Plant FIBer expression Database

Potri.002G255400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G28690 137 / 5e-35 unknown protein
AT2G20310 135 / 1e-34 RIN13 RPM1 interacting protein 13 (.1)
AT4G27660 102 / 7e-25 unknown protein
AT5G54150 93 / 6e-22 unknown protein
AT5G54148 84 / 2e-19 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G006501
[exp]
111 / 2e-28 AT4G27660 122 / 2e-35 unknown protein
Potri.015G003200
[exp]
108 / 3e-27 AT4G27660 117 / 3e-33 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025944
[exp]
216 / 3e-63 AT2G20310 143 / 1e-37 RPM1 interacting protein 13 (.1)
Lus10014249
[exp]
212 / 6e-62 AT2G20310 141 / 7e-37 RPM1 interacting protein 13 (.1)
Lus10000498
[exp]
130 / 5e-32 AT2G20310 124 / 1e-30 RPM1 interacting protein 13 (.1)
Lus10032928
[exp]
92 / 3e-21 AT4G27660 122 / 4e-35 unknown protein
Lus10015578
[exp]
79 / 5e-17 AT4G27660 111 / 2e-31 unknown protein
PFAM info
Representative CDS sequence
>Potri.002G255400.4 pacid=42778590 polypeptide=Potri.002G255400.4.p locus=Potri.002G255400 ID=Potri.002G255400.4.v4.1 annot-version=v4.1
ATGGATTCAAATTCTGTTGTGTTCGACATCAGCTCAGACGAAGAGCCGGCGATTGAAGAGCCCAAGGAGTTCGACGACGATTGTAACTGGTTGACGGAGT
TGTTACGGACCGTTGACCAGGAGAAGGATGATTCTGATGAGGTTGTGATTGTCGGGGAGTATAATCCGCCGAAACCTAAGTCTAAGTCAAAGTCGTCGAA
TCAGGTGGCGGATATTAAGTTTGTTCTCGATGATGACGATGATGATTGCGTTGTGTTGGGCGGTGATCCTGATAAGCCGGTTTCTGCTGTTGATGATGTC
TGCCGGAACGAGACCGATAGTTCTGACGACGGTGATGATGTTCTTGTTGTTGCTGAAAAAGGCCAGGTTGCATGTCGAGACTACCCTCATCCAAGACATC
TTTGTGTTGAATTTCCTTTTGGTTCTACTCCACATGAAAGACATTGTCACCTGTGCCACTGTTACGTTTGTGACTCACTTGCACCATGTGTGCACTGGGG
TACAGGTGTCTCTACTATTGACCATTGTCATGCCACTGATAAGCAGGAGACGTGGAAAAATCAGCGTAAAATTTATAGAACAGGGAAAGATGCTCCAGTT
CCAGTTTCAAAACTTCCTGACGTTACTGTTCCAATGGCCTTGCCCCTACTTAACCATGTAGGATCTCTAGATATTGTACCGCATAATCAGTTATTGACAC
ACAATCCTATGCTGCAGAATCAGGTTTCCAGGATACATAAGATCCGTTCTTGCTCCTCCTCCACCATGGGCATCAGATACCGTAGAAGTCGTCAACCAGG
ATGTGTTCTAGGCAGAAATAGACTCCTATCTCGCTCAGTTTCACAACAAGGACTTGGTGTGCGTATTGATGTTCAACGGGATAGACATCCTAATGCCTTA
GGTCAGCGATTTGTCTCTTCTAGTACAATGTATAAAGGGCCAGGACTTGTTGCGCATGCTTTGGGTACAAACCATCCCACACATGTACCATTGAACATGA
ATTATGCTCCTGCTTCAGGATATGCAAGGAATGTTCCTCCTCTGGCTACATCAAAGGAAAATCCCTCTAGTTTGCATTATGTTTTACCCAATGCAAATTT
TGAATCACATACATACCAGAGCTCCCCCCAGCCCAACATGGGCAGTGTCATTGTAAATACCGTGCCTTCGAGATCTGAAGTAGGCAGTCAACCTACCCTG
CAGTCAAACGATGGCCAAAGTCTTTATCAGCTTGGGAATCAAGGTGAAAATGATGCAGATTCGTTTTTTTCTGATTTTGACTTTTGTCAAGTTAACAACT
CAAGTCAAAGTGATCAGGGAGCTTCTATTGAAAATATTATTCATGGCACAGTGTCCAACAATGAGCCATCAACTGTTAAGCTGTTAAATTCTCAGTTTGC
TGAAATTGAAAGTGCTCAATTCCACTACAAGGATCATGAGCTTGTTGATAGCATTTTTTTAAACCAAGCTGTTCCAGTGGTTTCAGATGGTTTTGTGCCT
CATGATCTGAATGGCTTTTCTCCTGAACGTGCTATTGACCAAGGTGCTGTTAAGAAAGGTCCGATATGCGCAGGGCTGGGTCATGTGATGGTGTATGGCC
ACAGCTGGGTCAAGTATCAGTCTGTTGAGAGCCAGAAATGGTCTTTTATTTCCATAGTCTGCTGTTGGTCACCAATGGTCGTCACGAGATGA
AA sequence
>Potri.002G255400.4 pacid=42778590 polypeptide=Potri.002G255400.4.p locus=Potri.002G255400 ID=Potri.002G255400.4.v4.1 annot-version=v4.1
MDSNSVVFDISSDEEPAIEEPKEFDDDCNWLTELLRTVDQEKDDSDEVVIVGEYNPPKPKSKSKSSNQVADIKFVLDDDDDDCVVLGGDPDKPVSAVDDV
CRNETDSSDDGDDVLVVAEKGQVACRDYPHPRHLCVEFPFGSTPHERHCHLCHCYVCDSLAPCVHWGTGVSTIDHCHATDKQETWKNQRKIYRTGKDAPV
PVSKLPDVTVPMALPLLNHVGSLDIVPHNQLLTHNPMLQNQVSRIHKIRSCSSSTMGIRYRRSRQPGCVLGRNRLLSRSVSQQGLGVRIDVQRDRHPNAL
GQRFVSSSTMYKGPGLVAHALGTNHPTHVPLNMNYAPASGYARNVPPLATSKENPSSLHYVLPNANFESHTYQSSPQPNMGSVIVNTVPSRSEVGSQPTL
QSNDGQSLYQLGNQGENDADSFFSDFDFCQVNNSSQSDQGASIENIIHGTVSNNEPSTVKLLNSQFAEIESAQFHYKDHELVDSIFLNQAVPVVSDGFVP
HDLNGFSPERAIDQGAVKKGPICAGLGHVMVYGHSWVKYQSVESQKWSFISIVCCWSPMVVTR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G28690 unknown protein Potri.002G255400
[exp]
0 1
AT1G65430 ATARI8, ARI8 ARABIDOPSIS ARIADNE 8, ARIADNE... Potri.010G180600
[exp]
1.00 0.8214
AT4G03020 transducin family protein / WD... Potri.010G026800
[exp]
9.38 0.7201
AT1G22540 Major facilitator superfamily ... Potri.013G107050
[exp]
9.48 0.7149
AT5G60910 MADS FUL, AGL8 FRUITFULL, AGAMOUS-like 8 (.1.... Potri.012G062300
[exp]
16.97 0.6752
AT1G56560 A/N-InvA alkaline/neutral invertase A, ... Potri.005G010800
[exp]
21.26 0.7449
AT4G22990 Major Facilitator Superfamily ... Potri.001G111400
[exp]
22.80 0.6494
AT4G27650 PEL1 PELOTA, Eukaryotic release fac... Potri.005G204500
[exp]
22.84 0.7013 PEL1.2
AT3G49800 BSD domain-containing protein ... Potri.007G006400
[exp]
25.21 0.7141
AT2G20010 Protein of unknown function (D... Potri.018G085900
[exp]
26.87 0.6740
AT1G54115 ATCCX4 cation calcium exchanger 4 (.1... Potri.001G167200
[exp]
28.24 0.6545

Potri.002G255400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.