Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08850 673 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT1G35710 670 / 0 Protein kinase family protein with leucine-rich repeat domain (.1) AT4G20140 576 / 0 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G17230 575 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT5G63930 555 / 5e-178 Leucine-rich repeat protein kinase family protein (.1) AT5G44700 549 / 2e-174 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT2G33170 544 / 1e-173 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT1G17750 503 / 1e-158 AtPEPR2 PEP1 receptor 2 (.1) AT5G48940 503 / 2e-158 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G07280 504 / 7e-158 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G258400 [exp] 1996 / 0 AT1G35710 681 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.002G258000 [exp] 1987 / 0 AT4G08850 695 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.014G195100 [exp] 1789 / 0 AT1G35710 681 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.014G195200 [exp] 905 / 0 AT1G35710 715 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G120733 [exp] 726 / 0 AT1G35710 796 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G120700 [exp] 726 / 0 AT1G35710 796 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G129100 [exp] 709 / 0 AT1G35710 863 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.015G123800 [exp] 681 / 0 AT4G08850 751 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G123700 [exp] 659 / 0 AT4G08850 688 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003612 [exp] 1261 / 0 AT1G35710 751 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10008230 [exp] 952 / 0 AT4G20140 466 / 3e-147 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10008712 [exp] 692 / 0 AT4G08850 1009 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020935 [exp] 692 / 0 AT4G08850 1011 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10002293 [exp] 639 / 0 AT1G35710 781 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10004046 [exp] 613 / 0 AT4G08850 773 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019036 [exp] 613 / 0 AT4G08850 891 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020936 [exp] 611 / 0 AT4G08850 793 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019035 [exp] 588 / 0 AT4G08850 861 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10031161 [exp] 560 / 0 AT4G08850 710 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.002G258200.3 pacid=42777671 polypeptide=Potri.002G258200.3.p locus=Potri.002G258200 ID=Potri.002G258200.3.v4.1 annot-version=v4.1 ATGCATAACCCAAGCATGGCAGCTTCTCAAAACCTTTATGTTGCTCTCTTCCATCTTCTCCTTCTTTCCTTGTTTCCCTTGAAGGCCAAATCATCTGCAA GAACACAAGCTGAAGCTCTCCTCCAATGGAAAAGCACCTTGTCCTTTTCACCTCCTACTCTTAGTTCATGGTCACGTTCCAACCTCAACAACCTCTGCAA GTGGACTGCTGTTTCCTGCAGCTCCACCTCTCGAACAGTCTCACAAATAAACCTCCGCAGCCTAAACATAACTGGAACACTCGCCCATTTCAACTTCACC CCTTTTACTGGTCTCACCACGTTTGACATCCAGAATAACAACGTCAATGGAACGATACCATCAGCCATTGGCAGCCTCTCCAACCTCACTCACTTGGACC TCAGTGTCAACTTCTTCGAGGGCAGCATACCTGTGGAGATATCTCAGTTGACAGAGCTTCAGTATCTTAGTCTTTACAACAACAATCTCAACGGTATCAT CCCCTTTCAACTTGCAAATCTTCCCAAGGTAAGACACTTGGACCTTGGAGCAAACTACCTCGAAAACCCTGACTGGTCCAACTTTTCCATGCCTTCTTTG GAATATCTTAGTTTTTTTCTCAATGAACTTACTGCAGAATTCCCCCATTTTATAACCAATTGCCGGAACTTGACGTTTCTGGATTTGTCACTCAATAAAT TCACAGGCCAAATACCAGAATTGGTCTATACCAATCTGGGAAAGCTTGAGGCCTTGAATCTCTATAACAATTCATTCCAAGGACCATTGTCATCCAACAT TTCGAAGCTTTCCAATCTCAAAAACATCAGTCTACAAAATAACCTGTTGAGTGGTCAAATTCCCGAAAGCATTGGTTCGATATCTGGTCTTCAAATTGTT GAGTTGTTCAGCAATTCTTTCCAAGGAAATATCCCATCTTCTATAGGCAAACTTAAGCATCTTGAAAAACTTGATCTCCGGATAAATGCCTTGAACTCAA CGATCCCTCCTGAGCTTGGTCTTTGCACTAACCTCACCTACTTGGCCTTGGCTGATAATCAGCTAAGGGGGGAATTGCCTTTGTCTTTGTCCAATCTATC TAAAATAGCACAAATGGGTTTATCTGAAAACTCTCTCTCCGGTGAGATCTCACCTACCCTTATATTCAACTGGACTGAATTGACCTCGTTTCAGGTTCAA AACAATTTGTTTTCTGGGAATATTCCTCCAGAAATTGGGAAGTTGACAATGCTTCAATACCTTTTTCTGTATAATAACACATTCTCTGGTTCCATTCCCC CGGAGATAGGAAACTTGAAGGAGTTATTAAGTCTAGACCTTTCAGCAAACCAGCTTTCAGGCCCCCTTCCTCCAGCATTATGGAATCTCACAAATCTTCA AATCCTGAATCTTTTCTCAAATAACATCAACGGTAAAATTCCACCAGAAGTTGGAAATTTGACGATGCTGCAAACTCTTGATCTCAACACCAACCAGCTC CATGGGGAGTTGCCACAGACCATTTCAAATATTACTTCTTTAACTTCCATCAATCTGTTTGGCAATAACCTCTCTGGTAGCATTCCAAGTGATTTTGGGA AGTACATGCCTTCTCTGGCGAATGCTAGCTTTTCAAACAATAGTTTCTCTGGAGAATTGCCGCCTGAATTGTGTAGAGGTCTGAGTCTTAAACAATTTAC TGTCAACAGCAACAGTTTTAATGGGTCGCTGCCAACCTGCTTGAGGAATTGTTCGGAGCTATCACGAGTTCGGCTTGAAAAGAACCGATTCACTGGAAAC ATCACTGATGCATTTGGTGTCCTTCCAAATCTTGGTTTTGTTGCCCTCAGTGACAATCAATTTATTGGTGAAATCTCACCAGATTGGGGAGAATGTAAAA ACCTCACCAATTTACAGATGGACGGAAACAGAATTTCTGGTGAAATCCCTGCTGAGCTTGGGAAGTTGCCCCAGCTGCGAGTTCTAAGTCTGGGCTCCAA TGACCTGGCTGGGAGGATTCCTGCTGAACTGGGAAATCTGAGCAGGTTATTCATGCTCAACTTGAGCAACAATCAGTTGACAGGGGAGGTACCTCAGAGT CTAACCAGCTTGGAAAGCCTTGAATCCCTCGACTTATCTGATAACAAGCTGGCTGGAAACATATCAAAAGAGCTTGGGAGTTATGAGAAGCTATCAAGCT TGGACTTGAGCCACAACAACCTTGCTGGTGAAATACCTTTTGAACTGGGCAACTTAAACTCGTTGCGGTACTTGTTGGATCTTAGCAGCAACTCACTCTC AGGAGCCATACCTCAAAATTTTGCAAAGCTATCGCAGTTGGAGATTCTCAATGTCTCACATAACCATCTCTCAGGAAGAATCCCAGATTCGCTGTCTTCC ATGCGTAGCCTGTCTTCTTTTGATTTCTCATACAATGAGTTGACAGGTCCTATACCAACTGGAAGCATTTTCAAAAATGCACCCGCAAGATCTTTTGTTC GAAATTCAGGATTGTGCGGTGAAGGAGAAGGACTATCACAATGTCCAACAACAGACAGTAGCAAGACCTCGAAGGTTAACAAAAAGGTTCTTATTGGTGT TATCGTTCCGGTTTGTGGCTTATTAGTAATAGCAACTATCTTTGCTGTTCTGCTATGTTTCCGAAAAACCAAACTGCTTGATGAAGAGACCAAAATAGTC AACAATGGTGAGAGTTTCAAGTCAGTGATATGGGAAAGAGAAAGCAAATTCACATTTGGGGATATTGTCAAGGCCACTGATGACTTCAACGAGAAGTACT GCATTGGAAGAGGAGGATTTGGTAGTGTTTACAAAGCAGTATTGTCTACAGGTCAAGTAGTTGCAGTCAAGAAACTCAACATGTCAGACTCCAGTGACAT CCCAGCAACCAATCGCCAGAGTTTCGAGAATGAGATTAAAATGCTGACAGAAGTTAGGCACCGGAACATCATAAAGCTTTATGGGTTTTGCTCCAGGAGG GGCTGCTTGTACCTGGTTTACGAGCATGTTGAAAGAGGAAGTCTGGGAAAAGTGTTGTATGGGAAAGAGGGGGAAGTGGAGCTTGGTTGGGGCAGGAGAG TGAATACAGTGCGAGGAGTAGCTCATGCAATTGCCTACTTGCACCGTGACTGTTCTCCGCCCATTGTGCACCGTGACATATCACTGAACAACATTTTGCT CGAGACAGATTTTGAGCCACGTCTTGCGGATTTTGGCACAGCAAGACTCTTGAATACAGGTTCCTCCAACTGGACTGCAGTTGCTGGGTCTTATGGCTAC ATGGCTCCAGAACTGGCACAAACAATGCGGGTCACAGACAAATGCGATGTGTATAGCTTTGGGGTGGTGGCTTTGGAAGTCATGATGGGAAGGCACCCGG GAGACCTCTTATCCTCATTATCATCAATCAAACCATCATTGTCAAGCGATCCAGAGTTGTTTCTAAAGGATGTGCTAGACCCGCGGCTCGAAGCTCCCAC AGGCCAAGCAGCAGAGGAAGTTGTTTTCGTAGTTACAGTGGCCTTAGCATGCACACAAACCAAGCCAGAGGCACGGCCCACCATGCATTTTGTGGCACGA GAATTATCAGCAAGAACTCAAGCTTACCTGGCTGAGCCACTGGACTCGATAACTATCAGCAAGTTGAGAAGTTTTCAAAAATAG
AA sequence Show only first row Show all	>Potri.002G258200.3 pacid=42777671 polypeptide=Potri.002G258200.3.p locus=Potri.002G258200 ID=Potri.002G258200.3.v4.1 annot-version=v4.1 MHNPSMAASQNLYVALFHLLLLSLFPLKAKSSARTQAEALLQWKSTLSFSPPTLSSWSRSNLNNLCKWTAVSCSSTSRTVSQINLRSLNITGTLAHFNFT PFTGLTTFDIQNNNVNGTIPSAIGSLSNLTHLDLSVNFFEGSIPVEISQLTELQYLSLYNNNLNGIIPFQLANLPKVRHLDLGANYLENPDWSNFSMPSL EYLSFFLNELTAEFPHFITNCRNLTFLDLSLNKFTGQIPELVYTNLGKLEALNLYNNSFQGPLSSNISKLSNLKNISLQNNLLSGQIPESIGSISGLQIV ELFSNSFQGNIPSSIGKLKHLEKLDLRINALNSTIPPELGLCTNLTYLALADNQLRGELPLSLSNLSKIAQMGLSENSLSGEISPTLIFNWTELTSFQVQ NNLFSGNIPPEIGKLTMLQYLFLYNNTFSGSIPPEIGNLKELLSLDLSANQLSGPLPPALWNLTNLQILNLFSNNINGKIPPEVGNLTMLQTLDLNTNQL HGELPQTISNITSLTSINLFGNNLSGSIPSDFGKYMPSLANASFSNNSFSGELPPELCRGLSLKQFTVNSNSFNGSLPTCLRNCSELSRVRLEKNRFTGN ITDAFGVLPNLGFVALSDNQFIGEISPDWGECKNLTNLQMDGNRISGEIPAELGKLPQLRVLSLGSNDLAGRIPAELGNLSRLFMLNLSNNQLTGEVPQS LTSLESLESLDLSDNKLAGNISKELGSYEKLSSLDLSHNNLAGEIPFELGNLNSLRYLLDLSSNSLSGAIPQNFAKLSQLEILNVSHNHLSGRIPDSLSS MRSLSSFDFSYNELTGPIPTGSIFKNAPARSFVRNSGLCGEGEGLSQCPTTDSSKTSKVNKKVLIGVIVPVCGLLVIATIFAVLLCFRKTKLLDEETKIV NNGESFKSVIWERESKFTFGDIVKATDDFNEKYCIGRGGFGSVYKAVLSTGQVVAVKKLNMSDSSDIPATNRQSFENEIKMLTEVRHRNIIKLYGFCSRR GCLYLVYEHVERGSLGKVLYGKEGEVELGWGRRVNTVRGVAHAIAYLHRDCSPPIVHRDISLNNILLETDFEPRLADFGTARLLNTGSSNWTAVAGSYGY MAPELAQTMRVTDKCDVYSFGVVALEVMMGRHPGDLLSSLSSIKPSLSSDPELFLKDVLDPRLEAPTGQAAEEVVFVVTVALACTQTKPEARPTMHFVAR ELSARTQAYLAEPLDSITISKLRSFQK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G08850			Leucine-rich repeat receptor-l...		Potri.002G258200 [exp]	0	1
AT4G08850			Leucine-rich repeat receptor-l...		Potri.002G258000 [exp]	1.41	0.8876
AT5G23360			GRAM domain-containing protein...		Potri.017G152900 [exp]	10.00	0.6805
AT3G46280			protein kinase-related (.1)		Potri.005G043700 [exp]	12.40	0.6668
AT4G29810		MK1, ATMKK2	MAP KINASE KINASE 1, MAP kinas...		Potri.018G050800 [exp]	13.26	0.6194	Pt-MEK1.2
AT3G57530		ATCPK32, CDPK32...	calcium-dependent protein kina...		Potri.006G052900 [exp]	15.49	0.6042	CPK14.1
AT1G11330			S-locus lectin protein kinase ...		Potri.011G039100 [exp]	15.81	0.6492
AT1G28280			VQ motif-containing protein (....		Potri.011G053700 [exp]	18.54	0.6019
AT2G33580			Protein kinase superfamily pro...		Potri.005G259600 [exp]	21.28	0.7094
AT2G29060	GRAS		GRAS family transcription fact...		Potri.001G242000 [exp]	41.49	0.6241
AT1G26810		GALT1	galactosyltransferase1 (.1)		Potri.010G168500 [exp]	42.96	0.5780

Compare expression of checked genes

Potri.002G258200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.