Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28700 635 / 0 AMT1;4 ammonium transporter 1;4 (.1) AT4G13510 630 / 0 ATAMT1;1, AMT1;1 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) AT1G64780 605 / 0 ATAMT1;2 ammonium transporter 1;2 (.1) AT3G24290 598 / 0 AMT1;5 ammonium transporter 1;5 (.1) AT3G24300 595 / 0 ATAMT1;3, AMT1;3 ammonium transporter 1;3 (.1) AT2G38290 56 / 3e-08 AMT2;1, ATAMT2 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G255000 [exp] 686 / 0 AT4G13510 688 / 0.0 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) Potri.019G023600 [exp] 656 / 0 AT1G64780 730 / 0.0 ammonium transporter 1;2 (.1) Potri.010G063500 [exp] 650 / 0 AT4G13510 671 / 0.0 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) Potri.008G173800 [exp] 642 / 0 AT4G13510 692 / 0.0 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) Potri.009G045200 [exp] 483 / 4e-168 AT1G64780 529 / 0.0 ammonium transporter 1;2 (.1) Potri.013G049925 [exp] 209 / 5e-65 AT4G13510 258 / 4e-84 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) Potri.013G040401 [exp] 80 / 9e-16 AT2G38290 471 / 1e-163 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.018G033500 [exp] 66 / 2e-11 AT2G38290 525 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.002G047000 [exp] 64 / 1e-10 AT2G38290 511 / 1e-179 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023705 [exp] 602 / 0 AT4G13510 748 / 0.0 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) Lus10004403 [exp] 576 / 0 AT4G13510 739 / 0.0 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) Lus10018229 [exp] 451 / 9e-156 AT1G64780 610 / 0.0 ammonium transporter 1;2 (.1) Lus10004760 [exp] 382 / 5e-131 AT1G64780 489 / 5e-173 ammonium transporter 1;2 (.1) Lus10000823 [exp] 243 / 5e-78 AT1G64780 312 / 3e-105 ammonium transporter 1;2 (.1) Lus10003096 [exp] 231 / 2e-73 AT3G24300 301 / 4e-101 ammonium transporter 1;3 (.1) Lus10040677 [exp] 182 / 4e-55 AT1G64780 225 / 6e-72 ammonium transporter 1;2 (.1) Lus10004761 [exp] 173 / 5e-52 AT3G24300 226 / 4e-73 ammonium transporter 1;3 (.1) Lus10020248 [exp] 77 / 1e-14 AT2G38290 481 / 7e-167 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10001776 [exp] 72 / 3e-13 AT2G38290 503 / 3e-175 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00909 [poplar] [flax] Ammonium_transp Ammonium Transporter Family
Representative CDS sequence Show only first row Show all	>Potri.002G255100.1 pacid=42778793 polypeptide=Potri.002G255100.1.p locus=Potri.002G255100 ID=Potri.002G255100.1.v4.1 annot-version=v4.1 ATGGCAGCTCTAACTTGCTCTGCCTCTGACCTCCAGTCCTTACTAGGTGGTGCTGCCAATGCCACGGCAGCTGCTGAGTACATTTGTACTCGCTTTGTTG CGGTTTCAGACCATTTTGTTGACACAGCCTATGCTGTTGACAACACTTACCTTCTTTTCTCTGCCTACCTTGTCTTTGCCATGCAACTTGGCTTTGCCAT GTTGTGTGCTGGGTCTGTACGTGCCAAAAATACCATGAACATTATGCTAACCAATGTTCTTGATGCTGCCACTGGTGGCCTTTTCTATTACCTTTTTGGT TTTGCCTTTGCCTTTGGGAGCCCTTCCAATGGATTCATTGGCAAGCAGTTCTTTGGCCTTGAAAGTTTTCCATCACCTTCTTTCGACTATGGCTACTTTC TTTATCAGTGGGCTTTTGCCATTGCAGCTGCTGGGATCACTAGTGGATCCATTGCTGAAAGAACACAGTTTGTTTCATATTTGATATACTCCTCATTCTT GACTGGTTTGGTTTATCCTATTGTCTCTCATTGGTTCTGGTCAGCTGATGGTTGGGCTAGTGCTGGTAGAACTGATGGTAATCTTTTATTTGGATCTGGG GTCATTGATTTTGCTGGTTCTGGTGTTGTACATATGGTTGGAGGGATTGCTGGACTCTGGGGTGCTCTCATTGAAGGCCCCCGAATGGGAAGATTCGACC ATGAAGGCAAGTCGATGGCTCTCCGTGGACATAGTGGTACATTGGTTGTTTTAGGCACATTCCTATTGTGGTTCGGGTGGTATGGTTTCAATCCAGGTTC ATTTCTCAACATCCTAAGAACTTATGGAGATGTTGGTTCTTATTATGGCCAATGGAGTGCTATTGGTAGAACAGCCGTGACAACAACACTTGCAGGGAGC TCTGCTGCACTAACCACTCTCTTTGGTAAACGCATGCTTGCTGGAAACTGGAATGTGACTGATGTCTGCAATGGTTTGCTAGGTGGTTTTGCAGCAATCA CCTCTGGATGCGCGGTTGTAGATCCATGGGCAGCGATCATTTGCGGATTTGTTGCAGCTTGGGTCCTAATTGGCTGCAACAAACTGGCAGATAAATTCCA TTATGATGATCCTTTGGAGGCAGCACAACTTCATGGAGGGTGTGGTGCATGGGGTATTATCTTCACTGCATTGTTTGCAAAGGAAACATATGTCAACGAG ATTTATAGTGGGAAACCAGGGAGGCCATATGGACTGCTTATGGGAGGTGGTGGAAGGCTCTTGGCAGCACACATGGTCCAGATTTTGGTGATCACAGGAT GGGTGAGTGTGACAATGGGGACATTGTTCTGGATACTGCACAAATTCAAGCTTCTGAGGATCTCAGCGGACGAGGAGATGGCAGGAATGGATTTGACAAG CCATGGTGGATTGGCATATGCATATTATGATGAGCATGATGATGCAATGCAGAAGAAATCATTTATGATGACAAAGGCGGATCCCTAG
AA sequence Show only first row Show all	>Potri.002G255100.1 pacid=42778793 polypeptide=Potri.002G255100.1.p locus=Potri.002G255100 ID=Potri.002G255100.1.v4.1 annot-version=v4.1 MAALTCSASDLQSLLGGAANATAAAEYICTRFVAVSDHFVDTAYAVDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAATGGLFYYLFG FAFAFGSPSNGFIGKQFFGLESFPSPSFDYGYFLYQWAFAIAAAGITSGSIAERTQFVSYLIYSSFLTGLVYPIVSHWFWSADGWASAGRTDGNLLFGSG VIDFAGSGVVHMVGGIAGLWGALIEGPRMGRFDHEGKSMALRGHSGTLVVLGTFLLWFGWYGFNPGSFLNILRTYGDVGSYYGQWSAIGRTAVTTTLAGS SAALTTLFGKRMLAGNWNVTDVCNGLLGGFAAITSGCAVVDPWAAIICGFVAAWVLIGCNKLADKFHYDDPLEAAQLHGGCGAWGIIFTALFAKETYVNE IYSGKPGRPYGLLMGGGGRLLAAHMVQILVITGWVSVTMGTLFWILHKFKLLRISADEEMAGMDLTSHGGLAYAYYDEHDDAMQKKSFMMTKADP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G28700		AMT1;4	ammonium transporter 1;4 (.1)		Potri.002G255100 [exp]	0	1	4
AT3G53510		ABCG20	ATP-binding cassette G20, ABC-...		Potri.006G215100 [exp]	12.00	0.6194
AT5G13910	AP2_ERF	LEAFY PETIOLE ...	LEAFY PETIOLE, Integrase-type ...		Potri.001G157100 [exp]	15.00	0.6925
AT5G65950			unknown protein		Potri.001G457201 [exp]	18.49	0.6635
AT5G24810			ABC1 family protein (.1.2)		Potri.012G082950 [exp]	30.65	0.6847
AT5G60390			GTP binding Elongation factor ...		Potri.016G086500 [exp]	34.05	0.6457
					Potri.001G372750 [exp]	72.11	0.5136
					Potri.001G060300 [exp]	94.20	0.5471
					Potri.001G217950 [exp]	143.07	0.5315
AT5G36930			Disease resistance protein (TI...		Potri.010G231250 [exp]	149.23	0.5605
AT1G28160	AP2_ERF		Integrase-type DNA-binding sup...		Potri.001G069300 [exp]	179.55	0.5376

Compare expression of checked genes

Potri.002G255100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.