Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04040 317 / 1e-109 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT5G44020 297 / 6e-102 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT4G25150 213 / 6e-69 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT5G51260 208 / 7e-67 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT4G29260 203 / 3e-65 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT2G38600 200 / 7e-64 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT4G29270 199 / 2e-63 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT5G24770 164 / 8e-50 ATVSP2, VSP2 vegetative storage protein 2 (.1.2) AT5G24780 162 / 4e-49 ATVSP1, ATVSP, VSP1 vegetative storage protein 1 (.1.2) AT2G39920 77 / 1e-16 HAD superfamily, subfamily IIIB acid phosphatase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G066500 [exp] 356 / 2e-125 AT1G04040 285 / 5e-97 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.004G232900 [exp] 211 / 4e-68 AT5G51260 346 / 3e-121 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.001G191000 [exp] 204 / 2e-65 AT4G25150 259 / 8e-87 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.006G152900 [exp] 197 / 5e-63 AT4G29260 292 / 3e-100 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.016G139700 [exp] 177 / 4e-55 AT2G38600 347 / 1e-121 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.006G110900 [exp] 172 / 3e-53 AT2G38600 322 / 2e-112 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.010G193500 [exp] 97 / 9e-24 AT2G39920 195 / 1e-60 HAD superfamily, subfamily IIIB acid phosphatase (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023731 [exp] 311 / 2e-107 AT1G04040 273 / 3e-92 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10011774 [exp] 310 / 4e-107 AT1G04040 272 / 8e-92 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10007939 [exp] 212 / 2e-68 AT4G25150 300 / 5e-103 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10013478 [exp] 212 / 2e-68 AT4G25150 301 / 1e-103 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10043042 [exp] 189 / 2e-59 AT4G29270 251 / 7e-84 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10011140 [exp] 183 / 3e-57 AT4G29270 251 / 8e-84 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10014968 [exp] 165 / 6e-50 AT4G29260 231 / 1e-75 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10017060 [exp] 131 / 6e-38 AT2G38600 216 / 2e-71 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10006849 [exp] 91 / 1e-22 AT4G25150 121 / 9e-35 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10028259 [exp] 90 / 6e-21 AT2G39920 194 / 2e-60 HAD superfamily, subfamily IIIB acid phosphatase (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [poplar] [flax] HAD PF03767 [poplar] [flax] Acid_phosphat_B HAD superfamily, subfamily IIIB (Acid phosphatase)
Representative CDS sequence Show only first row Show all	>Potri.002G257700.1 pacid=42778647 polypeptide=Potri.002G257700.1.p locus=Potri.002G257700 ID=Potri.002G257700.1.v4.1 annot-version=v4.1 ATGGCAAGAAATTTGGTGTTCATACTAGCTCTGACAAGCCTCTACATTGGCTTAGCAGCCGCAGACTGGAATATCTTGAACAAAAAATCGAAAAATAGGG ATGCCTCTAGCTTGAAGAATTATTGTGAGAGTTGGAGGATCAATGTTGAGCTAAACAACATCAAGGATTTTGAGGTGGTGCCACAAGAATGTGTAGATCA CGTCAAACATTACATGACCTCGTCTCAGTACACAGCAGACTCCGAGAGGGCGATCGAGGAAGTCAGGCTCTACCTCAGCAGTTGCTGTACTTTGGAAGGT GATGGCAAAGATGCTTGGATTTTTGATGTTGATGACACTCTCTTGTCCACCATACCTTACTACAAGAAACATGGTTTTGGGGGAGAGAAGCTCAATGCAA CCTTATTCGAATCATGGATGAAGCAAGGCAAAGCGCCTGCTCTAGACCATACACTCAAGTTCTTCCATGAGATCAAAGGCAAAGGGGTCAAAATCTTTCT TATTTCCTCCAGAAGTGAAACCCTTAGATCAGCCACTGTCGAGAATCTTATCAATGCTGGATACCATGGATGGTCCAGCCTCATATTGAGGGGTCTTGAA GACGACTTCATGAAAGTGCAGCAATACAAATCCGAGGCAAGGAGAGCATTGACAAAAGAAGGATACCGCATATGGGGAATCATAGGAGATCAGTGGAGCA GTGTGGAGGGACTCCCTGGTGCCAAAAGAACATTCAAGTTGCCAAATTCCATGTACTACCTTTCCTAA
AA sequence Show only first row Show all	>Potri.002G257700.1 pacid=42778647 polypeptide=Potri.002G257700.1.p locus=Potri.002G257700 ID=Potri.002G257700.1.v4.1 annot-version=v4.1 MARNLVFILALTSLYIGLAAADWNILNKKSKNRDASSLKNYCESWRINVELNNIKDFEVVPQECVDHVKHYMTSSQYTADSERAIEEVRLYLSSCCTLEG DGKDAWIFDVDDTLLSTIPYYKKHGFGGEKLNATLFESWMKQGKAPALDHTLKFFHEIKGKGVKIFLISSRSETLRSATVENLINAGYHGWSSLILRGLE DDFMKVQQYKSEARRALTKEGYRIWGIIGDQWSSVEGLPGAKRTFKLPNSMYYLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04040			HAD superfamily, subfamily III...		Potri.002G257700 [exp]	0	1
AT5G66920		SKS17	SKU5 similar 17 (.1)		Potri.007G038300 [exp]	1.00	0.9689
AT3G63470		SCPL40	serine carboxypeptidase-like 4...		Potri.009G055900 [exp]	2.00	0.9551
AT3G44610			Protein kinase superfamily pro...		Potri.010G236200 [exp]	2.00	0.9655
AT3G55770	LIM	WLIM2b	WLIM2b, GATA type zinc finger ...		Potri.010G193800 [exp]	2.23	0.9545
AT4G12420		SKU5	Cupredoxin superfamily protein...		Potri.001G120300 [exp]	2.44	0.9560	SKU5.2
AT1G11680		EMB1738, CYP51A...	embryo defective 1738, CYTOCHR...		Potri.001G068400 [exp]	2.64	0.9475	CYP51.2
AT5G06940			Leucine-rich repeat receptor-l...		Potri.006G056600 [exp]	4.89	0.9463
AT5G57330			Galactose mutarotase-like supe...		Potri.001G037700 [exp]	5.19	0.9444
AT5G42560			Abscisic acid-responsive (TB2/...		Potri.005G237900 [exp]	5.47	0.9535
AT5G51560			Leucine-rich repeat protein ki...		Potri.012G128700 [exp]	7.34	0.9334

Compare expression of checked genes

Potri.002G257700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.