Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20390 196 / 4e-64 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G193150 [exp] 77 / 1e-18 AT2G20390 47 / 7e-08 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022869 [exp] 201 / 5e-66 AT2G20390 196 / 2e-64 unknown protein Lus10024957 [exp] 167 / 1e-53 AT2G20390 126 / 7e-38 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0455 [poplar] [flax] MIM-OM_import PF08695 [poplar] [flax] Coa1 Cytochrome oxidase complex assembly protein 1
Representative CDS sequence Show only first row Show all	>Potri.002G256700.1 pacid=42779197 polypeptide=Potri.002G256700.1.p locus=Potri.002G256700 ID=Potri.002G256700.1.v4.1 annot-version=v4.1 ATGTTGGCAAGAAGATTTATTTCTTTGTTCAAGAACTCCCCAAGTTCCCAAACTTCAAGTGGAGGGAAGTACTTGGATGAAGGAAAGAGCAACAAGTCTT TTGGTCGAAAGGCAGTTACTTTTGTGTTGGTTACGGTTACAGGTGGTGTGGCCTTGAGTGCTCTTGATGATCTTGCTATTTATCATGGCTGTAGCAGCAA GGCCATGGAGAAAGCCAGTAATAGTCAAGCAATCAAAGATGCTATTGGGGAGCCGATTGTCAAAGGTCCATGGTACAATGCATCTCTTGCTGTAGCTCAC AAGAGGCAGTCTGTGTCTTGCACATTTCCTGTGTCTGGACCACATGGCAATGGAGTATTCCAATTGAAGGCAGTTCGTAATGGAGATGACAGTTGGTTTT CATTTTTCCTTCCTCGGGACTGGGAAATCCTGATAATGGAAGCTCTCCTTCATATCCCTTCTAATGAAGAAAGGCAGCAAACCATGCGGATTAGTCTCTC AGACAGCTTCTCATCTCCAGCTTGTAACACATGCACTGAATGCCCGCAGCAGGAATCCCAAAATCCAGAGAAGAATTGA
AA sequence Show only first row Show all	>Potri.002G256700.1 pacid=42779197 polypeptide=Potri.002G256700.1.p locus=Potri.002G256700 ID=Potri.002G256700.1.v4.1 annot-version=v4.1 MLARRFISLFKNSPSSQTSSGGKYLDEGKSNKSFGRKAVTFVLVTVTGGVALSALDDLAIYHGCSSKAMEKASNSQAIKDAIGEPIVKGPWYNASLAVAH KRQSVSCTFPVSGPHGNGVFQLKAVRNGDDSWFSFFLPRDWEILIMEALLHIPSNEERQQTMRISLSDSFSSPACNTCTECPQQESQNPEKN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20390			unknown protein		Potri.002G256700 [exp]	0	1
AT5G37850		SOS4, ATSOS4	SALT OVERLY SENSITIVE 4, pfkB-...		Potri.017G129000 [exp]	15.09	0.6427
AT3G61440		ATCYSC1, ARATH;...	BETA-SUBSTITUTED ALA SYNTHASE ...		Potri.014G086300 [exp]	34.64	0.6163
AT1G26320			Zinc-binding dehydrogenase fam...		Potri.007G143800 [exp]	36.87	0.6803
AT2G38740			Haloacid dehalogenase-like hyd...		Potri.001G147300 [exp]	56.83	0.6322
AT1G75400			RING/U-box superfamily protein...		Potri.005G231500 [exp]	86.42	0.5870
AT5G01750			Protein of unknown function (D...		Potri.016G131800 [exp]	97.14	0.5971
AT3G58040		SINAT2	seven in absentia of Arabidops...		Potri.016G059700 [exp]	125.49	0.5757
AT5G46330		FLS2	FLAGELLIN-SENSITIVE 2, Leucine...		Potri.004G065400 [exp]	136.38	0.5675	FLS2.2
AT5G05610	Alfin	AL1	alfin-like 1 (.1.2)		Potri.006G100900 [exp]	141.21	0.5635
AT3G52880		ATMDAR1	monodehydroascorbate reductase...		Potri.006G114800 [exp]	147.72	0.5622	MDHAR1.1

Compare expression of checked genes

Potri.002G256700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.