Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43960 402 / 4e-137 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) AT3G25150 193 / 6e-56 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) AT5G60980 167 / 2e-46 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) AT5G48650 125 / 3e-31 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1) AT1G13730 110 / 2e-26 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1) AT3G07250 80 / 1e-15 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein (.1) AT2G03640 76 / 8e-15 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain AT1G69250 72 / 1e-13 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) AT3G49430 44 / 0.0002 SRP34A, SR34a, At-SR34a Serine/Arginine-Rich Protein Splicing Factor 34a, SER/ARG-rich protein 34A (.1.2.3) AT1G03457 42 / 0.0008 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G192900 [exp] 658 / 0 AT5G43960 392 / 3e-133 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.010G065500 [exp] 384 / 6e-130 AT5G43960 310 / 3e-101 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.015G058700 [exp] 190 / 8e-55 AT5G60980 382 / 9e-129 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.017G094600 [exp] 180 / 3e-51 AT5G60980 286 / 6e-92 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.002G246600 [exp] 179 / 2e-50 AT3G25150 374 / 8e-125 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.008G096700 [exp] 150 / 3e-40 AT2G03640 219 / 3e-66 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain Potri.010G157800 [exp] 132 / 8e-34 AT1G13730 219 / 4e-66 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1) Potri.001G057500 [exp] 44 / 2e-05 AT1G27970 228 / 4e-79 nuclear transport factor 2B (.1.2) Potri.014G135540 [exp] 45 / 7e-05 AT4G03110 513 / 0.0 RNA-binding protein-defense related 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022873 [exp] 438 / 2e-151 AT5G43960 377 / 1e-127 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Lus10023722 [exp] 308 / 1e-99 AT5G43960 266 / 2e-83 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Lus10024953 [exp] 198 / 4e-61 AT5G43960 159 / 8e-47 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Lus10014469 [exp] 185 / 1e-53 AT5G43960 156 / 4e-43 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Lus10003144 [exp] 186 / 5e-53 AT3G25150 385 / 2e-129 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Lus10022765 [exp] 181 / 2e-51 AT3G25150 408 / 1e-138 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Lus10025906 [exp] 173 / 3e-47 AT3G25150 363 / 4e-118 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Lus10037066 [exp] 110 / 9e-26 AT2G03640 248 / 2e-77 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain Lus10036918 [exp] 106 / 2e-24 AT2G03640 250 / 4e-78 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain Lus10026668 [exp] 95 / 9e-21 AT2G03640 255 / 5e-80 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0051 [poplar] [flax] NTF2 PF02136 [poplar] [flax] NTF2 Nuclear transport factor 2 (NTF2) domain
Representative CDS sequence Show only first row Show all	>Potri.002G257000.1 pacid=42776744 polypeptide=Potri.002G257000.1.p locus=Potri.002G257000 ID=Potri.002G257000.1.v4.1 annot-version=v4.1 ATGGCGAGTCCATATCCACCGCCGGTAACCGTAAAAGCAGTTCAGGTTGGTTCGTACTTTGTTGGGCAGTATTATCAGGTACTTCAACAGCATCCAGATC TCGTGCATCGATTCTATGCCGATGGCAGCACCATCATTCGTATCGATGCCCATTCTACCGATTCTGCTAACACAATGCTGCAAATTCATGCGCTTGTCAT GTCTTTAAACTTTTCTGCTATTGAAATCAAGACTATCAATTCGCTCGAGTCGTGGAATGGAGGTGTTCTGGTTATGGTGTCTGGTTCTGTTAAGACCAAG GATTTTGTTAATAGAAGGAAATTTGTTCAGACCTTTTTCCTGGCTCCACAGGAGAAAGGTTACTTTGTTCTCAACGATATCTTTCACTTTGTTGATGATG GAGTTGTTTACCAACAAAATCTAGCACCCAGGCCATCTGAAAACATGTACATGCAACATCCAGTGGCTGTATCATCTGACGAGACTTTTGATGCGCAATT AGATTCTTCTCACTCTCCTCCAGAGCCTCCAGTTTCTGACTATGTTTTGGAGGAAGAAGCTAGAGAATATGTGAACTCAGTTCGCATAGATGATGATCCA GTTGACAAGTACAGTCTCCCAGAGCAACAAGAGCAACAAGACTTTGAGACTGAAATTGTAGTAGATGAAACTCCTGTAGTGGAAACACCTGCTTCATTTC AAAGTGCTGTAAATGTTGGACAAGATTTTCCAACTGCTGCTCCAGAAGAACCCATGGAAGAGCCTCAAAAGAAAACTTACGCTTCAATACTACTAGTTTC CAAGGGGCCGTCTTCTTCATCAGTTGCCACCCAGCCACCTGTTAACAAGAGTGCCCCTACAACTTCTGATTGGAATCATATGCCAACAACCACTGCACTG CAGCCAGAATCTGTATCATATGCAACAGAAACTGGAGTTGAGGCTACAGAGGAAAGCTTTGGAGTAGACGAAGGTGAACCAAAATCTGTCTATGTGAGAA ACTTGCCCTCTGATGTTACTGCTGCAGAAATTGAGGAGGAGTTTAAACACTTCGGTAGAATCAAACCTGATGGTGTTTTCGTTAGGAATCGCAAGGATGT TGTTGGTGTTTGCTATGCTTTTGTTGAGTTTGAAGATCTTCTAAGTGTTCAAAATGCAATCAAGGCATCTCCAATACAGCTGGCTGGAAGGCCAGTCTAC ATTGAGGAGCGAAGACCCAGCACCAGTATTGCATCTCGAGGTGGAAGAGGAAGAGGGAGAGGTTACCAAACAGATGCACCAAGGGGGCGTTTTGGTGGCC GTAGTTTGGGAAGGGGAGGCAATCAAGATGGTGGTGACTACAACAGAGCAAGAGGCAATGGTTTCTATCAGCGTGCTTTCTGA
AA sequence Show only first row Show all	>Potri.002G257000.1 pacid=42776744 polypeptide=Potri.002G257000.1.p locus=Potri.002G257000 ID=Potri.002G257000.1.v4.1 annot-version=v4.1 MASPYPPPVTVKAVQVGSYFVGQYYQVLQQHPDLVHRFYADGSTIIRIDAHSTDSANTMLQIHALVMSLNFSAIEIKTINSLESWNGGVLVMVSGSVKTK DFVNRRKFVQTFFLAPQEKGYFVLNDIFHFVDDGVVYQQNLAPRPSENMYMQHPVAVSSDETFDAQLDSSHSPPEPPVSDYVLEEEAREYVNSVRIDDDP VDKYSLPEQQEQQDFETEIVVDETPVVETPASFQSAVNVGQDFPTAAPEEPMEEPQKKTYASILLVSKGPSSSSVATQPPVNKSAPTTSDWNHMPTTTAL QPESVSYATETGVEATEESFGVDEGEPKSVYVRNLPSDVTAAEIEEEFKHFGRIKPDGVFVRNRKDVVGVCYAFVEFEDLLSVQNAIKASPIQLAGRPVY IEERRPSTSIASRGGRGRGRGYQTDAPRGRFGGRSLGRGGNQDGGDYNRARGNGFYQRAF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G43960			Nuclear transport factor 2 (NT...		Potri.002G257000 [exp]	0	1
AT2G20580		RPN1A, AtRPN1a	26S proteasome regulatory subu...		Potri.017G014800 [exp]	2.64	0.7936
AT2G45060			Uncharacterised conserved prot...		Potri.014G058700 [exp]	3.46	0.7957
AT5G45620			Proteasome component (PCI) dom...		Potri.003G098400 [exp]	4.69	0.8180
AT5G58290		RPT3	regulatory particle triple-A A...		Potri.006G029100 [exp]	7.07	0.7889
AT1G24510			TCP-1/cpn60 chaperonin family ...		Potri.008G182300 [exp]	9.43	0.8249
AT2G44100		AT-GDI1, ATGDI1	guanosine nucleotide diphospha...		Potri.017G001200 [exp]	9.59	0.8089	Pt-GDI.1
AT1G18070			Translation elongation factor ...		Potri.019G062500 [exp]	13.07	0.8162
AT4G00090			Transducin/WD40 repeat-like su...		Potri.002G148100 [exp]	14.56	0.6631
AT3G16090		AtHrd1A	homolog of yeast Hrd1, RING/U-...		Potri.019G051500 [exp]	15.55	0.6877
AT5G16760		AtITPK1	inositol \(1,3,4\) P3 5/6-kina...		Potri.019G047200 [exp]	17.88	0.7099

Compare expression of checked genes

Potri.002G257000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.