Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04030 172 / 9e-49 unknown protein AT5G44040 145 / 9e-39 unknown protein AT2G30820 64 / 5e-11 unknown protein AT1G06660 61 / 6e-10 JASON JASON, unknown protein AT2G33400 49 / 4e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G047700 [exp] 144 / 3e-38 AT1G04030 147 / 1e-39 unknown protein Potri.002G057000 [exp] 82 / 2e-16 AT1G06660 325 / 7e-106 JASON, unknown protein Potri.005G205700 [exp] 78 / 2e-15 AT1G06660 275 / 6e-87 JASON, unknown protein Potri.008G170600 [exp] 77 / 3e-15 AT2G33400 69 / 2e-13 unknown protein Potri.010G067300 [exp] 62 / 2e-10 AT2G33400 79 / 1e-16 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003613 [exp] 206 / 1e-61 AT1G04030 211 / 1e-63 unknown protein Lus10008231 [exp] 174 / 3e-49 AT1G04030 202 / 1e-59 unknown protein Lus10001051 [exp] 66 / 2e-11 AT1G06660 283 / 6e-90 JASON, unknown protein Lus10020732 [exp] 64 / 1e-10 AT1G06660 310 / 1e-100 JASON, unknown protein Lus10001417 [exp] 62 / 3e-10 AT1G06660 228 / 3e-69 JASON, unknown protein Lus10029611 [exp] 59 / 4e-09 AT1G04030 61 / 3e-10 unknown protein Lus10023739 [exp] 52 / 5e-07 AT2G33400 95 / 1e-22 unknown protein Lus10011782 [exp] 52 / 6e-07 AT2G33400 83 / 3e-18 unknown protein Lus10032776 [exp] 51 / 6e-07 AT5G44040 59 / 7e-10 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G258501.1 pacid=42777319 polypeptide=Potri.002G258501.1.p locus=Potri.002G258501 ID=Potri.002G258501.1.v4.1 annot-version=v4.1 ATGGCTTGCTTTCTTGCGTGTTTTGGTTCATCCAAAGAACGCAAACGTCGTAGGCACAGTAAGGTTCAACCACGAGTCCATAGAAAGGAAGGTTATGGGA GTCCAGTGGAAGCTACCGTTTCAGTGGTTAAGGACTGCTGCCCAGAGAAGCCTATTGTGAGCCCAGCTTCAGAAATCAGGGATGATGGGTCTGAGGAGAA ATTAAGCTTGAGTACGAGAAAGAAAGTGACATTCAATTCGAATGTGACAACCTACGATCATGTTTCAGTTGAAGAATCCTCAGATTTTACTTTGGGGAAA GAAGATTGTGGCGATAAAAGGGAGGGAAAGGAGGAGAATATTGCAAAACCAAGTCAATCTCAGTCTTCTTCTGAAGATAGTTCAATTGCATCAAGCTTGT GTTCTTACCCTCCTAATCATCGTTATCAGAATTGTAGAGACAGTGATGATGAGATGGGCTATGAGGAAAGTGATATTGATGAGAGTGATGATGATGATGA GGAGGAGGAGGAGGAGGAGGACGGGGGGCTAGATTATGATGATGTATATGAGGATGATGAAACCGCAGAGTCAACGTCTAGAATGTCTAAATTGGCTAAC GAGGAGAATGATAGTGACGTGATGAACAGTGGTTTGTCTGGGAATAGGAATTTTCGAGATAGGAGAGCTGCTGTGCTGAACCCAGTTGAAAATCTAAGTC AATGGAAGATTGTAAAAGCAAAAGGAAAACCATCATTGAGGCAACAGAAAGAGAATCTGACATTGGATCAAGAACCTCGAATGTCGTTTAGTTCCGAGCC TGGTTTTAAGGAATTGGCATTCAGTTTCAAGGCAAAAGCTGGTCAATGTAATAAGAAGCCAGACCAAGAAATAGCGGTGGATACTAGCTTGTCTAATTGG TTGGGTTCATCTGAATGCACACCAGTCAATAAGCCTGGATCAATTGGTTTAGATGCCATTGCACCTGAGAAAAGCATGTCACAGGGATCTAATTCACCAA GAAGCTTTGATGATAGGCCTATTCTTGGGGCACTAACGGTGGAAGAGCTTAAACAGCTTTCAGCTACTTCTTCTTCAAGGAGGTCACCAAGTCGTAGCCC TGATGAGATGCCAATAATAGGAACTGTTGGGACTTATTGGAATCACGGTGGCTCCGGCAAGGATTCTGGCTCGGCCTCTTCATACAAAGGAATTCCCAAC ACGACCAGCAAATACAGAGAGGACAAAAGAGTGAATTGGCACTCCACTCCATTTGAGACACGACTGGAGAGAGCTTTGAATGGTGGTGATGCTGCTCCAA CCTACTCAACTCACACTATTGTTCGTTAA
AA sequence Show only first row Show all	>Potri.002G258501.1 pacid=42777319 polypeptide=Potri.002G258501.1.p locus=Potri.002G258501 ID=Potri.002G258501.1.v4.1 annot-version=v4.1 MACFLACFGSSKERKRRRHSKVQPRVHRKEGYGSPVEATVSVVKDCCPEKPIVSPASEIRDDGSEEKLSLSTRKKVTFNSNVTTYDHVSVEESSDFTLGK EDCGDKREGKEENIAKPSQSQSSSEDSSIASSLCSYPPNHRYQNCRDSDDEMGYEESDIDESDDDDEEEEEEEDGGLDYDDVYEDDETAESTSRMSKLAN EENDSDVMNSGLSGNRNFRDRRAAVLNPVENLSQWKIVKAKGKPSLRQQKENLTLDQEPRMSFSSEPGFKELAFSFKAKAGQCNKKPDQEIAVDTSLSNW LGSSECTPVNKPGSIGLDAIAPEKSMSQGSNSPRSFDDRPILGALTVEELKQLSATSSSRRSPSRSPDEMPIIGTVGTYWNHGGSGKDSGSASSYKGIPN TTSKYREDKRVNWHSTPFETRLERALNGGDAAPTYSTHTIVR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04030			unknown protein		Potri.002G258501 [exp]	0	1
AT2G33400			unknown protein		Potri.010G067300 [exp]	1.00	0.9857
AT5G16250			unknown protein		Potri.008G078000 [exp]	1.41	0.9855
AT5G03870			Glutaredoxin family protein (....		Potri.006G212700 [exp]	2.44	0.9777
AT1G26760		SDG35, ATXR1	SET domain protein 35 (.1)		Potri.008G089500 [exp]	2.82	0.9740	SDG942
AT5G01420			Glutaredoxin family protein (....		Potri.008G016100 [exp]	4.24	0.9689
AT4G31840		AtENODL15	early nodulin-like protein 15 ...		Potri.006G184100 [exp]	5.29	0.9657
AT3G20060		UBC19	ubiquitin-conjugating enzyme19...		Potri.009G049600 [exp]	6.32	0.9641	Pt-UBC19.1
AT4G02800			unknown protein		Potri.005G209400 [exp]	6.32	0.9717
AT4G38070	bHLH		basic helix-loop-helix (bHLH) ...		Potri.011G131500 [exp]	6.63	0.9624
AT1G31335			unknown protein		Potri.003G148100 [exp]	6.92	0.9606

Compare expression of checked genes

Potri.002G258501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.