protein (.1.2.3.4) AT3G49660 69 / 2e-12 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 61 / 2e-09 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT4G02730 58 / 1e-08 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 56 / 1e-07 TAF5 TBP-associated factor 5 (.1) AT5G08390 56 / 1e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT5G16750 56 / 2e-07 TOZ TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) AT5G02430 55 / 2e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 55 / 2e-07 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G193900 [exp] 1360 / 0 AT1G04140 904 / 0.0 Transducin family protein / WD-40 repeat family protein (.1.2) Potri.002G051900 [exp] 65 / 7e-11 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 64 / 1e-10 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 62 / 6e-10 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G045500 [exp] 61 / 3e-09 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.018G020200 [exp] 58 / 2e-08 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.010G255400 [exp] 57 / 4e-08 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G263400 [exp] 57 / 4e-08 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.008G002300 [exp] 57 / 4e-08 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000495 [exp] 1056 / 0 AT1G04140 914 / 0.0 Transducin family protein / WD-40 repeat family protein (.1.2) Lus10022852 [exp] 561 / 0 AT1G04140 434 / 2e-142 Transducin family protein / WD-40 repeat family protein (.1.2) Lus10003487 [exp] 62 / 8e-10 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10018458 [exp] 62 / 1e-09 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011224 [exp] 62 / 1e-09 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10024447 [exp] 62 / 2e-09 AT5G25150 1006 / 0.0 TBP-associated factor 5 (.1) Lus10039636 [exp] 60 / 2e-09 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10007449 [exp] 59 / 2e-08 AT5G25150 957 / 0.0 TBP-associated factor 5 (.1) Lus10017312 [exp] 55 / 3e-07 AT1G64610 439 / 4e-146 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10004167 [exp] 54 / 3e-07 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.002G254700.14 pacid=42778273 polypeptide=Potri.002G254700.14.p locus=Potri.002G254700 ID=Potri.002G254700.14.v4.1 annot-version=v4.1 ATGAATCTGAATTGTGCAACCAAGGAAATGACCGGACTGTCCTTTCCGTTGGATCGAAATCCGCTCGATTCTCCTGCCTCCACTAATCCTCTTCAAAGTG GTAGAAATGCCTTCTGTTTGTTAGTGCAGAGAGAGATTTGTCCGAGAACGAAGCACACACCGAAAAGGCGGTGGGGAGAAGATGCTCATTGGAATTCGAA TTCGTCGTCCTCACCTAAAACTGAGCAAGCTAGAGATGCAAAACGCGGTCTTATTTCGTGGGTTGAGGCGGAGTCGTTGCGGCATTTATCGGCCAAGTAT TGCCCGTTGGTGCCTCCTCCAAGGTCGACCATAGCAGCAGCATTTAGTCCTGATGGAAAAACACTTGCTTCTACGCATGGTGATCACACGGTGAAGATAA TCGATTGTCAAACTGGAAATTGCTTAAAGGTGTTGATGGGTCACCGGAGGACCCCGTGGGTGGTCAGGTTCCACCCACTGCATCCGGAAATTCTTGCAAG TGGAAGCTTGGATTATGAAGTTCGCTTATGGGATGCAAACACATCAGAGTGTATAGGATCTCGTGATTTCTATCGTCCTATTGCTTCCATTGCTTTCCAT GCAGAAGGAGAATTGCTGGCTGTTGCATCAGGTCACAAGTTGTACATATGGCACTACAATAAGAGAGGGGAGGCATCTTCACCAACCATTGTATTGAGGA CTAGGCGTTCTCTTCGAGCAGTGCATTTTCACCCGCACGGGGCTCCATTTCTCTTGACTGCTGAGGTCAATGATCTTGACTCTTCAGATTCCTCGATGAC ACGGGCAACATCTCCCGGTTACCCGAGATATCCTCCTCCTGCTGTTTTTGTCGCAAATGGTCAGTCCAATGATCGTGTTAGCTTGGCTTCTGAACTACCT CTTGTGTCCTTTCCTTTGCTGTTCGTGCCTTCATTTTCCATAGATGATACTAGAGTAGATGTTAATAGACATGTCAATTCATGTACAATGCTAGTGGAGT CCTCTACTTCAACCCAGCCTCAAATGGATACGAATGCAGCAGATAGATATGATCCCTTGGTATCTCCCATGGAGACATTTCCTGCAGTCCCTTCTAGTTC ATATACCAGTGCAGAAGGTATAGTAAGTAATGCTTTCCCGTCTGGAATGGGAAATAGTGTTTCTAACAGCAGAGAAGATGCCATGGAGACCGATGAAATG CAGTCTGTAGGGGGGAACCCACAAGGAAACTCTGTTAATTTAGAGACATTTGGTGTTGGTAATAGTGCAACGGATGGAGTACCTGCACATACTTCAGTTA GGCAGCAGTCCACTGATTTTGGGCAACTTCAGCAGTTTCTACCCTCCAGAGACTCCACGAGGTGGGAGCTCCCACCCTTTTTGCAAGGATGGTTAATGGG TCAGAGCCAAGCTGGTGTTCCATCGACACTTCCTCTTAATAGTGGTGGTCATGAACTTTCAGCCCAGTATTTCGGTCCTTCCTCATTAGCATCTTATCTG TCTACTCAGAATGTGGAAGCTGCAGTGGCTTCTTTAGCAATGCCTGGAAGCACCAGCCTATCTGGGGTTTCTGGGAGATCTGGCTCGCGGCATCGCGTTT CACGCTCCCGGTTCTCTGTGCCTGAATCTGGGGAAAGTGTGGCTCCCATCAATATGCAACACGAGGGTACTGATAATCAGCCCTTATTTAATAGAATCCA ATCTGAAATTGCCACGTCATTGGCAGCTGCTGCAGAGTTACCATGCACCGTAAAGCTTAGAGTGTGGTCACATGACATAGAACATCCTTGTGCTCCACTC AATTCTGATAAATGTTGCTTAACCATACCTCATGCTGTCCTTTGTAGTGAAATGGGTGCTCATTTTTCACCATGTGGAAGATATTTAGCTGCCTGTGTTG CTTGCATGCTGCCCCATATGGAAGCTGATCCTGGTTTACAAACGCTTGTCCATCAAGATACTGGAACCGCAACTTCTCCTACTCGACACCCAATATCAGC TCACCAAGTTATGTACGAGCTTCGCATATATTCCCTGGAGGAGGCAACTTTTGGTTCAGTGCTTGTGTCACGTGCAATTAGAGCTGCTCATTGTTTGACT TCAATCCAGTTCTCACCAACATCTGAGCACATATTACTGGCTTACGGTCGACGCCACGTATCCCTTCTAAAAAGCATTGTCATTGATGGGGAAACAAAAT CACCTATCTATACGGTTTTGGAGGTTTACAGAGTTTCAGATATGGAACTTGTGAGAGTGCTTCCTAGTGCAGAGGATGAGGTCAATGTCGCTTGTTTTCA TCCCTTTGCTGGGGGAGGTCTTGTTTATGGAACCAAGGAAGGGAAACTTAGAGTCCTCAAGTATGATGGTGCCCATGGTGTTTGTTGTACAGGACCAAGT TACTTTCCTGAAGAGAACATGGCTGAGGTGCAGACATATGCTCTAGAAGGTTAA
AA sequence Show only first row Show all	>Potri.002G254700.14 pacid=42778273 polypeptide=Potri.002G254700.14.p locus=Potri.002G254700 ID=Potri.002G254700.14.v4.1 annot-version=v4.1 MNLNCATKEMTGLSFPLDRNPLDSPASTNPLQSGRNAFCLLVQREICPRTKHTPKRRWGEDAHWNSNSSSSPKTEQARDAKRGLISWVEAESLRHLSAKY CPLVPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGNCLKVLMGHRRTPWVVRFHPLHPEILASGSLDYEVRLWDANTSECIGSRDFYRPIASIAFH AEGELLAVASGHKLYIWHYNKRGEASSPTIVLRTRRSLRAVHFHPHGAPFLLTAEVNDLDSSDSSMTRATSPGYPRYPPPAVFVANGQSNDRVSLASELP LVSFPLLFVPSFSIDDTRVDVNRHVNSCTMLVESSTSTQPQMDTNAADRYDPLVSPMETFPAVPSSSYTSAEGIVSNAFPSGMGNSVSNSREDAMETDEM QSVGGNPQGNSVNLETFGVGNSATDGVPAHTSVRQQSTDFGQLQQFLPSRDSTRWELPPFLQGWLMGQSQAGVPSTLPLNSGGHELSAQYFGPSSLASYL STQNVEAAVASLAMPGSTSLSGVSGRSGSRHRVSRSRFSVPESGESVAPINMQHEGTDNQPLFNRIQSEIATSLAAAAELPCTVKLRVWSHDIEHPCAPL NSDKCCLTIPHAVLCSEMGAHFSPCGRYLAACVACMLPHMEADPGLQTLVHQDTGTATSPTRHPISAHQVMYELRIYSLEEATFGSVLVSRAIRAAHCLT SIQFSPTSEHILLAYGRRHVSLLKSIVIDGETKSPIYTVLEVYRVSDMELVRVLPSAEDEVNVACFHPFAGGGLVYGTKEGKLRVLKYDGAHGVCCTGPS YFPEENMAEVQTYALEG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04140			Transducin family protein / WD...		Potri.002G254700 [exp]	0	1
AT5G42140			Regulator of chromosome conden...		Potri.005G190000 [exp]	5.83	0.6884
AT3G07100		AtSEC24A, SEC24...	ENDOPLASMIC RETICULUM MORPHOLO...		Potri.010G211100 [exp]	6.92	0.7359
AT4G38200			SEC7-like guanine nucleotide e...		Potri.009G169800 [exp]	7.07	0.7786
AT4G18270		ATTRANS11	ARABIDOPSIS THALIANA TRANSLOCA...		Potri.011G080600 [exp]	7.74	0.7471
AT4G30100			P-loop containing nucleoside t...		Potri.002G093500 [exp]	8.12	0.7814
AT3G53090		UPL7	ubiquitin-protein ligase 7 (.1...		Potri.016G096500 [exp]	8.30	0.7663
AT3G16785		PLDZ1, PLDZETA1...	PHOSPHOLIPASE D ZETA1, PHOSPHO...		Potri.010G006300 [exp]	9.89	0.7466
AT1G20760			Calcium-binding EF hand family...		Potri.005G253000 [exp]	12.32	0.7069
AT5G44240		ALA2	aminophospholipid ATPase 2 (.1...		Potri.017G013500 [exp]	12.48	0.7632
AT3G44880		PAO, LLS1, ACD1	LETHAL LEAF-SPOT 1 HOMOLOG, AC...		Potri.009G004100 [exp]	14.14	0.7522

Compare expression of checked genes

Potri.002G254700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.