Plant FIBer expression Database

Potri.002G255800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G04120 2361 / 0 ATABCC5, ABCC5, ATMRP5 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2)
AT3G13080 1385 / 0 EST2, ATMRP3, ABCC3 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4)
AT3G60160 1337 / 0 ATMRP9, ABCC9 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1)
AT3G13090 1310 / 0 ATMRP8, ATABCC6 ATP-binding cassette C6, multidrug resistance-associated protein 8 (.1)
AT3G13100 1296 / 0 ATMRP7, ABCC7 ATP-binding cassette C7, multidrug resistance-associated protein 7 (.1)
AT3G60970 1130 / 0 ATMRP15, ABCC15 ATP-binding cassette C15, multidrug resistance-associated protein 15 (.1)
AT2G47800 1115 / 0 EST3, ATMRP4, ABCC4 ATP-binding cassette C4, multidrug resistance-associated protein 4 (.1)
AT3G62700 1103 / 0 ATMRP10, ABCC14 ATP-binding cassette C14, multidrug resistance-associated protein 10 (.1)
AT3G59140 1100 / 0 ATMRP14, ABCC10 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1)
AT3G21250 1082 / 0 ATMRP6, ABCC8 ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 6, ATP-binding cassette C8, multidrug resistance-associated protein 6 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G193400
[exp]
2675 / 0 AT1G04120 2323 / 0.0 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2)
Potri.001G362300
[exp]
1422 / 0 AT3G13080 2008 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4)
Potri.014G180100
[exp]
1390 / 0 AT3G60160 1930 / 0.0 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1)
Potri.001G362200
[exp]
1366 / 0 AT3G13080 1952 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4)
Potri.003G197200
[exp]
1341 / 0 AT3G13080 1832 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4)
Potri.003G198401
[exp]
1339 / 0 AT3G13080 1827 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4)
Potri.T125806
[exp]
1337 / 0 AT3G13080 1826 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4)
Potri.T124606
[exp]
1336 / 0 AT3G13080 1830 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4)
Potri.T124506
[exp]
1330 / 0 AT3G13080 1847 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022858
[exp]
2454 / 0 AT1G04120 2341 / 0.0 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2)
Lus10024965
[exp]
1883 / 0 AT1G04120 2176 / 0.0 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2)
Lus10018027
[exp]
1320 / 0 AT3G60160 1863 / 0.0 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1)
Lus10042023
[exp]
1311 / 0 AT3G60160 1869 / 0.0 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1)
Lus10013201
[exp]
1139 / 0 AT3G13080 1498 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4)
Lus10027567
[exp]
1134 / 0 AT3G59140 2001 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1)
Lus10039320
[exp]
1120 / 0 AT3G59140 1991 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1)
Lus10004896
[exp]
1043 / 0 AT3G21250 1727 / 0.0 ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 6, ATP-binding cassette C8, multidrug resistance-associated protein 6 (.1.2)
Lus10011498
[exp]
1032 / 0 AT2G47800 1796 / 0.0 ATP-binding cassette C4, multidrug resistance-associated protein 4 (.1)
Lus10017548
[exp]
1005 / 0 AT3G59140 1544 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0023 P-loop_NTPase PF00005 ABC_tran ABC transporter
CL0241 ABC_membrane PF00664 ABC_membrane ABC transporter transmembrane region
Representative CDS sequence
>Potri.002G255800.8 pacid=42777421 polypeptide=Potri.002G255800.8.p locus=Potri.002G255800 ID=Potri.002G255800.8.v4.1 annot-version=v4.1
ATGGGTATCGTTTTCTTGCTTAATAATATCAGCTCAGAATCAACCAACCGTGTTTTGAAGGCAATTCAAGGCCTGCCCACGTTGGAACTCGCCTCCATTT
GTGTGAATTTGACACTTTTTATCGTGTCTCTCTTCATTATCTCTGCAAGACAGATATTTGTCTGTGTTGGCAGAGTTAGAATCCTTAAGGATGATTCTAC
AGTTCCCAATCCGACTCCAATTCGAAGGTCTAGTGTAGACGGAGAGATTCGTGATGTTATAATCGGTACGGGTTTTAAGTTGTGTCTGTTTTGTTGTTTC
TATGTTTTGCTCTTGCAATTCTTGGTGTTGGGGTTTGATGGAGTTGCTCTGGTTAGAGAGGCTGTTAAGGGGAACGATGTGGATTGGTCTGAGATTTGTG
TACCTGCTGCACAAGGTTTGGCTTGGTTTGTCTTGAGCTTTTCAGCTCTTCAATGTAAATTTAAGCTGTCTGAGAAATTTCCTGTCTTGTTGAGGGTGTG
GTGGTTTTTCTCATTTTTGATTTGTTTGTGTACTTTGTATGTTGACGGGAGCAGTTTTTTTACTGAAGGTTCAAAGCATTTGAGTTCTCATGTTGTGGCG
AATTTTGCTGCAACCCCAGCTCTTGCTTTTCTATGTTTTGTTGCATTTAGAGGTGTTACTGGTATACAAGTTTGTAGGAACTCTGACCTTCAGGAGCCAT
TGCTTCTTGAAGAAGAGGCAGGGTGTCTTAAGGTCACTCCTTATAGCGATGCTGGGCTATTCAGCTTAGTAACCCTTTCTTGGTTAAACCCCCTTCTTTC
TATTGGCGCAAAGAGACCGCTAGAGCTTAAGGACATTCCCCTTCTTGCACCGAAAGATCGTGCCAAGACAAACTATAAGATTTTGAATTCAAATTGGGAA
AGAAGAAAAGCTGAAAATCCTTCCAAGCAGCCGTCTTTAGCTTGGGCAATTCTGAAGTCATTCTGGAAGGAAGCAGCTTGCAATGCCATCTTTGCCTTGT
TGAATACCTTTGTTTCATACGTTGGTCCGTACATGATTAGCTATTTTGTTGATTATCTGGGGGGTAAGGAGACTTTCCCTCACGAGGGCTATATTCTTGC
TGGGATATTCTTCTCAGCCAAGCTTGTGGAGACGTTAACGACCCGGCAATGGTATCTTGGGGTTGACATCTTGGGTATGCAAGTGAGGTCAGCTTTAACA
GCAATGGTGTACCGAAAGGGACTGAAGCTGTCGAGCTTGGCCAAGCAAAATCACACCAGTGGAGAGGTTGTTAACTACATGGCAATTGATGTCCAAAGAA
TAGGGGATTACTCTTGGTATCTCCATGATATATGGATGCTTCCCCTGCAAATAGTTCTTGCTCTTGCAATTTTGTATAAGAATGTTGGAATTGCCTCCTT
TGCAACTTTGATTGCCACCATTATCTCCATTGTTATCACAATCCCCGTGGCTAGGATACAAGAAGATTATCAAGACAAATTAATGGCTGCCAAGGATGAA
AGGATGAGGAAAACATCAGAGTGCCTCAGGAACATGAGGATTCTGAAGTTGCAGGCTTGGGAGGACAGGTATAGAGTAAAATTGGAGGAGATGCGAGGTG
TGGAGTTCCGGTGGCTTCGGAAAGCCCTCTATTCACAAGCTTTTATTACCTTCATTTTCTGGAGCTCTCCCATATTTGTTTCAGCTGTCACTTTTGGTAC
TTCTATATTGTTAGGTGATCAGCTCACAGCGGGAGGTGTTCTTTCTGCTTTGGCCACCTTCAGAATACTACAAGAACCACTGAGGAATTTCCCTGACTTG
GTGTCGATGATGGCCCAGACTAAAGTTTCTCTTGATAGAATTTCCGGATTCCTGCAGGAGGAAGAGTTGCAGGAAGATGCAACCATTGTTCTGCCTCGAA
GCATTACAAACTTGGCCATAGAAATTAAAGATGCTGCATTCTGCTGGGACCCTTCTTCTTCTTCTTCTTCTTCAAGGCCCACATTATCAGGGATACAAAT
GAAAGTCGAGAGGGGGATGCGGGTAGCTGTTTGTGGCGTGGTTGGTTCTGGCAAATCAAGCTTTCTCTCCTGCATCCTTGGCGAGATTCCCAAAATCTCT
GGCGAAGTGAGAATTTGTGGCACCGCTGCTTATGTCTCACAGTCAGCATGGATACAATCTGGAAATATTGAAGAAAATATTATATTCGGAAGTCCAATGG
ATAAAGCAAAGTATAAAAACGTAATCAATGCTTGTTCACTGAAAAAGGATTTGGAACTCTTCTCACATGGTGATCAGACAATTATTGGTGATAGAGGTAT
AAACTTGAGCGGTGGCCAGAAGCAGCGGGTTCAACTAGCAAGAGCATTATATCAAGATGCAGACATTTATTTGCTTGATGATCCCTTCAGTGCTGTTGAT
GCGCATACTGGTTCAGAGTTGTTCAAGGAATACATATTGACAGCATTAGCAAGTAAGACTGTGGTTTTTGTGACCCATCAGGTTGAATTTCTACCCGCCG
CCGATTTAATTCTGGTTCTCAAGGAAGGCCGCATAATACAGGCAGGGAAATATGATGAACTTTTGCAAGCAGGAACTGACTTTAACACCTTAGTCTCAGC
TCACAATGAAGCAATTGGGGCTATGGATATTCTAAATCACTCATCAGATGAATCAGATGAAAATTTGTTGTTGGATGGATCTGCCACACTACATAAAAAA
TGCAACGCGTCAGAATGTAGTATTGAAAGCTTAGCAAAGGAAGTGCAAGAGAGTGCATCAGCTTCAGATCAGAAAGCAATCAAAGAGAAAAAGAAAGGAA
AACGTTCAAGGAAAAAGCAGCTTGTTCAGGAAGAGGAAAGAGTAAGAGGAAGAGTCAACATGAAGGTTTACTTGTCCTATATGGCTGCAGCATATAAAGG
CTTATTGATTCCACTCATAATCCTTGCTCAAGCTTCATTTCAATTTCTTCAAATAGCTAGTAATTGGTGGATGGCCTGGGCAAATCCCCAAATGGAAGGA
GGCCAGCCTAGAGTGAGCCCTATGGTCCTTCTTGGTGTTTATATGGCCCTTGCTTTTGGGAGCTCGTGGTTTATATTTGTCAGGGCTGTTCTGGTTGCTA
CATTTGGTTTAGCAGCAGCTCAGAAATTGTTTCTGAAGATGCTTAGAAGTGTGTTCCGAGCACCAATGTCTTTTTTTGACTCTACTCCAGCTGGACGGAT
CTTGAATCGTGTGTCAATTGATCAAAGTGTAGTGGATCTTGATATTCCTTTCAGGCTTGGTGGATTTGCTTCAACTACCATACAGCTTTTTGGGATTGTT
GGTGTAATGACCAAAGTCACCTGGCAAGTTTTGTTGCTTGTTGTTCCAATGGCTGTTGCTTGCTTCTGGATGCAGAAATACTACATGGCTTCATCAAGGG
AACTGGTCCGTATTGTTAGCATCCAGAAATCTCCAATCATCCATCTTTTTGGTGAGACAATAGCAGGAGCAGCCACAATAAGGGGCTTTGGGCAAGAGAA
GAGGTTCCTGAAGAGGAATCTGTATCTTCTTGATTGTTTTGCTCGTCCATTCTTTTGCAGTCTTGCTGCTATCGAGTGGCTCTGCCTACGCATGGAATTG
CTTTCAACCTTTGTATTTGCTTTCTGCATGGTTTTACTTGTTAGCTTTCCCCAGGGAAGTATTGATCCAAGCATGGCAGGGCTTGCTGTGACATATGGCC
TTAATTTAAATGCACGCTTATCACGGTGGATACTTAGCTTTTGCAAGCTCGAAAATAAAATTATTTCCATTGAAAGGATCTATCAGTACAGCCAACTTCC
TGGTGAAGCCCCACCAGTTATAGAGGATTCTCGCCCTCCATCCTCGTGGCCAGAGAATGGAACAATTGATCTGATCGATTTAAAGGTTCGTTATGGTGAG
AATCTTCCTATGGTGCTTCATGGGATATCCTGTACTTTTCCTGGTGGGAACAAAATTGGAATTGTGGGACGAACTGGAAGTGGTAAATCTACACTGATAC
AAGCATTATTTCGGTTAATTGAACCAGCTAGTGGGAGGATCATTATAGACAACATCGATATTTCTTCAATTGGCCTCCATGATCTTCGTAGCCGCCTGAG
TATCATACCCCAGGATCCTACTTTATTCGAAGGGACCATTAGGGGAAACCTTGATCCCCTTGAAGAGCATTCAGATCAGGAAATTTGGCAGGCTCTTGAT
AAGTCTCAACTAGGACAGATAGTCCGACAGAAAGAGCAAAAGCTTGACTCACTAGTTGTGGAAAATGGAGATAACTGGAGTGTGGGACAGCGGCAACTTG
TTGCCCTGGGTCGTGCTTTGCTTAAGCAGGCAAGAATTCTGGTGCTTGATGAAGCGACAGCATCTGTTGATACAGCTACTGATAATCTCATTCAAAAGAT
TATCCGGACAGAGTTTAAGAATTGCACGGTGTGCACAATTGCACATCGAATCCCAACTGTCATTGACAGTGACCTTGTTCTGGTTCTCAGTGATGGTCTA
GTTGCAGAGTTTGATACTCCAACACGGCTGTTAGAGGATAAATCATCCATGTTTCTAAAGCTGGTAACAGAGTATTCTTCAAGGTCAAGTGGCATACCGG
ATTTTTGA
AA sequence
>Potri.002G255800.8 pacid=42777421 polypeptide=Potri.002G255800.8.p locus=Potri.002G255800 ID=Potri.002G255800.8.v4.1 annot-version=v4.1
MGIVFLLNNISSESTNRVLKAIQGLPTLELASICVNLTLFIVSLFIISARQIFVCVGRVRILKDDSTVPNPTPIRRSSVDGEIRDVIIGTGFKLCLFCCF
YVLLLQFLVLGFDGVALVREAVKGNDVDWSEICVPAAQGLAWFVLSFSALQCKFKLSEKFPVLLRVWWFFSFLICLCTLYVDGSSFFTEGSKHLSSHVVA
NFAATPALAFLCFVAFRGVTGIQVCRNSDLQEPLLLEEEAGCLKVTPYSDAGLFSLVTLSWLNPLLSIGAKRPLELKDIPLLAPKDRAKTNYKILNSNWE
RRKAENPSKQPSLAWAILKSFWKEAACNAIFALLNTFVSYVGPYMISYFVDYLGGKETFPHEGYILAGIFFSAKLVETLTTRQWYLGVDILGMQVRSALT
AMVYRKGLKLSSLAKQNHTSGEVVNYMAIDVQRIGDYSWYLHDIWMLPLQIVLALAILYKNVGIASFATLIATIISIVITIPVARIQEDYQDKLMAAKDE
RMRKTSECLRNMRILKLQAWEDRYRVKLEEMRGVEFRWLRKALYSQAFITFIFWSSPIFVSAVTFGTSILLGDQLTAGGVLSALATFRILQEPLRNFPDL
VSMMAQTKVSLDRISGFLQEEELQEDATIVLPRSITNLAIEIKDAAFCWDPSSSSSSSRPTLSGIQMKVERGMRVAVCGVVGSGKSSFLSCILGEIPKIS
GEVRICGTAAYVSQSAWIQSGNIEENIIFGSPMDKAKYKNVINACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVD
AHTGSELFKEYILTALASKTVVFVTHQVEFLPAADLILVLKEGRIIQAGKYDELLQAGTDFNTLVSAHNEAIGAMDILNHSSDESDENLLLDGSATLHKK
CNASECSIESLAKEVQESASASDQKAIKEKKKGKRSRKKQLVQEEERVRGRVNMKVYLSYMAAAYKGLLIPLIILAQASFQFLQIASNWWMAWANPQMEG
GQPRVSPMVLLGVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFLKMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLFGIV
GVMTKVTWQVLLLVVPMAVACFWMQKYYMASSRELVRIVSIQKSPIIHLFGETIAGAATIRGFGQEKRFLKRNLYLLDCFARPFFCSLAAIEWLCLRMEL
LSTFVFAFCMVLLVSFPQGSIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQLPGEAPPVIEDSRPPSSWPENGTIDLIDLKVRYGE
NLPMVLHGISCTFPGGNKIGIVGRTGSGKSTLIQALFRLIEPASGRIIIDNIDISSIGLHDLRSRLSIIPQDPTLFEGTIRGNLDPLEEHSDQEIWQALD
KSQLGQIVRQKEQKLDSLVVENGDNWSVGQRQLVALGRALLKQARILVLDEATASVDTATDNLIQKIIRTEFKNCTVCTIAHRIPTVIDSDLVLVLSDGL
VAEFDTPTRLLEDKSSMFLKLVTEYSSRSSGIPDF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G04120 ATABCC5, ABCC5,... MULTIDRUG RESISTANCE PROTEIN 5... Potri.002G255800
[exp]
0 1
AT1G15780 unknown protein Potri.003G028089
[exp]
4.24 0.8416
AT4G27220 NB-ARC domain-containing disea... Potri.011G124000
[exp]
4.89 0.8465
AT3G01720 unknown protein Potri.001G336400
[exp]
9.00 0.7884
AT3G12590 unknown protein Potri.010G207900
[exp]
14.07 0.7690
AT4G27220 NB-ARC domain-containing disea... Potri.018G145540
[exp]
17.54 0.7915
AT3G08850 ATRAPTOR1B, RAP... HEAT repeat ;WD domain, G-beta... Potri.016G132000
[exp]
24.28 0.7862
AT3G11420 Protein of unknown function (D... Potri.008G058900
[exp]
26.07 0.7261
AT1G17370 UBP1B oligouridylate binding protein... Potri.001G166100
[exp]
30.33 0.7142
AT3G17205 UPL6 ubiquitin protein ligase 6 (.1... Potri.010G150000
[exp]
32.49 0.7904
Potri.001G298233
[exp]
33.98 0.7832

Potri.002G255800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.