Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44030 1527 / 0 IRX5, NWS2, CESA4 IRREGULAR XYLEM 5, cellulose synthase A4 (.1) AT5G17420 1306 / 0 ATCESA7, MUR10, IRX3 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) AT5G05170 1300 / 0 IXR1, CEV1, ATH-B, ATCESA3, CESA3 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) AT5G09870 1284 / 0 CESA5 cellulose synthase 5 (.1) AT4G32410 1276 / 0 AtCESA1, RSW1, CESA1 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) AT4G18780 1222 / 0 LEW2, IRX1, ATCESA8, CESA8 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) AT5G64740 1204 / 0 PRC1, IXR2, E112, CESA6 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) AT2G21770 1188 / 0 CESA09, CESA9 cellulose synthase A9 (.1) AT1G32180 723 / 0 ATCSLD6 CELLULOSE SYNTHASE LIKE D6, cellulose synthase-like D6 (.1) AT2G25540 715 / 0 CESA10 cellulose synthase 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G019800 [exp] 1325 / 0 AT5G64740 1512 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Potri.006G181900 [exp] 1311 / 0 AT5G17420 1730 / 0.0 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) Potri.018G103900 [exp] 1298 / 0 AT5G17420 1730 / 0.0 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) Potri.005G027600 [exp] 1253 / 0 AT5G64740 1506 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Potri.011G069600 [exp] 1230 / 0 AT4G18780 1658 / 0.0 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) Potri.004G059600 [exp] 1228 / 0 AT4G18780 1655 / 0.0 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) Potri.006G251900 [exp] 1212 / 0 AT4G32410 1899 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Potri.018G029400 [exp] 1207 / 0 AT4G32410 1898 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Potri.006G052600 [exp] 761 / 0 AT5G05170 1749 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012198 [exp] 1316 / 0 AT5G05170 1774 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10007538 [exp] 1313 / 0 AT5G05170 1772 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10007296 [exp] 1224 / 0 AT4G18780 1671 / 0.0 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) Lus10029245 [exp] 1223 / 0 AT4G18780 1659 / 0.0 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) Lus10039607 [exp] 1218 / 0 AT5G05170 1820 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10018902 [exp] 1214 / 0 AT4G32410 1915 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Lus10028597 [exp] 1214 / 0 AT4G32410 1922 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Lus10002939 [exp] 1196 / 0 AT5G64740 1870 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10041063 [exp] 1190 / 0 AT5G64740 1868 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10003526 [exp] 1189 / 0 AT5G64740 1863 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF13632 [poplar] [flax] Glyco_trans_2_3 Glycosyl transferase family group 2 CL0229 [poplar] [flax] RING PF14569 [poplar] [flax] zf-UDP Zinc-binding RING-finger
Representative CDS sequence Show only first row Show all	>Potri.002G257900.1 pacid=42778028 polypeptide=Potri.002G257900.1.p locus=Potri.002G257900 ID=Potri.002G257900.1.v4.1 annot-version=v4.1 ATGGCTGGCCTTGTCACGGGCAGTTCACAGACCTTGCATGCCAAAGATGAGCTGAGGCCTCCAACTCGCCAGTCTGCAACGTTGAAAAAATGTAGAGTTT GTGGGGATGAGATTGGAGTTAAGGAAGATGGAGAGGTGTTTGTTGCTTGTCATGTGTGTGGCTTTCCTGTTTGTAGGCCTTGTTATGAGTATGAGAGGAG TGAAGGCAACCAGTCCTGTCCTCAGTGCAACACTCGATATAAGCGTCACAAAGGTTGTCCTAGAGTTCCTGGAGATAATGACGATGAGGATGCCAATTTT GATGATTTTGAAGACGAATTTCAGATTAAGCATCATGATCATGACGAATCCAATCAGAAAAATGTTTTTAGTCACACGGAAATTGAGCACTACAATGAAC AGGAAATGCAACCCATTCGTCCGGCCTTTTCGTCAGCAGGAAGTGTTGCTGGTAAGGATCTTGAAGGCGAGAAAGAGGGTTATAGCAATGCAGAATGGCA AGAGAGGGTGGAGAAATGGAAAGTTAGGCAAGAAAAGAGAGGTTTGGTGAGCAAAGATGATGGAGGAAATGATCAAGGAGAAGAAGATGAGTACCTCATG GCTGAAGCCAGGCAACCACTATGGAGAAAAATCCCAATTCCCTCAAGCAGAATCAACCCGTATCGAATTGTCATTGTCCTTCGACTTATCATTCTTTGCT TCTTTTTCCGTTTTCGGATCTTAACTCCAGCATACGATGCTTATGCATTGTGGCTTATCTCTGTAATATGTGAGGTATGGTTTGGCCTCTCCTGGATCCT TGACCAGTTCCCAAAATGGAACCCCATTGAACGTGAAACTTATCTTGATCGCCTATCCATGAGGTTTGAGCGTGAGGGTGAGCCTAATCGTCTGGGCCCA GTTGATGTGTTTGTGAGTACTGTGGATCCTCTCAAGGAACCACCAATCATAACTGCAAATACAGTCCTTTCAATCCTATCCGTTGATTATCCTGTCGACA AGGTCAGTTGTTATGTATCAGATGATGGTGCATCCATGCTCCTTTTCGACTCCCTAGCAGAAACTGCTGAGTTTGCTAGAAGATGGGTTCCATTTTGCAA GAAGCATAACATTGAGCCAAGGGCTCCTGAGTTCTACTTCACTCAGAAGATTGACTACTTGAAAGACAAAGTGCATCCCAACTTTGTGAAGGAGCGCAGA GCTATGAAAAGAGAATATGAAGAATTCAAAGTAAGGATCAACGCATTGGTGTCAAAGGCCCAAAAGAAACCAGAAGAAGGATGGGTGATGCAGGATGGTA CCCCATGGCCTGGAAACATCACACGTGATCATCCTGGAATGATTCAGGTATATCTAGGAAGTGAGGGTGCGCTCGACGTGGAAGGCAAGGAGCTTCCGAG GCTTGTGTATGTTTCCCGTGAGAAACGACCTGGATATAACCACCACAAGAAAGCAGGTGCCATGAATGCTCTGATTCGAGTCTCAGCAGTGCTCACCAAT GCACCTTTTATGTTGAATTTGGATTGTGACCATTACATCAATAACAGCAAGGCTGTAAGAGAAGCCATGTGCTTTTTGATGGATCCCCAACTTGGGAAGA AGCTCTGCTATGTCCAGTTTCCGCAGAGGTTTGATGGTATTGATCGCCATGATAGATATGCTAATCGCAATGTTGTGTTCTTTGATATAAACATGAAAGG TCTAGATGGGGTTCAAGGGCCAGTATATGTTGGTACTGGATGTGTCTTCAACAGGCAGTCCTTGTATGGCTATGATCCTCCAGTGTCTGAGAAGAGACCC AAGATGACATGCGATTGCTGGCCTTCATGGTGTTGCTGTTGCTGTGGTGGTTCAAGGAAAAAGTCTAAGAAGAAAGGGCAAAGAAGTCTTCTTGGAGGAC TATACCCCATGAAAAAGAAAATGATGGGGAAGAAGTACACAAGGAAAGCATCTGCACCAGTCTTTGATCTTGAAGAGATTGAAGAAGGGCTTGAAGGCTA CGAAGAGTTGGAGAAATCATCACTCATGTCACAAAAAAGTTTCGAGAAACGGTTTGGGCAATCACCGGTATTTATTGCCTCTACCCTCATGGAAAATGGT GGCCTGCCTGAAGGAACTAACTCTCAATCACACATTAAGGAAGCCATTCATGTTATAAGTTGCGGGTATGAAGAAAAAACCGAATGGGGTAAAGAGGTTG GATGGATTTATGGTTCTGTTACAGAAGATATCCTGACAGGCTTCAAGATGCATTGTAGAGGGTGGAGGTCTGTCTACTGTTCTCCCCAGAGACCAGCTTT TAAGGGATCTGCTCCCATTAATCTATCAGATAGGTTGCACCAAGTTCTGCGATGGGCACTAGGCTCTATTGAGATTTTCCTTAGTCATCACTGTCCTCTA TGGTATGGCTATGGAGGAAAGTTGAAGTTGCTGGAGAGGCTTGCTTACATCAACACCATCGTTTACCCTTTCACCTCCATTCCCTTACTTGCCTACTGTA CTATTCCAGCAGTCTGCCTTCTGACAGGAAAATTTATCATCCCTACTCTGAACAACCTTGCTAGCATATGGTTCCTAGCCCTTTTCATCTCAATCATAGC AACATCTGTGTTAGAACTTCGATGGAGTGGAGTCAGCATCCAGGACTTGTGGCGTAATGAGCAATTTTGGGTTATCGGCGGTGTCTCAGCTCATCTTTTT GCTGTCTTCCAAGGCCTCCTCAAGGTCCTTGGAGGAGTAGACACTAACTTCACTGTTACATCAAAATCAGCAGACGATGCCGAGTTTGGAGAGCTGTACC TCTTCAAATGGACCACCCTCCTCATCCCACCAACCACTCTAATCATCTTGAATATGGTTGGAGTTGTAGCAGGAGTATCCGATGCAATAAACAACGGATA TGGATCATGGGGTCCTTTATTTGGGAAGCTATTTTTCGCTTTCTGGGTCATTGTCCATCTCTATCCCTTCCTCAAAGGTCTGATGGGAAGGCAAAACAGG ACTCCTACAATTGTTGTCCTCTGGTCTATACTTCTTGCATCTATTTTCTCATTGATTTGGGTTAGAATTGATCCCTTCTTGCCCAAGCAAACTGGCCCAA TTCTCAAACAATGTGGGGTGGAGTGCTAG
AA sequence Show only first row Show all	>Potri.002G257900.1 pacid=42778028 polypeptide=Potri.002G257900.1.p locus=Potri.002G257900 ID=Potri.002G257900.1.v4.1 annot-version=v4.1 MAGLVTGSSQTLHAKDELRPPTRQSATLKKCRVCGDEIGVKEDGEVFVACHVCGFPVCRPCYEYERSEGNQSCPQCNTRYKRHKGCPRVPGDNDDEDANF DDFEDEFQIKHHDHDESNQKNVFSHTEIEHYNEQEMQPIRPAFSSAGSVAGKDLEGEKEGYSNAEWQERVEKWKVRQEKRGLVSKDDGGNDQGEEDEYLM AEARQPLWRKIPIPSSRINPYRIVIVLRLIILCFFFRFRILTPAYDAYALWLISVICEVWFGLSWILDQFPKWNPIERETYLDRLSMRFEREGEPNRLGP VDVFVSTVDPLKEPPIITANTVLSILSVDYPVDKVSCYVSDDGASMLLFDSLAETAEFARRWVPFCKKHNIEPRAPEFYFTQKIDYLKDKVHPNFVKERR AMKREYEEFKVRINALVSKAQKKPEEGWVMQDGTPWPGNITRDHPGMIQVYLGSEGALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALIRVSAVLTN APFMLNLDCDHYINNSKAVREAMCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNVVFFDINMKGLDGVQGPVYVGTGCVFNRQSLYGYDPPVSEKRP KMTCDCWPSWCCCCCGGSRKKSKKKGQRSLLGGLYPMKKKMMGKKYTRKASAPVFDLEEIEEGLEGYEELEKSSLMSQKSFEKRFGQSPVFIASTLMENG GLPEGTNSQSHIKEAIHVISCGYEEKTEWGKEVGWIYGSVTEDILTGFKMHCRGWRSVYCSPQRPAFKGSAPINLSDRLHQVLRWALGSIEIFLSHHCPL WYGYGGKLKLLERLAYINTIVYPFTSIPLLAYCTIPAVCLLTGKFIIPTLNNLASIWFLALFISIIATSVLELRWSGVSIQDLWRNEQFWVIGGVSAHLF AVFQGLLKVLGGVDTNFTVTSKSADDAEFGELYLFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNR TPTIVVLWSILLASIFSLIWVRIDPFLPKQTGPILKQCGVEC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G44030		IRX5, NWS2, CES...	IRREGULAR XYLEM 5, cellulose s...		Potri.002G257900 [exp]	0	1
AT3G05270			Plant protein of unknown funct...		Potri.007G098500 [exp]	1.00	0.9796
AT5G17420		ATCESA7, MUR10,...	MURUS 10, IRREGULAR XYLEM 3, C...		Potri.018G103900 [exp]	2.00	0.9587
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Potri.007G135300 [exp]	2.23	0.9513
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Potri.006G056300 [exp]	3.31	0.9452
AT1G50010		TUA2	tubulin alpha-2 chain (.1)		Potri.002G111900 [exp]	3.87	0.9567
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Potri.013G157900 [exp]	4.00	0.9489	C4H2,CYP73.2
AT3G16920		ATCTL2	chitinase-like protein 2 (.1)		Potri.010G141600 [exp]	4.00	0.9552
AT3G23590		MED33A, RFR1	REF4-related 1 (.1)		Potri.008G201600 [exp]	4.35	0.9352
AT1G22060			unknown protein		Potri.006G120400 [exp]	4.47	0.9460
AT5G54690		IRX8, GAUT12, L...	IRREGULAR XYLEM 8, galacturono...		Potri.001G416800 [exp]	4.47	0.9342

Compare expression of checked genes

Potri.002G257900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.