Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04080 875 / 0 PRP39 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT5G46400 415 / 2e-130 ATPRP39-2 ,AT PRP39-2 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G17760 52 / 1e-06 CSTF77, ATCSTF77 ARABIDOPSIS THALIANA CLEAVAGE STIMULATION FACTOR 77, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G24270 51 / 3e-06 EMB140 EMBRYO DEFECTIVE 140 (.1.2) AT5G41770 47 / 6e-05 crooked neck protein, putative / cell cycle protein, putative (.1) AT5G45990 45 / 0.0003 crooked neck protein, putative / cell cycle protein, putative (.1) AT3G13210 43 / 0.0008 crooked neck protein, putative / cell cycle protein, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G192800 [exp] 1328 / 0 AT1G04080 820 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.003G106200 [exp] 55 / 2e-07 AT1G17760 1037 / 0.0 ARABIDOPSIS THALIANA CLEAVAGE STIMULATION FACTOR 77, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G137200 [exp] 44 / 0.0004 AT5G41770 1150 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1) Potri.001G094400 [exp] 44 / 0.0005 AT5G41770 1117 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024952 [exp] 1039 / 0 AT1G04080 879 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10022874 [exp] 1016 / 0 AT1G04080 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10015257 [exp] 363 / 3e-111 AT5G46400 384 / 2e-119 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025377 [exp] 233 / 2e-65 AT5G46400 392 / 2e-122 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003684 [exp] 52 / 2e-06 AT1G17760 971 / 0.0 ARABIDOPSIS THALIANA CLEAVAGE STIMULATION FACTOR 77, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10041477 [exp] 50 / 7e-06 AT5G41770 1161 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1) Lus10034294 [exp] 48 / 4e-05 AT5G41770 1153 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G257100.2 pacid=42779256 polypeptide=Potri.002G257100.2.p locus=Potri.002G257100 ID=Potri.002G257100.2.v4.1 annot-version=v4.1 ATGGGAGATAGTGAGACAGTAGTAACTGAACCGTCGGCAGTCATGGATTATCCGGCAGCTGGGTATGCGTCTACTGGCTACGCTGATTCTGGTTCAGTTG TTGTTCCTGGCCCTGGTGATTTTAATGTGGAGGGCACTGGAAATTTTGCTGCTTCTACTGTTGCAGCACAGGGAGGTCATACGGGAAATACGTATGGTGC GGACTCTAGTTCTGTTGTACCAGAGGCTCGTGTTGGAATGAACAGTAGTGCTGAAAACGCAGCTGCTGGTGGTTATGATTCGGCTGTGAATGGAAATGTT GGAACTGAAGCTGGAGTTGCTGTATCAGTTGAGAATGGAAATGCTGGAGAGGTTTTGGGTGGAGCTGCTGCTGAGCAGCATTTTGTGGATGGTTCTGTGC CAGAAATGTCAGCTGAAGAGGACCACCTGTGGAGCATTGTGAAGGCTAATTCTTTGGATTTTGATGCATGGACTGCCTTAATAGATGAGACAGAGAAGGT GGCTGGGGACAGGATATTGAAAATTCGAAAAGTATATGATGCTTTTTTGGTGGAATTTCCTTTGTGTTATGGTTATTGGAAGAAGTATGCAGATCATGAA GCACGCCTTGGTTTTATGGACAAAGTTGTTGAGGTATATGAACGGGCTGTTCTTGGGGTCACATATTCGGTGGACATTTGGTTGCATTATTGCATGTTTG CCATATCCACATATGGAGATCCAGAGACTGTTAGAAGGCTTTTTGAGCGAGGATTAGCTTATGCTGGAACAGATTATATGTCTTATCCCCTCTGGGATAA GTACATTGAATACGAAGAGGTGCATGCAGAGTGGGGCCGTGTTGCCATGATATACACACGGATATTGGAGATTCCTAACAGAAAGCTGGATGATTATTTC AATAGATTTAAGGCTTTTGCTGCAAGCCGGCCTTTGTCAGAATTAAAGACTGCTGAGGAAGCTGCTGCTGTAGCACCTGTACTTTCGGAGGATAGAAGCC AAGCAGACGAGGGAGAGGTTCATCCTGATGCAGCTGAACAGCCTTCTAAACCTGTAAATGCTGGCTTAACAGAAGCAGAGGAGTTGGAGAAGTATATCGC CATTAGAGAGGAAATATACAAGAAAGCTAAAGAGTTCGATAATAAGATCTTTGACTTTGAAAATGCTATTAGGAGGCCCTACTTTCATGTGCGGCCCCTT AATGTTGCAGAGCTCGAAAACTGGCATAACTATCTGGATGATATAGAAAGAGAGGATGACTTTAATAAGGTGGTCAAGCTATATGAAAGATGTGTAATTG CATGTGCTAATTATACCGAGTATTGGATACGCTATGTCTTGTGCATGGAAGCCACTGGGAACATGGATCTTGCAAATAATGCTCTTGCTCGTGCAACTCA AGTATTTGTCAAGAGACAACCAGAGATTCACATTTTTGCTGCCCGTCTCAAAGAGCAAAATGGAGATGTATCTGGTGCTCGAGCTGCTTACCAAGTTGTA CATGCTGAAATTGCACCTGGTCTTCTTGAAGCAATTATTAAGCATGCAAACATGGAGCATCGATTGGGGAATCTTGAAGATGCCTTCTCCTTGTATGAAC AGGCCATAGCCATTGAAAAGGGAAAAGAGCATTCACAAGTGTTGCCAGCATTGTATGCACAATATGCTCGATTCGTATATTTGGCATCAAACAATGTAGA GAAAGCCAGGGAGATTCTATTAGAAGGACTTGAGAATGCCCAATATTCAAAACCACTTCTCGAGGCTCTGATACATTTTGAGACATTTCTGCCACTTCCA AAGCGAATTGATTATCTTGATTCACTGGTAGATAAGTTCATTTTGCCCAGCTCAGACAGCGTCAATGCTGCTAGTGCTGCTGAGAGGGAAGAACTATCCT GCATTTTCTTGGAGTTTTTAGGTATATTTGGAGATGCTCAATCTATAAAGAAGGCTGCTGATCGGCATGCCAAGTTCTTCTTACCCCACAGGAGCAAGTC AGAGTTGAAAAAGCGCCACGCGGAGGATTACCTAGCTTCAGACAAGGCAAAAATGGCCAAACCTTACCCTGATGCAACTTCACCTGCACAGTCTCTGATG GGTGCATATGCAAGTGCACAGAACCAATGGACAGCTGGTTATGGTGTACAGCCTCAAGCTTGGCCACCGGCTACCCAAGTACAGACTCAACAGTGGGCTC CAGGCTATAACCAACAAGCTGCATATGGCGCATATAGTGGTTATGGAGGCAGCTACCCGAATCCCCAAGCTCCTACATCAGTTGCACAAGGTGCAGCTTA TGGTGGCTATCCTCCTACCTATCCTGCCCAGCAGGCCTTCCCTCAACAAAGTTATGCACAACCCACAGCTGCGGCACCATTGACTCAGCCTCAGCAGCCC GCTGCTGCTCCACAACCTTACTACGGGACTTACTACTGA
AA sequence Show only first row Show all	>Potri.002G257100.2 pacid=42779256 polypeptide=Potri.002G257100.2.p locus=Potri.002G257100 ID=Potri.002G257100.2.v4.1 annot-version=v4.1 MGDSETVVTEPSAVMDYPAAGYASTGYADSGSVVVPGPGDFNVEGTGNFAASTVAAQGGHTGNTYGADSSSVVPEARVGMNSSAENAAAGGYDSAVNGNV GTEAGVAVSVENGNAGEVLGGAAAEQHFVDGSVPEMSAEEDHLWSIVKANSLDFDAWTALIDETEKVAGDRILKIRKVYDAFLVEFPLCYGYWKKYADHE ARLGFMDKVVEVYERAVLGVTYSVDIWLHYCMFAISTYGDPETVRRLFERGLAYAGTDYMSYPLWDKYIEYEEVHAEWGRVAMIYTRILEIPNRKLDDYF NRFKAFAASRPLSELKTAEEAAAVAPVLSEDRSQADEGEVHPDAAEQPSKPVNAGLTEAEELEKYIAIREEIYKKAKEFDNKIFDFENAIRRPYFHVRPL NVAELENWHNYLDDIEREDDFNKVVKLYERCVIACANYTEYWIRYVLCMEATGNMDLANNALARATQVFVKRQPEIHIFAARLKEQNGDVSGARAAYQVV HAEIAPGLLEAIIKHANMEHRLGNLEDAFSLYEQAIAIEKGKEHSQVLPALYAQYARFVYLASNNVEKAREILLEGLENAQYSKPLLEALIHFETFLPLP KRIDYLDSLVDKFILPSSDSVNAASAAEREELSCIFLEFLGIFGDAQSIKKAADRHAKFFLPHRSKSELKKRHAEDYLASDKAKMAKPYPDATSPAQSLM GAYASAQNQWTAGYGVQPQAWPPATQVQTQQWAPGYNQQAAYGAYSGYGGSYPNPQAPTSVAQGAAYGGYPPTYPAQQAFPQQSYAQPTAAAPLTQPQQP AAAPQPYYGTYY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04080		PRP39	Tetratricopeptide repeat (TPR)...		Potri.002G257100 [exp]	0	1
AT3G45100		SETH2	UDP-Glycosyltransferase superf...		Potri.016G130000 [exp]	1.73	0.8319
AT5G24970			Protein kinase superfamily pro...		Potri.018G014000 [exp]	2.23	0.8021
AT2G14170		ALDH6B2	aldehyde dehydrogenase 6B2 (....		Potri.001G283100 [exp]	6.32	0.7590	Pt-ALDH6.5
AT1G15215		SHH1, DTF1	SAWADEE homeodomain homolog 1,...		Potri.018G046200 [exp]	6.63	0.7551
AT1G51130			Nse4, component of Smc5/6 DNA ...		Potri.016G046802 [exp]	10.67	0.7886
AT5G55000		FIP2	potassium channel tetramerisat...		Potri.013G062500 [exp]	18.00	0.7192
AT4G36690		ATU2AF65A	U2 snRNP auxilliary factor, la...		Potri.007G028500 [exp]	18.13	0.7235
AT5G08110			nucleic acid binding;ATP-depen...		Potri.012G063500 [exp]	18.70	0.7714
AT3G10140		RECA3	RECA homolog 3 (.1)		Potri.016G057700 [exp]	21.54	0.7840
AT5G24670		TAD3, EMB2820	tRNA adenosine deaminase 3, EM...		Potri.013G094800 [exp]	21.72	0.8071

Compare expression of checked genes

Potri.002G257100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.