Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43990 523 / 2e-175 SDG18, SUVR2 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) AT1G04050 457 / 7e-150 SDG13, SUVR1 SET DOMAIN PROTEIN 13, homolog of SU(var)3-9 1 (.1) AT3G04380 397 / 5e-130 SDG31, SUVR4 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) AT2G23740 119 / 3e-27 C2H2ZnF AtCZS nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) AT1G73100 114 / 8e-26 SDG19, SUVH3 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) AT3G03750 101 / 6e-23 SUVR3, SDG20 SET domain protein 20 (.1.2) AT2G35160 98 / 1e-20 SGD9, SUVH5 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) AT5G04940 96 / 3e-20 SUVH1 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) AT2G22740 91 / 1e-18 SDG23, SUVH6 SET DOMAIN PROTEIN 23, SU(VAR)3-9 homolog 6 (.1), SU(VAR)3-9 homolog 6 (.2) AT5G13960 88 / 9e-18 SDG33, KYP, SUVH4 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G192500 [exp] 1229 / 0 AT5G43990 531 / 3e-178 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Potri.013G048100 [exp] 433 / 2e-141 AT3G04380 471 / 5e-161 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Potri.009G138600 [exp] 411 / 8e-134 AT3G04380 427 / 2e-144 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Potri.007G033000 [exp] 118 / 9e-27 AT2G23740 1436 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Potri.005G129800 [exp] 115 / 4e-26 AT2G23740 1468 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Potri.013G064600 [exp] 99 / 8e-22 AT3G03750 258 / 1e-83 SET domain protein 20 (.1.2) Potri.003G188700 [exp] 97 / 2e-20 AT1G73100 806 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.001G036800 [exp] 97 / 2e-20 AT1G73100 796 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.002G237950 [exp] 96 / 3e-20 AT5G13960 709 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024946 [exp] 630 / 0 AT5G43990 488 / 7e-163 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Lus10022879 [exp] 626 / 0 AT5G43990 455 / 2e-149 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Lus10012513 [exp] 373 / 3e-121 AT3G04380 419 / 2e-143 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Lus10005476 [exp] 367 / 2e-118 AT3G04380 503 / 3e-176 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Lus10022657 [exp] 356 / 8e-116 AT3G04380 412 / 2e-142 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Lus10027956 [exp] 206 / 4e-62 AT3G04380 226 / 3e-73 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Lus10008198 [exp] 153 / 2e-42 AT3G04380 217 / 8e-69 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Lus10024947 [exp] 142 / 1e-36 AT5G43990 100 / 4e-23 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Lus10022878 [exp] 112 / 9e-27 AT5G43990 110 / 2e-26 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Lus10022483 [exp] 111 / 1e-24 AT2G23740 1070 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00856 [poplar] [flax] SET SET domain PF05033 [poplar] [flax] Pre-SET Pre-SET motif CL0214 [poplar] [flax] UBA PF10440 [poplar] [flax] WIYLD Ubiquitin-binding WIYLD domain
Representative CDS sequence Show only first row Show all	>Potri.002G257400.6 pacid=42780123 polypeptide=Potri.002G257400.6.p locus=Potri.002G257400 ID=Potri.002G257400.6.v4.1 annot-version=v4.1 ATGGCTCCTAACCCGAGAGTGGTGAACGCGTTCAGGGCGATGAGAGCGATTGGAATAACAGAGAAGCAAGTTAAGCCTGTATTGAAGAAGATGCTGAAGC TCTATGACAAAAATTGGGAGCTTATAGAGGAGGAAAATTATAGAGCTCTTGCGGATGCTATCTTTGAAGAGGAGGAGGCTAAGGTTCCGGAAGAGAAGGA TGAGGCTGCTGAGGGGACTTTGGAGGAAGAAACTTTGGCATCTAGTGAACCTGAGTTGCCATTAAAGCGGCTGCGAAGAGGGCAAGATGGGCAAGTTTCT GGATCTCCTAGTGACATTGAGGCTGGATTGGGTGGAAGCCCTTTTAAGAAGAGTAAAGTTGAGGGGAAGGGACTGGCTGGTGAAACATCGGAGCAGCAGT CATCGGACATGAGAATTTCACAACCGAAGCCAATTGCAATTTGGAGTCCTAATAGAAACACAAGTTCACAAACTGTTTCTCCTCGTCGTTTGGCAGTGCT GGAACACTCTAAGCAGCGTTCCAACGAGGGAAAAGATCCTTTATTATCCGAGGCTACTGCACAACAGAAAAGACCTAATTTAAAAGGATCGTCACAAGCA GTTCACCTTAAAGACCCCATAGTTCAGCAAGGCATTGTTCTTTCACCCAAACAAAAAATGCCTCTTATCAGGCCTAAAGATGAGCCATTTACTGATGATG TGCCTTTTGATAACGCACCACAACCTATCGCAATAATCCGACCAGATTGTGCAAGTAAAGAACAATATTTTAATCAGAGAGTTTCTTCACTCAAACAGCA TCGACAAGAACGTCCAGCATCCCAAGTATTAGCTGGTGAAGGTAGGGAAGAGAACCTTCCAGTCCCATCAAGTCTGACAAGAGACAGCCGTGAACTTGCA ACCATTCCAGAGGAAGCTCAGGCTAACTTAGAGATCGCCACCTCAGCAATGGGAGAGGTGAAGATTTCTCTGAGCTGCAACTCTTTGCTTGGAAGACCAA ATTTTCATATGCCTAGCCAAGATGAACTTCTGAAATCAATGCAGGAGAAATGTCTCCGATCTTACAAAATCATCGATCCAAACTTTTCTGTCATGCAAAT ACTGAAAGATATGTGTGAATGCTTCTTGGACTTGGCAACTGATTCCTCTCATGAATCGCAGGAAAGGATATTGAATGTAACTCCAGCTCTTGATCTATTG AAGAAATCTGCTGGTGTTGGTGCCATTAAACAAAATGACCGTATACAAGCCTATTTTGCAAACAGATCAGTTGATGCCTGTTGCTTTGATGGGATGGCCG CTCTTCAAATTCCAAGACCACTACAACTTTCGAATGGCTTGGAGGTCATGCAGTCAAGTGAAGAGGTTATTGTGAATGGGTGTTCTGGAAGTGGCAAAGA AAAGGAATTTGAAGATGCTGAGTATGGTAGTTTGATTGTGGTTCCACAGCATCAATTGACTGCTGATGAGTTTAGGTTCCTTAATTACCATTCTGACATT ACCAAGGGAGAAGAAATGTTTGAGATTCCATGGTCGAATGAAGTAAACAGCGAGTTTCCCCCAGTTTTTAACTACATACCCCGAAATTTGATTTTTCAAA ATGCATATGTCAACTTCTCTCTCTCACAAATCAGGGCTGAAAATTGTTGCTCGGCTTGTATTGGTAATTGTTTGTCGTCATCTACGCCTTGTGTTTGCTC CAGCGACAGTGAGCATGGTTTTGCATATACTTTAGAAGGCCTTGTCAAAGAGGACTTCTTAGAAGATTGTATCTCTCTAACTCGGAATCCTCAAAGACAA TTTCTTTTTTACTGTAGAGATTGCCCACTGGAAAGATCAAAAAATGATGAGATGTTGGAACCATGCAAGGGTCACTTGAAGAGGAAATATATTAAAGAAT GTTGGAGCAAATGTGGCTGCCACAAACAGTGTGGAAATAGAGTCGTGCAGCGAGGTATAATGTGCAAGTTGCAGGTTTTCTTTACTCCTGAAGGAAAGGG GTGGGGTCTCAGAACTCTAGAATTGCTACCAAAAGGTACATTTGTATGTGAGTATGTAGGGGAGATCCTAACCAACAAGGAGTTCTACGAGAGGAAGATG CAAAGGGCAACTAGCAACAAAACTGAAAAGCATGCCTATCCAGCTGTACTTGATGCAGATTGGTGCTTGAAAGGAGTTGTAAATGATGAAGAAGCTCTGT GCTTGGATGCGACATTTTATGGAAATGTTGCTAGGTTTATCAACCACAGATGTCTCGATGCTAACATGATCGAGATCCCGGTGAAGATTGAGACCCCTGA TCATCATTATTATCATCTTGCTTTCTTCACGACTAGAGAAGTGAATGCTTCGGAAGAGTTAACCTGGGATTATGGCATTGATTTTGATGATACTGATCAA CCTGTGGAGTTATTCCATTGCCGATGTGGCAGCAAGTTCTGCAGGAACATGAAACGTTCAAGTAGATCTAATTCAGCAGCAAGATGA
AA sequence Show only first row Show all	>Potri.002G257400.6 pacid=42780123 polypeptide=Potri.002G257400.6.p locus=Potri.002G257400 ID=Potri.002G257400.6.v4.1 annot-version=v4.1 MAPNPRVVNAFRAMRAIGITEKQVKPVLKKMLKLYDKNWELIEEENYRALADAIFEEEEAKVPEEKDEAAEGTLEEETLASSEPELPLKRLRRGQDGQVS GSPSDIEAGLGGSPFKKSKVEGKGLAGETSEQQSSDMRISQPKPIAIWSPNRNTSSQTVSPRRLAVLEHSKQRSNEGKDPLLSEATAQQKRPNLKGSSQA VHLKDPIVQQGIVLSPKQKMPLIRPKDEPFTDDVPFDNAPQPIAIIRPDCASKEQYFNQRVSSLKQHRQERPASQVLAGEGREENLPVPSSLTRDSRELA TIPEEAQANLEIATSAMGEVKISLSCNSLLGRPNFHMPSQDELLKSMQEKCLRSYKIIDPNFSVMQILKDMCECFLDLATDSSHESQERILNVTPALDLL KKSAGVGAIKQNDRIQAYFANRSVDACCFDGMAALQIPRPLQLSNGLEVMQSSEEVIVNGCSGSGKEKEFEDAEYGSLIVVPQHQLTADEFRFLNYHSDI TKGEEMFEIPWSNEVNSEFPPVFNYIPRNLIFQNAYVNFSLSQIRAENCCSACIGNCLSSSTPCVCSSDSEHGFAYTLEGLVKEDFLEDCISLTRNPQRQ FLFYCRDCPLERSKNDEMLEPCKGHLKRKYIKECWSKCGCHKQCGNRVVQRGIMCKLQVFFTPEGKGWGLRTLELLPKGTFVCEYVGEILTNKEFYERKM QRATSNKTEKHAYPAVLDADWCLKGVVNDEEALCLDATFYGNVARFINHRCLDANMIEIPVKIETPDHHYYHLAFFTTREVNASEELTWDYGIDFDDTDQ PVELFHCRCGSKFCRNMKRSSRSNSAAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G43990		SDG18, SUVR2	SET DOMAIN PROTEIN 18, SET-dom...		Potri.002G257400 [exp]	0	1
AT2G43490			Ypt/Rab-GAP domain of gyp1p su...		Potri.017G023200 [exp]	3.46	0.8771
AT4G02440		EID1	EMPFINDLICHER IM DUNKELROTEN L...		Potri.002G205150 [exp]	5.29	0.8525
AT1G20950			Phosphofructokinase family pro...		Potri.010G106950 [exp]	6.40	0.8798
AT3G54230		SUA	suppressor of abi3-5 (.1.2)		Potri.017G138500 [exp]	8.12	0.8384
AT1G19010			unknown protein		Potri.017G074300 [exp]	8.12	0.8632
AT5G42870		ATPAH2	phosphatidic acid phosphohydro...		Potri.014G031000 [exp]	9.59	0.7991
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Potri.016G049900 [exp]	12.96	0.8740
AT2G20210			RNI-like superfamily protein (...		Potri.014G194800 [exp]	12.96	0.8247
AT5G36930			Disease resistance protein (TI...		Potri.002G056100 [exp]	13.22	0.8049
AT1G15910		FDM1	factor of DNA methylation 1, X...		Potri.003G181000 [exp]	15.58	0.7152

Compare expression of checked genes

Potri.002G257400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.