Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-SDD1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04110 1019 / 0 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT2G05920 605 / 0 Subtilase family protein (.1) AT5G67360 583 / 0 ARA12 Subtilase family protein (.1) AT3G14240 579 / 0 Subtilase family protein (.1) AT5G51750 573 / 0 ATSBT1.3 subtilase 1.3 (.1) AT3G14067 562 / 0 Subtilase family protein (.1) AT4G34980 562 / 0 SLP2 subtilisin-like serine protease 2 (.1) AT1G01900 533 / 2e-179 SBTI1.1, ATSBT1.1 subtilase family protein (.1) AT2G04160 499 / 4e-166 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT5G59810 498 / 9e-166 ATSBT5.4 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G141200 [exp] 623 / 0 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Potri.014G074600 [exp] 610 / 0 AT1G01900 788 / 0.0 subtilase family protein (.1) Potri.012G131500 [exp] 600 / 0 AT5G51750 1102 / 0.0 subtilase 1.3 (.1) Potri.003G118800 [exp] 595 / 0 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.001G163600 [exp] 590 / 0 AT3G14240 1174 / 0.0 Subtilase family protein (.1) Potri.003G067000 [exp] 590 / 0 AT3G14067 969 / 0.0 Subtilase family protein (.1) Potri.001G167300 [exp] 589 / 0 AT3G14067 978 / 0.0 Subtilase family protein (.1) Potri.003G071800 [exp] 585 / 0 AT3G14240 1199 / 0.0 Subtilase family protein (.1) Potri.015G133800 [exp] 583 / 0 AT5G51750 1113 / 0.0 subtilase 1.3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022866 [exp] 1126 / 0 AT1G04110 1075 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Lus10024960 [exp] 1109 / 0 AT1G04110 1054 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Lus10034900 [exp] 608 / 0 AT2G05920 1107 / 0.0 Subtilase family protein (.1) Lus10033431 [exp] 605 / 0 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Lus10013187 [exp] 574 / 0 AT3G14240 1175 / 0.0 Subtilase family protein (.1) Lus10011089 [exp] 568 / 0 AT5G67360 1108 / 0.0 Subtilase family protein (.1) Lus10011537 [exp] 567 / 0 AT5G67360 1117 / 0.0 Subtilase family protein (.1) Lus10037449 [exp] 566 / 0 AT3G14240 1177 / 0.0 Subtilase family protein (.1) Lus10036546 [exp] 566 / 0 AT1G01900 822 / 0.0 subtilase family protein (.1) Lus10002995 [exp] 565 / 0 AT1G04110 584 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [poplar] [flax] Peptidase_S8 Subtilase family CL0364 [poplar] [flax] Leu-IlvD PF02225 [poplar] [flax] PA PA domain CL0570 [poplar] [flax] PPP-I PF05922 [poplar] [flax] Inhibitor_I9 Peptidase inhibitor I9
Representative CDS sequence Show only first row Show all	>Potri.002G256300.1 pacid=42779799 polypeptide=Potri.002G256300.1.p locus=Potri.002G256300 ID=Potri.002G256300.1.v4.1 annot-version=v4.1 ATGTCTAAGGAATCCAAAATACATCCCTTCTTTTCCATTCTTTTTTTCAACTTCTTTGCCTTCCTCCATGCACACACAGCACTCCAAACCTACATTGTTC AGCTCCATCCACATGGCACCACACGGCCCTTGTTCTCCTCCAAGTCTCGATGGCATCTCTCGTTTCTTAAAAGAACTGTTTCGTCTGAAGAACACCATTC CTCTCGGCTTCTTTACTCTTACAGTTCTGCCATGGAGGGTTTTGCGGCTATGCTCTCTGAATCAGAGATGGAGTCATTGCAAAAGTTGCCTGATGTTGTT GCTATTAGACCGGACATGAGGTTCCAAGTCCAGACAACATATTCCTACAAGTTCTTGGGACTTGGCCCCACAAGAGAAGATGCTTGGTACAAGTCTGGGT TTGGTCGTGGAGTGATAATTGGGGTGCTTGACACTGGAGTTTGGCCCGAGAGTCCAAGTTTCAATGATCAAGGAATGCCTCCGGTTCCCAAGAAGTGGCG AGGGATTTGCCAAAAAGGACAAGACTTTAATTCGTCGAACTGTAATAGAAAACTCATTGGTGCAAGGTTCTTCACTAAAGGTCACCGTATGGCTTCTACC TCAGCCTCACCAGAAAATGTCCAGGAATATGCATCACCAAGAGATTCGCATGGACATGGCACTCACACAACATCCACAGCTGGAGGAGTCTCAGTCCCGA TGGCGAGTGTGCTTGGTCTAGGTTCTGGTGTGGCTCGAGGCATGGCCCCTGGAGCACACGTTGCAATGTACAAAGTTTGCTGGTTCAGCGGTTGCTACAG CTCTGATATCCTAGCAGCAATGGACGTTGCGATTAGAGATGGAGTTGACGTCCTCTCCCTCTCTCTGGGTGGCTTTCCATTGCCACTTTTTGCAGATACC ATTGCGATTGGCAGTTTTCGGGCAATGGAGCATGGAATTTCAGTTGTATGTGCAGCAGGGAACAATGGCCCTATCCAAAACTCAGTTGCTAATGAAGCTC CATGGATTGCTACTATTGGTGCAAGTACACTTGATAGGAGATTTCCAGCTTTTGTCCAGTTGGACAATGGACAATTCCTTCATGGACAATCCATGTATCC CGGGAACCGGTTATCAAGCACCACAAAAGAACTTGAACTGGTTTATGTAACAGGCGGGGACAATGGGAGCGAATTTTGTTTCAGAGGTTCACTCCCAAGG GAAAAAGTTCTCGGGAAAATGGTGGTTTGTGACAGAGGTGTTAATGGGAGGACAGAAAAAGGACTTGCTGTGAAGGAATCTGGTGGGGCTGCAATGATCT TAGCCAATACCGCAATCAATCTGCAGGAGGACTCGGTTGATGTCCATGTCTTGCCTGCAACATCAATTGGTTTTAATGAAGCAGTTCGCTTGAAAGCTTA CTTAAACTCTACTAGTAAACCTCAAGCTCGAATTGTATATGGAGGAACTGTTATTGGGAAATCTAGAGCACCAGCAGTAGCGCAGTTTTCAGCTCGAGGA CCAAGTTATTCCAACCCCTCAATCCTCAAACCAGATGTAATTGCACCAGGAGTCAACATAATTGCAGCTTGGCCTCAAAATTTGGGTCCCTCCAGTCTCC CGGAAGATACTAGAAGGACAAATTTCACAGTCATGTCAGGGACATCCATGGCTTGTCCCCATGTTAGTGGAATTGCTGCACTCATCCGCTCAGCTCACCC CAAATGGACTCCTGCAGCTGTTAAATCTGCAATAATGACTACTGCAGATGTAACTGACCATTCAGGACACCCAATAATGGATGGAGATAAACCGGCAGGA GTTTTCGCCATTGGAGCTGGACATGTAAACCCAGAAAGAGCCCTGAGTCCAGGACTAATATATGATATCAGGCCAGATGATTACGTCACTCATCTATGCA CACTTAGATACACAAGATCAGACATTTTTGCTATCACACACAGGAATGTTAGTTGCAATGATTTATTGCAGATGAATAGGGGTTTCAGCCTCAATTATCC TTCCATTTCCATAATCTTCAAGCACGGAACAAGAAGTAAGATGATAAAGAGGCACGTAACGAATGTTGGAAGCCCTAATTCCATCTACTCAGTTGAAGTT ACAGCACCTGAAGGAGTCAAAGTGAGAGTAAGACCTCAAAGGCTAATTTTCAAGCACATAAATCAAAGTTTGAGTTACAAAGTATGGTTCATATCAAGAA AGAAAGCAGGAAGAGGGGAGGTAGACTTCGCACAAGGGCATTTGACATGGGTGCACTCTCAACATGGACTTTACAAGGTTAGAAGCCCCATTTCAGTGAC CTGGAAGTGA
AA sequence Show only first row Show all	>Potri.002G256300.1 pacid=42779799 polypeptide=Potri.002G256300.1.p locus=Potri.002G256300 ID=Potri.002G256300.1.v4.1 annot-version=v4.1 MSKESKIHPFFSILFFNFFAFLHAHTALQTYIVQLHPHGTTRPLFSSKSRWHLSFLKRTVSSEEHHSSRLLYSYSSAMEGFAAMLSESEMESLQKLPDVV AIRPDMRFQVQTTYSYKFLGLGPTREDAWYKSGFGRGVIIGVLDTGVWPESPSFNDQGMPPVPKKWRGICQKGQDFNSSNCNRKLIGARFFTKGHRMAST SASPENVQEYASPRDSHGHGTHTTSTAGGVSVPMASVLGLGSGVARGMAPGAHVAMYKVCWFSGCYSSDILAAMDVAIRDGVDVLSLSLGGFPLPLFADT IAIGSFRAMEHGISVVCAAGNNGPIQNSVANEAPWIATIGASTLDRRFPAFVQLDNGQFLHGQSMYPGNRLSSTTKELELVYVTGGDNGSEFCFRGSLPR EKVLGKMVVCDRGVNGRTEKGLAVKESGGAAMILANTAINLQEDSVDVHVLPATSIGFNEAVRLKAYLNSTSKPQARIVYGGTVIGKSRAPAVAQFSARG PSYSNPSILKPDVIAPGVNIIAAWPQNLGPSSLPEDTRRTNFTVMSGTSMACPHVSGIAALIRSAHPKWTPAAVKSAIMTTADVTDHSGHPIMDGDKPAG VFAIGAGHVNPERALSPGLIYDIRPDDYVTHLCTLRYTRSDIFAITHRNVSCNDLLQMNRGFSLNYPSISIIFKHGTRSKMIKRHVTNVGSPNSIYSVEV TAPEGVKVRVRPQRLIFKHINQSLSYKVWFISRKKAGRGEVDFAQGHLTWVHSQHGLYKVRSPISVTWK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Potri.002G256300 [exp]	0	1	Pt-SDD1.1
AT3G47570			Leucine-rich repeat protein ki...		Potri.017G151400 [exp]	3.46	0.9549
AT4G13640	GARP	UNE16	unfertilized embryo sac 16, Ho...		Potri.017G054800 [exp]	5.74	0.8648
AT2G30300			Major facilitator superfamily ...		Potri.013G154000 [exp]	6.32	0.9388
AT5G24850		CRY3	cryptochrome 3 (.1)		Potri.006G277500 [exp]	7.74	0.9341
					Potri.004G140000 [exp]	8.94	0.9299
AT2G30520		RPT2	ROOT PHOTOTROPISM 2, Phototrop...		Potri.019G131600 [exp]	11.22	0.8932	RPT2.3
AT3G47570			Leucine-rich repeat protein ki...		Potri.017G145200 [exp]	11.61	0.9298
AT3G27770			unknown protein		Potri.001G347400 [exp]	12.12	0.8828
AT3G47570			Leucine-rich repeat protein ki...		Potri.017G152500 [exp]	17.32	0.9261
AT2G29100		ATGLR2.9	GLUTAMATE RECEPTOR 2.9, gluta...		Potri.004G052400 [exp]	18.00	0.9152

Compare expression of checked genes

Potri.002G256300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.