Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20340 754 / 0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT4G28680 668 / 0 TYRDC, TYRDC1 L-TYROSINE DECARBOXYLASE 1, L-tyrosine decarboxylase (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G052900 [exp] 555 / 0 AT2G20340 555 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.013G052800 [exp] 554 / 0 AT2G20340 553 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.004G036200 [exp] 550 / 0 AT2G20340 596 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.016G114300 [exp] 548 / 0 AT2G20340 552 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022856 [exp] 786 / 0 AT2G20340 794 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10024966 [exp] 726 / 0 AT2G20340 706 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10018522 [exp] 549 / 0 AT2G20340 569 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10039740 [exp] 533 / 0 AT2G20340 568 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10012601 [exp] 88 / 1e-20 AT2G20340 100 / 1e-25 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10028592 [exp] 44 / 0.0003 AT1G43710 789 / 0.0 embryo defective 1075, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [poplar] [flax] PLP_aminotran PF00282 [poplar] [flax] Pyridoxal_deC Pyridoxal-dependent decarboxylase conserved domain
Representative CDS sequence Show only first row Show all	>Potri.002G255600.3 pacid=42778171 polypeptide=Potri.002G255600.3.p locus=Potri.002G255600 ID=Potri.002G255600.3.v4.1 annot-version=v4.1 ATGGAGAGTAAGGGGTTGCAACCAATGGATTCAGAGCAACTGAGAGAGAATGCACATAAAATGGTCGACTTTATTGCTGATTATTACAAATCCATTGAGA ATTTCCCTGTTCTCAGCCAAGTTGAGCCTGGATATCTACGCGAACTTCTGCCAGATTCTGCTCCAAATCAACCTGAAACGTTGCAAAATGTTCTTGATGA TGTTCAAGCAAAGATTTTACCGGGGGTGACCCATTGGCAAAGCCCGAGTTATTTTGCTTATTATCCTTCTAACAGTAGTGTTGCTGGATTTTTGGGAGAA ATGCTTAGTGCTGGTATTAATATGGTGGGTTTTAGCTGGATAACATCTCCTGCTGCAACTGAGCTTGAAATGATTGTTCTAGATTGGCTTGGTAAATTGC TCAAGCTACCTGAAGACTTTCTCTCTACTGGACAAGGTGGTGGAGTGATACAGGGCACTGCAAGTGAAGCTGTTCTAGTTGTGCTTCTGGCTGCTCGTGA TAGGGTCTTGAGGAAGCTTGGAAAAAATGCCCTTGAAAAGCTTGTTGTTTATGCATCCGATCAAACACACTCTGCTTTGCAAAAAGCCTGCCAGATAGGA GGGATCCATCCAGAAAATTGCAAGCTGCTAAAAACAGGCTCTCCAACAAATTATGCCCTTTCTCCAGATTTACTTGGTAAAGCAATTTCAGATGACATTT CCACTGGATTGGTCCCTTTCTTCTTATGTGCTACAGTAGGCACCACATCATCAACAGCTGTTGACCCTTTGCTTTCTCTAGGAAAGATTGCTAAGAATAA TGGAATATGGTTTCATGTGGATGCTGCATATGCTGGAAGTGCTTGTATTTGTCCAGAATATCGTTGTTACATTGATGGTGTTGAAGAAGCTGACTCTTTC AACATGAATGCTCATAAATGGTTTCTGACAAACTTTGATTGTTCGGCTCTTTGGGTAAAGGATAGAAATGCTTTAATCCAGTCCCTCTCTACGAATCCCG AGTTCCTGAAGAACAAAGCCTCTCAAGCAAACATGGTTGTGGACTACAAAGATTGGCAAATTCCTCTTGGACGTCGGTTTAGATCACTGAAACTGTGGAT GGTACTGCGGTTATATGGTTTGGAAAATCTACAGTGCTACATCAGAAATCATATCAACTTGGCTAAATATTTTGAAGGGCTTGTTGCTGCAGATTCAAGA TTTGAGGTTGTCACCCCTCGGATATTTTCATTGGTTTGTTTTCGCCTTCTACCTCCTAACAACAATGAAGATCACGGAAACAATCTGAACCATGACCTAT TAGATGCTGTAAACTCAACAGGGAAAATTTTCATATCACATACAGTTCTATCAGGCAAGTACATATTACGTTTTGCTGTGGGAGCACCATTGACTGAAGA GAGGCATGTTACTGCAGCATGGAAGGTTTTGCAAGATGAGGCCTCTGCTTTATTAGGAAGTCTATAG
AA sequence Show only first row Show all	>Potri.002G255600.3 pacid=42778171 polypeptide=Potri.002G255600.3.p locus=Potri.002G255600 ID=Potri.002G255600.3.v4.1 annot-version=v4.1 MESKGLQPMDSEQLRENAHKMVDFIADYYKSIENFPVLSQVEPGYLRELLPDSAPNQPETLQNVLDDVQAKILPGVTHWQSPSYFAYYPSNSSVAGFLGE MLSAGINMVGFSWITSPAATELEMIVLDWLGKLLKLPEDFLSTGQGGGVIQGTASEAVLVVLLAARDRVLRKLGKNALEKLVVYASDQTHSALQKACQIG GIHPENCKLLKTGSPTNYALSPDLLGKAISDDISTGLVPFFLCATVGTTSSTAVDPLLSLGKIAKNNGIWFHVDAAYAGSACICPEYRCYIDGVEEADSF NMNAHKWFLTNFDCSALWVKDRNALIQSLSTNPEFLKNKASQANMVVDYKDWQIPLGRRFRSLKLWMVLRLYGLENLQCYIRNHINLAKYFEGLVAADSR FEVVTPRIFSLVCFRLLPPNNNEDHGNNLNHDLLDAVNSTGKIFISHTVLSGKYILRFAVGAPLTEERHVTAAWKVLQDEASALLGSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Potri.002G255600 [exp]	0	1
AT3G27770			unknown protein		Potri.001G347400 [exp]	16.43	0.8503
AT1G50480		THFS	10-formyltetrahydrofolate synt...		Potri.001G010800 [exp]	22.11	0.8611	FTHFS1,Pt-THFS.2
AT5G59250			Major facilitator superfamily ...		Potri.001G244100 [exp]	27.11	0.8350
AT3G56160			Sodium Bile acid symporter fam...		Potri.008G021600 [exp]	29.39	0.8032
AT5G63860		UVR8	UVB-RESISTANCE 8, Regulator of...		Potri.007G100200 [exp]	32.24	0.8577
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G073016 [exp]	36.41	0.8260
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Potri.011G064700 [exp]	60.89	0.8257
AT4G00150	GRAS	ATHAM3, SCL6, L...	LOST MERISTEMS 3, ARABIDOPSIS ...		Potri.001G122800 [exp]	63.11	0.7878
AT1G13480			Protein of unknown function (D...		Potri.010G133500 [exp]	63.49	0.8054
AT1G79710			Major facilitator superfamily ...		Potri.001G041600 [exp]	69.28	0.8057

Compare expression of checked genes

Potri.002G255600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.