Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04520 243 / 2e-79 PDLP2 plasmodesmata-located protein 2 (.1) AT2G33330 238 / 1e-77 PDLP3 plasmodesmata-located protein 3 (.1) AT5G43980 236 / 1e-76 PDLP1, PDLP1A PLASMODESMATA-LOCATED PROTEIN 1A, plasmodesmata-located protein 1 (.1) AT5G37660 124 / 1e-33 PDLP7 plasmodesmata-located protein 7 (.1.2) AT3G04370 122 / 2e-32 PDLP4 plasmodesmata-located protein 4 (.1.2) AT2G01660 101 / 4e-25 PDLP6 plasmodesmata-located protein 6 (.1.2) AT1G70690 92 / 2e-21 HWI1, PDLP5 PLASMODESMATA-LOCATED PROTEIN 5, HOPW1-1-INDUCED GENE1, Receptor-like protein kinase-related family protein (.1) AT3G60720 90 / 1e-20 PDLP8 plasmodesmata-located protein 8 (.1) AT5G48540 78 / 1e-16 receptor-like protein kinase-related family protein (.1) AT4G23140 60 / 6e-10 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G171700 [exp] 258 / 2e-85 AT1G04520 349 / 3e-121 plasmodesmata-located protein 2 (.1) Potri.010G065800 [exp] 255 / 3e-84 AT1G04520 337 / 2e-116 plasmodesmata-located protein 2 (.1) Potri.013G048200 [exp] 191 / 4e-59 AT1G04520 214 / 3e-68 plasmodesmata-located protein 2 (.1) Potri.008G133500 [exp] 115 / 5e-30 AT2G01660 332 / 1e-114 plasmodesmata-located protein 6 (.1.2) Potri.004G086000 [exp] 109 / 5e-28 AT5G37660 301 / 1e-102 plasmodesmata-located protein 7 (.1.2) Potri.010G108100 [exp] 108 / 9e-28 AT2G01660 265 / 2e-88 plasmodesmata-located protein 6 (.1.2) Potri.017G130800 [exp] 107 / 6e-27 AT5G37660 314 / 1e-107 plasmodesmata-located protein 7 (.1.2) Potri.014G067000 [exp] 92 / 1e-21 AT3G60720 306 / 8e-105 plasmodesmata-located protein 8 (.1) Potri.002G249600 [exp] 81 / 7e-18 AT5G48540 256 / 7e-86 receptor-like protein kinase-related family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001052 [exp] 253 / 4e-83 AT5G43980 234 / 1e-75 PLASMODESMATA-LOCATED PROTEIN 1A, plasmodesmata-located protein 1 (.1) Lus10014475 [exp] 236 / 1e-76 AT1G04520 391 / 1e-137 plasmodesmata-located protein 2 (.1) Lus10023726 [exp] 234 / 1e-75 AT1G04520 389 / 2e-136 plasmodesmata-located protein 2 (.1) Lus10001418 [exp] 115 / 6e-31 AT5G43980 122 / 9e-34 PLASMODESMATA-LOCATED PROTEIN 1A, plasmodesmata-located protein 1 (.1) Lus10020814 [exp] 107 / 5e-27 AT5G37660 311 / 2e-106 plasmodesmata-located protein 7 (.1.2) Lus10016710 [exp] 93 / 2e-21 AT2G01660 318 / 1e-108 plasmodesmata-located protein 6 (.1.2) Lus10027953 [exp] 86 / 7e-19 AT3G04370 86 / 7e-19 plasmodesmata-located protein 4 (.1.2) Lus10010362 [exp] 82 / 1e-17 AT3G60720 259 / 7e-85 plasmodesmata-located protein 8 (.1) Lus10038227 [exp] 77 / 5e-16 AT5G48540 261 / 1e-87 receptor-like protein kinase-related family protein (.1) Lus10025875 [exp] 70 / 2e-13 AT5G48540 261 / 2e-87 receptor-like protein kinase-related family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [poplar] [flax] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Potri.002G257300.1 pacid=42777934 polypeptide=Potri.002G257300.1.p locus=Potri.002G257300 ID=Potri.002G257300.1.v4.1 annot-version=v4.1 ATGGGTTTATTCAGAAAACCCTCTTTTCTCCTGTCTAATACCATGTTTGTGATTGCAGTTTTTGGATTTTTAGTGACAGTCGTAGGTGCTGCAGATCACA CAACTCTGGTTTTCAAGGGGTGTGCTGACCAAAAATTTCAAGACCCATCGGGGATCTATGCTCAAAACCTCAGGAACCTCTTGAATTCTCTGGTTTCACA ATCTTCACAGAAAATTTATTTCACAGCAACATCTGGTGATGGTCAAAATGTCATTACGGGTCTGTACCAATGCAGAGGGGACCTCTCTAACAATCCCTGC CATGCTTGTGTTAGTAAAGTCCCGGACTTGATCGACAAGCTTTGTGGCAAAGTGGTAGCTGCCAGGGTCCAACTCAGTGGGTGTTACCTGAAGTACGAGG TTGCTGGTTTTAAGCAGGTATCAGGAACTGAGTTGCTGTACAAGGTTTGTGGGTCAACTAAGGCGAGTGGAACCGGGTTCGAGGATAGGAGAGATGCGGC TTTTGAAACCATGGTGGATGGTGTTAAAAATGGTAGCAATGGGCTGTTTTACACTGGAGAGTACCAGTCAGTGTTTGTTCTGGGCCAGTGTGAAGGTGAT TTGTCAAGCGGGGATTGTGGGGATTGTGTGAATACTGCTGTACAGAGTGTGAAGAGTGAGTGTGGTGACTCAATTTCTGGGCAACTCTACCTCAACAAGT GCTATCTTAGCTACAGCTATTACCCCAATGGAGTGCCTAGCATTTCTTCAACTTCAGATGTAGGGACCAGGCAGCGCACACAGAGGACAGTGGCCATTGC AGTTGGAGGAGTGGCAGCTTTGGGGTTTGGAGTTGTTTGTTTGTTGTTTGTCAGGTCTATCTTCAAGAAAAGACTTGGTAAGCATGAAGGTTGGCATTGA
AA sequence Show only first row Show all	>Potri.002G257300.1 pacid=42777934 polypeptide=Potri.002G257300.1.p locus=Potri.002G257300 ID=Potri.002G257300.1.v4.1 annot-version=v4.1 MGLFRKPSFLLSNTMFVIAVFGFLVTVVGAADHTTLVFKGCADQKFQDPSGIYAQNLRNLLNSLVSQSSQKIYFTATSGDGQNVITGLYQCRGDLSNNPC HACVSKVPDLIDKLCGKVVAARVQLSGCYLKYEVAGFKQVSGTELLYKVCGSTKASGTGFEDRRDAAFETMVDGVKNGSNGLFYTGEYQSVFVLGQCEGD LSSGDCGDCVNTAVQSVKSECGDSISGQLYLNKCYLSYSYYPNGVPSISSTSDVGTRQRTQRTVAIAVGGVAALGFGVVCLLFVRSIFKKRLGKHEGWH

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04520		PDLP2	plasmodesmata-located protein ...		Potri.002G257300 [exp]	0	1
AT5G53540			P-loop containing nucleoside t...		Potri.012G013580 [exp]	1.41	0.8768
AT5G53540			P-loop containing nucleoside t...		Potri.012G015670 [exp]	2.44	0.8593
AT5G46460			Pentatricopeptide repeat (PPR)...		Potri.001G267100 [exp]	3.46	0.8347
AT1G32583			unknown protein		Potri.015G101000 [exp]	4.00	0.8304
AT2G02250		ATPP2-B2	phloem protein 2-B2 (.1)		Potri.018G016100 [exp]	6.48	0.8058
AT2G35550	BBR_BPC	BPC7, BBR/BPC7,...	basic pentacysteine 7 (.1.2.3....		Potri.001G133900 [exp]	7.07	0.8223
AT4G14103			F-box/RNI-like superfamily pro...		Potri.001G395000 [exp]	7.41	0.8163
AT4G30520		SARK	SENESCENCE-ASSOCIATED RECEPTOR...		Potri.018G101300 [exp]	10.90	0.8306
AT3G55140			Pectin lyase-like superfamily ...		Potri.016G080600 [exp]	11.26	0.7256
AT4G06536			SPla/RYanodine receptor (SPRY)...		Potri.002G123800 [exp]	11.40	0.7830

Compare expression of checked genes

Potri.002G257300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.