Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G000801 [exp] 37 / 0.0002 ND / Potri.006G259300 [exp] 38 / 0.0003 AT5G25240 47 / 2e-07 unknown protein Potri.001G180500 [exp] 37 / 0.0007 AT2G25735 40 / 3e-05 unknown protein Potri.014G192100 [exp] 0 / 1 AT5G44005 49 / 4e-09 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003608 [exp] 48 / 3e-08 AT5G44005 55 / 4e-11 unknown protein Lus10008224 [exp] 47 / 7e-08 AT5G44005 57 / 6e-12 unknown protein Lus10003610 [exp] 46 / 1e-07 AT5G44005 59 / 1e-12 unknown protein Lus10008220 [exp] 46 / 2e-07 AT5G44005 55 / 4e-11 unknown protein Lus10008223 [exp] 45 / 3e-07 ND 41 / 6e-06 Lus10024940 [exp] 45 / 3e-07 ND 42 / 2e-06 Lus10003609 [exp] 43 / 3e-06 AT5G44005 51 / 9e-10 unknown protein Lus10008222 [exp] 44 / 4e-06 AT4G12010 327 / 4e-96 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10003607 [exp] 39 / 8e-05 ND 48 / 2e-08 Lus10008219 [exp] 39 / 0.0003 AT5G44005 56 / 2e-10 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G257600.1 pacid=42779959 polypeptide=Potri.002G257602.1.p locus=Potri.002G257600 ID=Potri.002G257600.1.v4.1 annot-version=v4.1 ATGGACGAAGGTGATTGTATTGTGTCCCCCTCTCACTCTTTAGGTATGGACGGTGTGGACTTTTATGCTAGAGAAAACCTTATCTCACTTTTTGGTCACA GATTCTTCCCGGGAAGGTGCAGCTGGTACAGTACTGATGGTGGAGGGAAGAATGAAGAGAATCCGGTTCTTGAGGTGGGGGAGCAGAATCTCAAGCACTG GCTAGCTTCGAGGTTCAGGGCTCAATGGAAGCAAGCTTTCGGGTGGAAAAGGAGCAGTGCACAGTGCAGCTATGATCCTTACAGCTACTCTTTGAACTTT GATGATGGTCTCTCGATCCCATGA
AA sequence Show only first row Show all	>Potri.002G257600.1 pacid=42779959 polypeptide=Potri.002G257602.1.p locus=Potri.002G257600 ID=Potri.002G257600.1.v4.1 annot-version=v4.1 MDEGDCIVSPSHSLGMDGVDFYARENLISLFGHRFFPGRCSWYSTDGGGKNEENPVLEVGEQNLKHWLASRFRAQWKQAFGWKRSSAQCSYDPYSYSLNF DDGLSIP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.002G257600 [exp]	0	1
AT2G19170		SLP3	subtilisin-like serine proteas...		Potri.006G076200 [exp]	2.44	0.9011	SLP3.1
AT5G51560			Leucine-rich repeat protein ki...		Potri.012G128700 [exp]	12.36	0.8790
AT5G15230		GASA4	GAST1 protein homolog 4 (.1.2)		Potri.017G083000 [exp]	15.00	0.8686	GASA4.2
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Potri.017G081100 [exp]	15.90	0.8352
AT2G21050		LAX2	like AUXIN RESISTANT 2 (.1)		Potri.009G132100 [exp]	19.05	0.8503	PtrAUX6,Pt-LAX5.1
AT1G47670			Transmembrane amino acid trans...		Potri.014G036500 [exp]	19.13	0.8683
AT3G55770	LIM	WLIM2b	WLIM2b, GATA type zinc finger ...		Potri.010G193800 [exp]	21.44	0.8708
					Potri.008G101675 [exp]	24.95	0.7921
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Potri.011G061300 [exp]	29.73	0.8319	Pt-RAB11.12
AT3G10260			Reticulon family protein (.1.2...		Potri.005G206800 [exp]	30.49	0.7652

Compare expression of checked genes

Potri.002G257600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.