Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08850 694 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT1G35710 677 / 0 Protein kinase family protein with leucine-rich repeat domain (.1) AT1G17230 601 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT4G20140 582 / 0 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G63930 578 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G33170 567 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G44700 561 / 6e-179 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT1G17750 520 / 4e-165 AtPEPR2 PEP1 receptor 2 (.1) AT5G48940 519 / 4e-164 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT3G24240 515 / 1e-162 Leucine-rich repeat receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G258400 [exp] 2064 / 0 AT1G35710 681 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.002G258200 [exp] 2046 / 0 AT4G08850 674 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.014G195100 [exp] 1808 / 0 AT1G35710 681 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.014G195200 [exp] 915 / 0 AT1G35710 715 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G120733 [exp] 729 / 0 AT1G35710 796 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G120700 [exp] 729 / 0 AT1G35710 796 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G129100 [exp] 714 / 0 AT1G35710 863 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.015G123800 [exp] 691 / 0 AT4G08850 751 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G099200 [exp] 678 / 0 AT4G08850 654 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003612 [exp] 1266 / 0 AT1G35710 751 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10008230 [exp] 953 / 0 AT4G20140 466 / 3e-147 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10020935 [exp] 722 / 0 AT4G08850 1011 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10008712 [exp] 721 / 0 AT4G08850 1009 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10002293 [exp] 646 / 0 AT1G35710 781 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10020936 [exp] 640 / 0 AT4G08850 793 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019036 [exp] 635 / 0 AT4G08850 891 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10004046 [exp] 609 / 0 AT4G08850 773 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019035 [exp] 608 / 0 AT4G08850 861 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10031161 [exp] 590 / 0 AT4G08850 710 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.002G258000.1 pacid=42779065 polypeptide=Potri.002G258000.1.p locus=Potri.002G258000 ID=Potri.002G258000.1.v4.1 annot-version=v4.1 ATGTCCAGCTTGCATAACCCAAGCATGGCAGCTTCTCAAAAGCTTTATGTTGCTCTCTTCCATGTTCTCCTTCTTTCCTTGTTTCCTTTGAAAGCCAAAT CATCTGCAAGAACACAAGCTGAAGCTCTCCTCCAATGGAAAAGCACCTTGTCTTTCTCACCTCCTCCTCTTAGTTCATGGTCTCGTTCCAACCTCAACAA CCTCTGCAAGTGGACTGCTGTTTCCTGCAGCTCCACCTCTCGATCAGTCTCTCAAATAAACCTCCGCAGCCTAAACATAACTGGAACACTCGCCCATTTC AACTTCACCCCATTTACTGATCTCACCAGGTTTGACATCCAGAGTAACAATGTCAATGGAACGATACCATCAGCCATTGGCAGCCTCTCCAAGCTCACTC ACTTGGACCTCAGTGCCAACCTCTTCGAGGGCAGCATACCTGTGGAGATATCTCAGTTGACAGAGCTTCAGTATCTTAGTCTTTACAACAACAATCTCAA CGGTATCATCCCCTTTCAACTTGCCAATCTTCCCAAGGTAAGACACTTGGACCTAGGAGCAAACTACCTCGAAAACCCTGACTGGTCCAAGTTTTCCATG CCTTCTTTGGAATATCTTAGTTTTTTTCTCAATGAACTTACTGCAGAATTCCCCCATTTTATAACCAATTGCCGGAACTTGACGTTTCTGGATTTGTCAC TCAATAAATTCACAGGCCAAATACCAGAATTGGTCTATACCAATCTGGGAAAGCTTGAGGCCTTGAATCTCTATAATAATTCATTCCTAGGACCATTGTC ATCCAACATTTCGAAGCTTTCCAATCTCAAAAACATCAGTCTACAAAATAACCTGTTGAGTGGTCAAATTCCCGAAAGCATTGGTTCGATATCTGGTCTT CAAATTGTTGAGTTGTTCGGCAATTCTTTCCAAGGAAATATTCCACCTTCTATAGGCCAACTTAAGCATCTTGAAAAGCTTGATCTCCGGATGAATGCCT TGAACTCAACGATCCCTCCTGAGCTTGGTCTTTGCACTAACCTCACCTACTTGACCTTGGCTGATAATCAACTAAGTGGGGAATTGCCTTTGTCTTTGTC CAATCTAGCTAAAATAGCAGATATGGGTTTATCTGAAAACTCTCTCTCCGGTGAGATCTCACCTACCCTTATATCCAACTGGACTGAATTGATCTCGCTT CAGGTTCAAAACAATTTGTTTTCTGGAAATATTCCTCCAGAAATTGGGAAATTGACAATGCTTCAATACCTTTTTCTGTATAATAACACATTCTCTGGTT CCATTCCCCCGGAGATAGGAAACTTGAAGGAGTTATTAAGTCTAGACCTTTCAGGAAACCAGCTTTCAGGCCCCCTTCCTCCAGCATTATGGAATCTCAC AAATCTTCAAATCCTGAATCTTTTCTCAAATAACATCAACGGTAAAATTCCACCAGAAGTTGGAAATTTGACGATGCTGCAAATTCTTGATCTCAACACC AACCAGCTCCATGGGGAGTTGCCACAGACCATTTCAAATATTACTTCTTTAACTTCCATCAATCTGTTTGGCAATAACCTCTCTGGTAGCATTCCAAGTA ATTTTGGGAAGTACATGCTTTCTCTGGCGTATGCTAGCTTTTCAAACAATAGTTTCTCTGGAGAATTGCCGCCTGAATTGTGTAGAGGTCGGAGTCTTCA ACAATTTACTGTCAACAGCAACAGTTTTACTGGGTCACTGCCAACCTGCTTTAGGAATTGTTCGGAGCTATCACGAGTTCGGCTTGAAAAGAACCGATTC ACTGGAAACATCACTGATGCATTTGGTGTCCTTCCAAATCTTGTTTTTGTTGCCCTCAGTGACAATCAATTTATTGGTGAAATCTCACCAGATTGGGGAG AATGTAAAAACCTCACCAATTTACAGATGGACGGAAACAGAATTTCTGGTGAAATCCCTGCTGAGCTTGGGAAGTTGCCCCAGCTGCGAGTTCTAAGTCT GGGCTCCAATGACCTGGCTGGGAGGATTCCTGCTGAACTGGGAAATCTGAGCAGGTTATTCATGCTCAACTTGAGCAACAATCAGTTGACAGGGGAGGTA CCTCAGAGTCTAACCAGCTTGGAAGGCCTTGAATATCTCGACTTATCTGATAACAAGCTGACTGGAAACATATCAAAAGAGCTTGGGAGTTATGAGAAGC TATCAAGCTTGGACTTGAGCCACAACAACCTTGCTGGTGAAATACCTTTTGAACTGGGTAACTTAAACTCGTTGCGGTACTTGTTGGATCTTAGCAGCAA CTCACTCTCAGGAGCCATACCTCAAAATTTTGCAAAGCTATCGCAGTTGGAGATTTTCAATGTCTCACATAACCATCTCTCAGGAAGAATCCCAGATTCG CTGTCTTCCATGCTTAGCCTGTCTTCTTTCGATTTCTCATACAATGAGTTGACAGGTCCTTTACCATCTGGAAGCGTTTTCAAAAATGCATCCCCAAGAT CTTTTGTTGGAAATTCAGGATTGTGCGGTGAAGGAGAAGGACTATCACAATGCCCAACAACAGACAGTAGCAAGTCCTCGAAGGATAACAAAAAGGTTCT TATTGGTGTTATCGTTCCTTTTTGTGGCTTATTAGTAATAGCAACTATCTTTGCTGTTCTGCTATGTTTCCGAAAAACCAAACTGCTTGATGAAGAGACC AAAATAGTCAACAATGGTGAGAGTTTCAAGTCAGTGATATGGGAAAGAGAAAGCAAATTCACATTTGGGGATATTGTCAAGGCCACTGATGACTTCAACG AGAAGTACTGCATTGGAAGAGGAGGATTTGGTAGTGTTTACAAAGCAGTATTGTCTACAGGTCAAGTAGTTGCAGTCAAGAAACTCAACATGTCAGACTC CAGTGACATCCCAGCAACCAATCGCCAGAGTTTCGAGAATGAGATTAAAATGCTGACAGAAGTTAGGCACCGGAACATCATAAAGCTTTATGGGTTTTGC TCCAGGAGGGGCTGCTTGTACCTGGTTTACGAGCATGTTGAAAGAGGAAGTCTGGGAAAAGTGTTGTATGGGATAGAAGGGGAAGTGGAGCTTGGTTGGG GCAGGAGAGTGAATACAGTGCGAGGAGTAGCTCATGCAATTGCCTACTTGCACCATGACTGTTCTCCGCCCATTGTGCACCGTGACATATCATTGAACAA CATTTTTCTAGAGACAGATTTTGAGCCACGTCTTGCGGATTTTGGCACAGCAAGACTCTTGAATACAGATTCCTCCAGCTGGACTGCAGTTGCTGGGTCT TATGGCTACATGGCTCCAGAACTGGCACAAACAATGCGGGTAACAGACAAATGTGATGTGTATAGCTTTGGGGTGGTGGCTTTGGAAGTCATGATGGGAA GGCACCCGGGAGACCTCTTATCCTCATTATCATCAATAAAACCATCATTGTTAAGCGATCCAGAGTTGTTTCTAAAGGATGTGCTAGACCCGCGGCTCGA AGCTCCCACAGGCCAAGCAGCAGAGGAAGTTGTTTTCGTAGTTACAGTGGCCTTAGCATGCACACAAACCAAGCCAGAGGCACGGCCCACCATGCATTTT GTGGCACAAGAATTATCAGCAAGAACTCAAGCTTACCTGGCTGAGCCACTGAACTCGATAACTATCAGCAAGTTGAGAAGTTTTCAAAAATAG
AA sequence Show only first row Show all	>Potri.002G258000.1 pacid=42779065 polypeptide=Potri.002G258000.1.p locus=Potri.002G258000 ID=Potri.002G258000.1.v4.1 annot-version=v4.1 MSSLHNPSMAASQKLYVALFHVLLLSLFPLKAKSSARTQAEALLQWKSTLSFSPPPLSSWSRSNLNNLCKWTAVSCSSTSRSVSQINLRSLNITGTLAHF NFTPFTDLTRFDIQSNNVNGTIPSAIGSLSKLTHLDLSANLFEGSIPVEISQLTELQYLSLYNNNLNGIIPFQLANLPKVRHLDLGANYLENPDWSKFSM PSLEYLSFFLNELTAEFPHFITNCRNLTFLDLSLNKFTGQIPELVYTNLGKLEALNLYNNSFLGPLSSNISKLSNLKNISLQNNLLSGQIPESIGSISGL QIVELFGNSFQGNIPPSIGQLKHLEKLDLRMNALNSTIPPELGLCTNLTYLTLADNQLSGELPLSLSNLAKIADMGLSENSLSGEISPTLISNWTELISL QVQNNLFSGNIPPEIGKLTMLQYLFLYNNTFSGSIPPEIGNLKELLSLDLSGNQLSGPLPPALWNLTNLQILNLFSNNINGKIPPEVGNLTMLQILDLNT NQLHGELPQTISNITSLTSINLFGNNLSGSIPSNFGKYMLSLAYASFSNNSFSGELPPELCRGRSLQQFTVNSNSFTGSLPTCFRNCSELSRVRLEKNRF TGNITDAFGVLPNLVFVALSDNQFIGEISPDWGECKNLTNLQMDGNRISGEIPAELGKLPQLRVLSLGSNDLAGRIPAELGNLSRLFMLNLSNNQLTGEV PQSLTSLEGLEYLDLSDNKLTGNISKELGSYEKLSSLDLSHNNLAGEIPFELGNLNSLRYLLDLSSNSLSGAIPQNFAKLSQLEIFNVSHNHLSGRIPDS LSSMLSLSSFDFSYNELTGPLPSGSVFKNASPRSFVGNSGLCGEGEGLSQCPTTDSSKSSKDNKKVLIGVIVPFCGLLVIATIFAVLLCFRKTKLLDEET KIVNNGESFKSVIWERESKFTFGDIVKATDDFNEKYCIGRGGFGSVYKAVLSTGQVVAVKKLNMSDSSDIPATNRQSFENEIKMLTEVRHRNIIKLYGFC SRRGCLYLVYEHVERGSLGKVLYGIEGEVELGWGRRVNTVRGVAHAIAYLHHDCSPPIVHRDISLNNIFLETDFEPRLADFGTARLLNTDSSSWTAVAGS YGYMAPELAQTMRVTDKCDVYSFGVVALEVMMGRHPGDLLSSLSSIKPSLLSDPELFLKDVLDPRLEAPTGQAAEEVVFVVTVALACTQTKPEARPTMHF VAQELSARTQAYLAEPLNSITISKLRSFQK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G08850			Leucine-rich repeat receptor-l...		Potri.002G258000 [exp]	0	1
AT4G08850			Leucine-rich repeat receptor-l...		Potri.002G258200 [exp]	1.41	0.8876
AT1G35710			Protein kinase family protein ...		Potri.002G258400 [exp]	4.24	0.8623
AT2G18193			P-loop containing nucleoside t...		Potri.007G020500 [exp]	8.83	0.8265
AT2G27430			ARM repeat superfamily protein...		Potri.004G055500 [exp]	14.49	0.8144
AT5G25930			Protein kinase family protein ...		Potri.006G235800 [exp]	14.96	0.8398
AT5G25930			Protein kinase family protein ...		Potri.006G235450 [exp]	16.15	0.7996
AT5G25930			Protein kinase family protein ...		Potri.006G235500 [exp]	18.84	0.8333
AT3G16720		ATL2	TOXICOS EN LEVADURA 2 (.1)		Potri.010G010500 [exp]	20.78	0.7607
AT1G28280			VQ motif-containing protein (....		Potri.011G053700 [exp]	22.53	0.6295
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Potri.001G270600 [exp]	22.97	0.8051

Compare expression of checked genes

Potri.002G258000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.