Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20370 964 / 0 AtMUR3, MUR3, KAM1 MURUS 3, KATAMARI 1, Exostosin family protein (.1) AT2G29040 549 / 0 Exostosin family protein (.1) AT4G13990 491 / 6e-169 Exostosin family protein (.1) AT2G32750 468 / 4e-160 Exostosin family protein (.1) AT2G32740 425 / 6e-144 ATGT13 ARABIDOPSIS GALACTOSYLTRANSFERASE 13, galactosyltransferase 13 (.1) AT2G31990 411 / 2e-138 Exostosin family protein (.1) AT1G68470 348 / 3e-114 Exostosin family protein (.1) AT5G62220 336 / 1e-108 ATGT18 glycosyltransferase 18 (.1) AT5G41250 334 / 2e-107 Exostosin family protein (.1) AT1G63450 337 / 4e-107 RHS8 root hair specific 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G032500 [exp] 551 / 0 AT2G29040 588 / 0.0 Exostosin family protein (.1) Potri.001G321000 [exp] 534 / 0 AT4G13990 660 / 0.0 Exostosin family protein (.1) Potri.014G147800 [exp] 524 / 0 AT4G13990 534 / 0.0 Exostosin family protein (.1) Potri.001G381900 [exp] 352 / 3e-115 AT1G68470 528 / 0.0 Exostosin family protein (.1) Potri.001G382200 [exp] 352 / 4e-115 AT1G68470 530 / 0.0 Exostosin family protein (.1) Potri.001G105300 [exp] 345 / 4e-111 AT1G63450 653 / 0.0 root hair specific 8 (.1) Potri.012G130700 [exp] 320 / 1e-102 AT5G62220 626 / 0.0 glycosyltransferase 18 (.1) Potri.015G132600 [exp] 312 / 2e-99 AT5G62220 619 / 0.0 glycosyltransferase 18 (.1) Potri.001G120800 [exp] 270 / 6e-84 AT4G22580 593 / 0.0 Exostosin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024961 [exp] 972 / 0 AT2G20370 959 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Lus10022862 [exp] 966 / 0 AT2G20370 951 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Lus10016532 [exp] 548 / 0 AT2G29040 546 / 0.0 Exostosin family protein (.1) Lus10001578 [exp] 542 / 0 AT2G29040 566 / 0.0 Exostosin family protein (.1) Lus10004967 [exp] 536 / 0 AT2G29040 573 / 0.0 Exostosin family protein (.1) Lus10006694 [exp] 489 / 1e-167 AT4G13990 617 / 0.0 Exostosin family protein (.1) Lus10001028 [exp] 472 / 1e-161 AT4G13990 499 / 1e-173 Exostosin family protein (.1) Lus10010677 [exp] 454 / 1e-154 AT2G32750 497 / 7e-173 Exostosin family protein (.1) Lus10007426 [exp] 449 / 1e-152 AT2G32750 505 / 5e-176 Exostosin family protein (.1) Lus10007037 [exp] 440 / 8e-150 AT4G13990 540 / 0.0 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [poplar] [flax] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Potri.002G256200.3 pacid=42780176 polypeptide=Potri.002G256200.3.p locus=Potri.002G256200 ID=Potri.002G256200.3.v4.1 annot-version=v4.1 ATGAGACGCCGGTCTCCGACAAATGTTTCTTCTGAGCTGATGGAGAAAGGGGGAGGAAAGAATCAACATAACCGCCTTTGTTTGTTGGCTTCGCTCTCTG CCTTCTTTTGGATTTTGTTATTGTATTTTCATTTTGTTGTTCTAGCAGGTAGCACTGTTGATAAATCTGTCAAATTGGATCCAACCCCGTTAAACCCAGA ATCAAAAACCCCTGCTTTTGTAACCGATAATCGGTTACCAGACAACCCTTTGAAAAGTAGCCCTAGTACTAGTGAGACCATCCCATCAAATGCTACTCCT AGTAGTACTGAAACCACCCCATTGAAAACTACCTCTACTAGTAGTCAAAAGATTGAGAAGTTCCCTTTTACGAGAGCTTTGAGAACGGTGGAAAATAAGA GTGATCCGTGTGGAGGGAGGTATATTTATGTCCATGATTTGCCTTCTAGGTTTAATGAGGATATGTTGAAGGAGTGTAGGAGTTTGAGTCTTTGGACCAA TATGTGTAAGTTCACAACTAATGCTGGGATGGGACCCCCACTGGAGAATGTTGAAGGGGTGTTTTCAAATACAGGTTGGTATGCCACAAATCAGTTCGCA GTAGATGTGATATTCAGTAATAGGATGAAGCAGTACGAGTGCTTGACAAATGATTCTTCTGTTGCTGCTGCGATTTTTGTGCCATTTTATGCGGGGTTTG ATATTGCTAGGTATCTTTGGGGGCATAATGTTTCGAGGAGGGATGCTGCTTCGCTTGATTTGGTTGACTGGCTCATGAAGAGGCCAGAGTGGGGGATTAT GCAAGGCAGGGATCATTTTTTGGTTGCTGGGAGGATTACATGGGATTTCAGGAGGCTAACGGATGAAGAATCGGATTGGGGTAATAAGCTTCTATTTTTG CCAGCTGCAAAAAATATGTCAATGCTTGTGGTCGAATCAAGTCCATGGAATGCTAATGATTTTGGCATTCCTTATCCGACCTATTTTCATCCCGCAAAGG ATGCTGATGTGTTTACTTGGCAAGACCGAATGAGGAAATTAGAGAGGAAATGGCTCTTTTCTTTTGCCGGGGCACCACGCCCTGATAACCCCAAATCAAT CAGAGGGCAGATCATAGATCAGTGCAAGAAGTCAAAGGTGGGCAAGCTGTTGGAATGTGATTTTGGGGAGAGCAAGTGTCATTCACCAAGCAGCATAATG CAGATGTTTCAGAGTTCTCTTTTCTGTCTCCAGCCTCAAGGTGATTCTTACACGCGGAGGTCAGCTTTCGACTCAATGCTGGCAGGTTGCATTCCTGTCT TCTTCCATCCTGGTTCGGCGTACACACAGTATACTTGGCATCTTCCAAAGAATTATACGACATATTCAGTGTTCATTCCAGAGGATGATATCCGTAAGAG AAATGTTAGCATTGAAGAACGGCTTAGTCAAATTTCTCCTGAGCAGGTCAAGATCATGAGGGATAATGTTATAAACCTCATTCCATCGCTTATATATGCA GATCCTCGCTCAAAATTGGAGACTCTTAAAGATGCTTTTGATGTCGCCGTACAGGCAGTCATTGACAAAGTTACAAGGTTGAGGAAGAACATTATTGAAG GCCGTACAGAATATGATAATTTTGTGGAGGAGAACAGTTGGAAATATGCATTGCTAGATGAAGGACAGCGTGAGGTGGGGGGTCATGAGTGGGATCCTTT CTTCTCAAAACCAAAGGATGGCAATGCTGATTCTGGTGGTTCATCTGCTGAAGCTGCAAAAAATTCATGGGAGAATGAGCGAAGAGGTCAGTCATGA
AA sequence Show only first row Show all	>Potri.002G256200.3 pacid=42780176 polypeptide=Potri.002G256200.3.p locus=Potri.002G256200 ID=Potri.002G256200.3.v4.1 annot-version=v4.1 MRRRSPTNVSSELMEKGGGKNQHNRLCLLASLSAFFWILLLYFHFVVLAGSTVDKSVKLDPTPLNPESKTPAFVTDNRLPDNPLKSSPSTSETIPSNATP SSTETTPLKTTSTSSQKIEKFPFTRALRTVENKSDPCGGRYIYVHDLPSRFNEDMLKECRSLSLWTNMCKFTTNAGMGPPLENVEGVFSNTGWYATNQFA VDVIFSNRMKQYECLTNDSSVAAAIFVPFYAGFDIARYLWGHNVSRRDAASLDLVDWLMKRPEWGIMQGRDHFLVAGRITWDFRRLTDEESDWGNKLLFL PAAKNMSMLVVESSPWNANDFGIPYPTYFHPAKDADVFTWQDRMRKLERKWLFSFAGAPRPDNPKSIRGQIIDQCKKSKVGKLLECDFGESKCHSPSSIM QMFQSSLFCLQPQGDSYTRRSAFDSMLAGCIPVFFHPGSAYTQYTWHLPKNYTTYSVFIPEDDIRKRNVSIEERLSQISPEQVKIMRDNVINLIPSLIYA DPRSKLETLKDAFDVAVQAVIDKVTRLRKNIIEGRTEYDNFVEENSWKYALLDEGQREVGGHEWDPFFSKPKDGNADSGGSSAEAAKNSWENERRGQS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20370		AtMUR3, MUR3, K...	MURUS 3, KATAMARI 1, Exostosin...		Potri.002G256200 [exp]	0	1
AT4G34150			Calcium-dependent lipid-bindin...		Potri.001G301900 [exp]	2.64	0.8533
AT5G65880			unknown protein		Potri.014G006850 [exp]	7.07	0.8383
AT2G38310		RCAR10, PYL4	regulatory components of ABA r...		Potri.016G125400 [exp]	16.73	0.7840
					Potri.005G096266 [exp]	17.66	0.8051
AT2G40330		RCAR9, PYL6	regulatory components of ABA r...		Potri.010G183900 [exp]	19.44	0.7673
					Potri.005G096332 [exp]	21.67	0.7985
AT5G55340			MBOAT (membrane bound O-acyl t...		Potri.008G145700 [exp]	23.51	0.7947
AT3G55130		ABCG19, ATWBC19	ATP-binding cassette G19, whit...		Potri.012G045100 [exp]	25.27	0.8295
AT1G75388		CPuORF5	conserved peptide upstream ope...		Potri.007G020000 [exp]	26.45	0.7604
AT2G35470			unknown protein		Potri.001G138300 [exp]	27.49	0.7778

Compare expression of checked genes

Potri.002G256200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.