Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04350 210 / 7e-65 Plant protein of unknown function (DUF946) (.1) AT5G18490 204 / 9e-63 Plant protein of unknown function (DUF946) (.1) AT1G04090 201 / 3e-61 Plant protein of unknown function (DUF946) (.1) AT5G43950 193 / 2e-58 Plant protein of unknown function (DUF946) (.1) AT2G44260 146 / 8e-41 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) AT2G44230 141 / 5e-39 Plant protein of unknown function (DUF946) (.1) AT3G01870 130 / 9e-35 Plant protein of unknown function (DUF946) (.1) AT3G01880 124 / 2e-32 Plant protein of unknown function (DUF946) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G193100 [exp] 263 / 3e-85 AT5G43950 681 / 0.0 Plant protein of unknown function (DUF946) (.1) Potri.013G048300 [exp] 219 / 3e-68 AT3G04350 755 / 0.0 Plant protein of unknown function (DUF946) (.1) Potri.009G025102 [exp] 147 / 2e-41 AT2G44260 746 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Potri.001G232500 [exp] 146 / 1e-40 AT2G44260 729 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Potri.018G087400 [exp] 144 / 3e-40 AT2G44260 691 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024955 [exp] 222 / 3e-69 AT5G43950 696 / 0.0 Plant protein of unknown function (DUF946) (.1) Lus10022871 [exp] 219 / 3e-68 AT5G43950 693 / 0.0 Plant protein of unknown function (DUF946) (.1) Lus10000813 [exp] 201 / 4e-61 AT3G04350 761 / 0.0 Plant protein of unknown function (DUF946) (.1) Lus10027952 [exp] 192 / 1e-57 AT3G04350 754 / 0.0 Plant protein of unknown function (DUF946) (.1) Lus10017579 [exp] 138 / 6e-38 AT2G44260 553 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Lus10017580 [exp] 134 / 4e-36 AT2G44260 587 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Lus10033542 [exp] 131 / 4e-35 AT2G44260 585 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Lus10017582 [exp] 129 / 3e-34 AT2G44260 582 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06101 [poplar] [flax] Vps62 Vacuolar protein sorting-associated protein 62
Representative CDS sequence Show only first row Show all	>Potri.002G256802.1 pacid=42776775 polypeptide=Potri.002G256802.1.p locus=Potri.002G256802 ID=Potri.002G256802.1.v4.1 annot-version=v4.1 ATGCCAAACCTTGAGCAAATCCATGCACTCATCAAGCACTACGGCCACGGGCCTTCGGTTTTCTTTCATCCTGATGAAGTCTATTTGCCATCTTCTGTGT CACGGTTTTTCAAAAATGGAGCACTCTTGTACAGAGCTGGGGATTTGTCCGGCGAACCCATAGATGCTGGGGGCACTAATTTTCCAGGCGGGGGGGAAAA TGATGGGCATTTTGGAGAGACTTGCCTTCCAATGACAGAAGACATATTGTCAAACAGGGCAACTTGGAACGTGCTAAACTTTACGTCCATGCGAAGCCTT GCTCTAGTTGGGACTTTCACTGATCTTGCAATGTGGGTTTTCTATCCCTTCAATGGACCAATTGAATATTGCTCTAGGCAGAATTGGGCAGCATGTAGGC GATGGGGAGCATTTCACTCCCGCGTATGCAACTTTACTGGACAGCTATGGAACAGTGGCGGTGAAAGTGTTGAAGCTTATGATTTGGAGTACATAGCGGG GAACAGAGCTACTGTTTACTCGTCAAAAAGTGGACATGCTAGCTTCCCTCATTCCGGGTGTTACATTCAGGGTTCCCCTAAACTTCGGACAGGAATAAGG AATGATGCAGCACGTAGTAGTTTATACGTGGATTCAAGCATCCATTATGAAAATATTGCAGCAGAGTATCTTCAAGAACTGAGCTAG
AA sequence Show only first row Show all	>Potri.002G256802.1 pacid=42776775 polypeptide=Potri.002G256802.1.p locus=Potri.002G256802 ID=Potri.002G256802.1.v4.1 annot-version=v4.1 MPNLEQIHALIKHYGHGPSVFFHPDEVYLPSSVSRFFKNGALLYRAGDLSGEPIDAGGTNFPGGGENDGHFGETCLPMTEDILSNRATWNVLNFTSMRSL ALVGTFTDLAMWVFYPFNGPIEYCSRQNWAACRRWGAFHSRVCNFTGQLWNSGGESVEAYDLEYIAGNRATVYSSKSGHASFPHSGCYIQGSPKLRTGIR NDAARSSLYVDSSIHYENIAAEYLQELS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G04350			Plant protein of unknown funct...		Potri.002G256802 [exp]	0	1
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Potri.003G087000 [exp]	6.00	0.9623
AT4G39720			VQ motif-containing protein (....		Potri.006G006300 [exp]	10.19	0.9479
AT1G05010		ACO4, EAT1, EFE	ethylene forming enzyme, ethyl...		Potri.002G224100 [exp]	11.22	0.9651	ACO2,ACO1.1
AT4G37290			unknown protein		Potri.007G049400 [exp]	13.52	0.9638
AT4G27290			S-locus lectin protein kinase ...		Potri.001G413400 [exp]	19.26	0.9362
AT5G47910		ATRBOHD, RBOHD	respiratory burst oxidase homo...		Potri.001G070900 [exp]	20.59	0.9007
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Potri.001G147200 [exp]	23.51	0.9225
AT5G15720		GLIP7	GDSL-motif lipase 7 (.1)		Potri.017G102100 [exp]	24.49	0.9554
AT4G35030			Protein kinase superfamily pro...		Potri.002G019300 [exp]	26.05	0.9078
AT1G72680		ATCAD1	CINNAMYL ALCOHOL DEHYDROGENASE...		Potri.003G196700 [exp]	26.49	0.9543

Compare expression of checked genes

Potri.002G256802 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.