Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04130 469 / 8e-167 TPR2, AtTPR2 tetratricopeptide repeat 2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G56440 62 / 3e-10 TPR5 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G62740 57 / 7e-09 Hop2 Hop2, stress-inducible protein, putative (.1) AT1G12270 56 / 3e-08 Hop1 Hop1, stress-inducible protein, putative (.1) AT1G04190 55 / 3e-08 TPR3 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G12400 48 / 7e-06 Hop3 Hop3, stress-inducible protein, putative (.1.2) AT3G17970 45 / 8e-05 ATTOC64-III translocon at the outer membrane of chloroplasts 64-III (.1) AT1G58450 43 / 8e-05 TPR6 tetratricopeptide repeat 6, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G58620 43 / 0.0003 TTL4 tetratricopetide-repeat thioredoxin-like 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G014100 [exp] 58 / 3e-09 AT1G56440 476 / 1e-165 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.010G082900 [exp] 56 / 1e-08 AT1G04190 540 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G008400 [exp] 56 / 2e-08 AT1G56440 471 / 1e-163 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.008G156500 [exp] 52 / 2e-07 AT1G04190 540 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G119500 [exp] 51 / 9e-07 AT4G12400 864 / 0.0 Hop3, stress-inducible protein, putative (.1.2) Potri.003G113400 [exp] 48 / 7e-06 AT4G12400 830 / 0.0 Hop3, stress-inducible protein, putative (.1.2) Potri.002G117200 [exp] 47 / 2e-05 AT5G48570 553 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.016G144200 [exp] 46 / 4e-05 AT1G33400 700 / 0.0 tetratricopeptide repeat 9, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G046900 [exp] 45 / 7e-05 AT3G17970 744 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025945 [exp] 464 / 3e-164 AT1G04130 425 / 9e-149 tetratricopeptide repeat 2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014250 [exp] 435 / 9e-153 AT1G04130 391 / 2e-135 tetratricopeptide repeat 2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10032234 [exp] 55 / 5e-08 AT1G62740 892 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10041189 [exp] 54 / 9e-08 AT1G04190 516 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031418 [exp] 54 / 1e-07 AT1G56440 436 / 1e-150 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10024597 [exp] 53 / 3e-07 AT1G62740 886 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10004336 [exp] 52 / 4e-07 AT1G62740 873 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10021905 [exp] 51 / 5e-07 AT1G04190 515 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10006559 [exp] 51 / 7e-07 AT3G04710 581 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Lus10003260 [exp] 50 / 1e-06 AT3G04710 587 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13414 [poplar] [flax] TPR_11 TPR repeat
Representative CDS sequence Show only first row Show all	>Potri.002G255300.1 pacid=42779225 polypeptide=Potri.002G255300.1.p locus=Potri.002G255300 ID=Potri.002G255300.1.v4.1 annot-version=v4.1 ATGGCGCTATGGATGGAAGCAGGGTCAGAACCCAAAACGGAGAGCGAGATTGCTGACCTCCAAGCCATCTCCGCTCTTAAACACTCTACTGCACTTGAAC TTAAGGAGAAAGGTAATGAATATGTGAAGATGGGTAAGAAGCATTACTCTGATGCTATCGAATGCTACACGAGGGCGATAAACCAGGACGCTCTTAGTGA TTCTGACAACTCAATCGTTTATTCCAATAGAGCCCATGTGAATCTACTTCTCGGAAATTACCGGCGAGCTCTTACAGATGCTCAGGAGGCTATTAAGCTT TGCCCCACCAACGTTAAGGCAATGTATCGAGCTGCCAAGGCCTCTCTGTCATTGAGTTTGTTGGTGGAGGCAAAATCTTTTAGTGAAAATGGACTCGAGC AAGACCCAGATAACGAAGAACTGAAAAAGCTTGCCAAGCAGATAAATTTAGTGAAGGTGGAACATGATAAACGTGAGGCTGAAGTTTCAAAGGCTGTGTC AGAGGCTAAGGACCTACTTTCTGCCATTGAAGATAGAGGGTTGAAGGTGGGGAAGGCAATGTTTGGAGAACTTGTTGGATTGAGGAAACCAGTACTTGAT AAAAATAAAATTCTTCATTGGCCGGTTCTTCTTCTGTATGCAGAGGTTATGTCCAGTGACTTCATTGAAGACTTCTGTGAAACAGACATGTTTTTGGCCC ATCTTGACATGATGTTCTCAGAAAGTTGTCCACCATTGCCATGGGATACAGAAAACAATTATACCCGTGAAGCTGTTGAATTATACTATGAGGCTGGTTC TGGAGTTCCTTTATCCAAGAAAAAAATTCTTCATTATCTACTAGATGGGACCTCGGGTGCCAATGTGGAGAGTGTTGATGAAGAGAAGGACGCCATTGAA AGTCATGGTTCAGGAAAGGGCTCTTCAAAATGGGTAAAAGTAAATGAAAAGAGAATGCTTTGTGATGTTTTGAAAGAACCTGACTTCATAATCTCTGGGA TCCCAGTTTTTTATGTCGTTTCAAAACGCTCGAGCTTCTATAAAGAGTTCAAAGCTGGCAAGTGGTCTCTTCCACCATGA
AA sequence Show only first row Show all	>Potri.002G255300.1 pacid=42779225 polypeptide=Potri.002G255300.1.p locus=Potri.002G255300 ID=Potri.002G255300.1.v4.1 annot-version=v4.1 MALWMEAGSEPKTESEIADLQAISALKHSTALELKEKGNEYVKMGKKHYSDAIECYTRAINQDALSDSDNSIVYSNRAHVNLLLGNYRRALTDAQEAIKL CPTNVKAMYRAAKASLSLSLLVEAKSFSENGLEQDPDNEELKKLAKQINLVKVEHDKREAEVSKAVSEAKDLLSAIEDRGLKVGKAMFGELVGLRKPVLD KNKILHWPVLLLYAEVMSSDFIEDFCETDMFLAHLDMMFSESCPPLPWDTENNYTREAVELYYEAGSGVPLSKKKILHYLLDGTSGANVESVDEEKDAIE SHGSGKGSSKWVKVNEKRMLCDVLKEPDFIISGIPVFYVVSKRSSFYKEFKAGKWSLPP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04130		TPR2, AtTPR2	tetratricopeptide repeat 2, Te...		Potri.002G255300 [exp]	0	1
AT5G12410			THUMP domain-containing protei...		Potri.009G049700 [exp]	4.00	0.8498
AT2G25140		HSP98.7, CLPB-M...	HEAT SHOCK PROTEIN 98.7, CASEI...		Potri.006G262700 [exp]	7.61	0.8868
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Potri.001G285500 [exp]	8.06	0.8893
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Potri.009G079700 [exp]	15.16	0.8160
AT3G10110		MEE67	maternal effect embryo arrest ...		Potri.001G281200 [exp]	15.49	0.8133
AT3G44110		ATJ3	DNAJ homologue 3 (.1.2)		Potri.009G015700 [exp]	15.49	0.8796	Pt-PM37.1
AT2G31740			S-adenosyl-L-methionine-depend...		Potri.001G317700 [exp]	16.61	0.8417
AT5G52880			F-box family protein (.1)		Potri.012G035500 [exp]	21.28	0.7583
AT5G49220			Protein of unknown function (D...		Potri.010G000700 [exp]	22.36	0.8792
AT5G26731			unknown protein		Potri.005G000401 [exp]	23.10	0.8699

Compare expression of checked genes

Potri.002G255300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.