Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08390 61 / 2e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G190200 [exp] 80 / 1e-19 AT1G08390 158 / 9e-51 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038152 [exp] 0 / 1 AT1G08390 155 / 7e-50 unknown protein Lus10042503 [exp] 0 / 1 AT1G08390 156 / 5e-50 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [poplar] [flax] OB PF16100 [poplar] [flax] RMI2 RecQ-mediated genome instability protein 2
Representative CDS sequence Show only first row Show all	>Potri.002G256001.2 pacid=42777542 polypeptide=Potri.002G256001.2.p locus=Potri.002G256001 ID=Potri.002G256001.2.v4.1 annot-version=v4.1 ATGCAGAGAAGAGAGTATAGAAGAGAGGGAGGAGGAGGAATCGGTGGAGATCAGGAGATGGATTACAGTCTAGCAGCGCTTAAGCTACTGCGTGTCCAAT TGAAAGACACCAGTGAGACTCCTTCTCAAAACGCCTTGACTCTCGGCGGCATTCTCTTTCAACGCGCCTGGTTACAGGTTCCTCCTCTTCTCTTTTTACC GGTTCTCCATTTTACCCCTCCTCCATGTAATTCCTTTCTGTTGTTGTTCTCCAGGGAATTTTGGTCTCCAACGACGGTGACGGCCGTCTCCTTCTCGATG ACGGCACTGGTGTCATCGAGCTTTGCCTTTCTGGCGACTTCCGTCTCCGTCACTGGGACTCAGGTTCGTAAGATGGTTGATCTTTCGGCATTGCCGGATG AGAAGCAATGTGGTATCTTGAAGTTATGGAGGCGTACAAGCTTTTCTACCAGCCCTTAA
AA sequence Show only first row Show all	>Potri.002G256001.2 pacid=42777542 polypeptide=Potri.002G256001.2.p locus=Potri.002G256001 ID=Potri.002G256001.2.v4.1 annot-version=v4.1 MQRREYRREGGGGIGGDQEMDYSLAALKLLRVQLKDTSETPSQNALTLGGILFQRAWLQVPPLLFLPVLHFTPPPCNSFLLLFSREFWSPTTVTAVSFSM TALVSSSFAFLATSVSVTGTQVRKMVDLSALPDEKQCGILKLWRRTSFSTSP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08390			unknown protein		Potri.002G256001 [exp]	0	1
AT1G62530			Plant protein of unknown funct...		Potri.003G112000 [exp]	3.74	0.8059
AT3G57600	AP2_ERF	DREB2F	Integrase-type DNA-binding sup...		Potri.006G054500 [exp]	6.92	0.7897	Pt-DREB2.1
AT2G39090		APC7, AtAPC7	anaphase-promoting complex 7, ...		Potri.008G215100 [exp]	9.79	0.8096
AT5G61460		SMC6B, ATRAD18,...	STRUCTURAL MAINTENANCE OF CHRO...		Potri.003G107700 [exp]	16.61	0.7929
AT5G46070			Guanylate-binding family prote...		Potri.017G016800 [exp]	16.73	0.8100
AT1G17960			Threonyl-tRNA synthetase (.1)		Potri.010G096550 [exp]	17.43	0.8135
AT1G10930		ATSGS1, RECQL4A...	DNA helicase (RECQl4A) (.1)		Potri.003G015800 [exp]	20.83	0.8237
AT2G20110	CPP		Tesmin/TSO1-like CXC domain-co...		Potri.018G039300 [exp]	22.11	0.7272
AT4G17150			alpha/beta-Hydrolases superfam...		Potri.006G000700 [exp]	23.87	0.7387
AT2G33860	ARF	ARF3, ETT	ETTIN, AUXIN RESPONSE TRANSCRI...		Potri.011G059101 [exp]	27.38	0.8005

Compare expression of checked genes

Potri.002G256001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.