Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14300 277 / 1e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G33410 258 / 3e-82 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G55550 247 / 2e-77 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT3G07810 234 / 3e-72 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G26650 233 / 3e-72 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G47620 224 / 5e-69 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT1G58470 172 / 7e-50 XF41, ATRBP1 RNA-binding protein 1 (.1) AT3G13224 162 / 7e-46 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G17640 160 / 2e-45 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G40490 160 / 1e-44 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G195300 [exp] 355 / 8e-120 AT4G14300 305 / 2e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.008G170400 [exp] 303 / 4e-99 AT4G14300 317 / 2e-104 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.010G067500 [exp] 296 / 2e-96 AT4G14300 302 / 7e-99 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G222400 [exp] 243 / 2e-75 AT3G07810 439 / 8e-151 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.011G088100 [exp] 241 / 8e-75 AT3G07810 428 / 1e-146 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G361300 [exp] 240 / 1e-74 AT3G07810 433 / 1e-148 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.014G161600 [exp] 236 / 8e-73 AT3G07810 498 / 3e-174 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G015700 [exp] 236 / 8e-73 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.016G010200 [exp] 230 / 1e-70 AT3G07810 413 / 2e-140 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022889 [exp] 310 / 7e-103 AT4G14300 315 / 9e-105 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10024937 [exp] 300 / 2e-98 AT4G14300 306 / 4e-101 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10043124 [exp] 293 / 2e-95 AT2G33410 334 / 2e-111 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10032624 [exp] 292 / 5e-95 AT2G33410 335 / 2e-112 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10043168 [exp] 246 / 1e-76 AT3G07810 456 / 2e-157 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10032579 [exp] 244 / 4e-76 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10039053 [exp] 231 / 5e-71 AT3G07810 417 / 1e-142 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10023740 [exp] 228 / 8e-71 AT4G14300 276 / 6e-90 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10038806 [exp] 231 / 3e-70 AT3G07810 417 / 2e-141 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10039054 [exp] 228 / 4e-70 AT3G07810 428 / 4e-147 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.002G258600.1 pacid=42778004 polypeptide=Potri.002G258600.1.p locus=Potri.002G258600 ID=Potri.002G258600.1.v4.1 annot-version=v4.1 ATGGATTCGGACGAAGGAAAGCTGTTCGTAGGAGGAATAGCATGGGACACAACCGAAGACACGCTAAGAGACCACTTCAACCAGTACGGTGAGGTCTCTC AGGTTGTCATAATGCGTGACAAGACCACTGGTCGTCCTCGTGGCTTTGGTTTTGTCGTTTTCTCCGATCCCTCTGTTCTAGATCCTGTTCTTCACGATAA ACACACCATCGATGGCCGTACTGTGGAGGCGAAAAGGGCTTTATCGAGAGAAGAACAGCATACATCATCTAGAACCGGGAGTTTTAATGGTGGTAGAGGC TCTGGTGGTGCAGGGGATTTTAGGACGAAAAAGATTTTTGTTGGTGGCTTGCCTTCCACCGTGACAGAAGATGGATTCCGTCAGTATTTTCAAAGTTATG GTCATGTAAATGATGTTGTAGTAATGTATGACCAGCAGACTCAAAGGCCTCGTGGATTTGGATTTATCACCTTCGATTCTGAAGATGCAGTTGATAATGT ACTCCAGAAGACCTTTCATGAGTTGAATGGTAAACTTGTAGAGGTAAAACGAGCACTCCCAAAAGATGCAAATCCAGGTAGTGAGGGGCGTGGTAGTGGC TATCGTAGTTATGGCTCCGCTGGAGCCAATGTAAATGCAGCTGATGGTCGAATGGATGGAAACCGGTATATGCAGCCCCAAACTTCTGTAGGTGGTTACC CACCTTATTCTGGATATGCTGCTCATGGTTATGGTTACGGAGCAGCAAACAGTGGAGTTGGTTATTATGGCAGTTATGGTGTTAGTGGTTATGGTGGTGG AAATGGCGGATATGGTACGGGAGTGTATGGCATGTCTGCTGCTGTAAAAAATAGTTGGGGCAGCCAAGCTCCTTCGAGTTATGGTGCTTCCGGCTATGGT GCAAATGCAGGCTATGGGGCTGCATTTCCCTGGAGTGCTTCTGGTAGCGGTGGTTCTGCTTCTGCTCCTATGGGTCAATATCCAACTGGAGCGTCTGGGT ATGGAAATCAAGGCTATGGTTATGGTAATTATGGTGGAAGTGATGGTCCTTATTCTGGTGGCTATGGAGCTACTGGAGGGCGTGCTGGGAATGCTCCAAA TGGCAGTGCCAGCAATGGAGCTGGTGGGGGAGAGCAACAGGGGAGTGGGAGCTACTATGGTGACAGTAATGGGAATTCAGGATATGCAAATGAAGCCTGG AGGTCTGATCCTTCGCAAGCCTCTGGTGGTTACGGTGGTGCTCATTCAAGATAG
AA sequence Show only first row Show all	>Potri.002G258600.1 pacid=42778004 polypeptide=Potri.002G258600.1.p locus=Potri.002G258600 ID=Potri.002G258600.1.v4.1 annot-version=v4.1 MDSDEGKLFVGGIAWDTTEDTLRDHFNQYGEVSQVVIMRDKTTGRPRGFGFVVFSDPSVLDPVLHDKHTIDGRTVEAKRALSREEQHTSSRTGSFNGGRG SGGAGDFRTKKIFVGGLPSTVTEDGFRQYFQSYGHVNDVVVMYDQQTQRPRGFGFITFDSEDAVDNVLQKTFHELNGKLVEVKRALPKDANPGSEGRGSG YRSYGSAGANVNAADGRMDGNRYMQPQTSVGGYPPYSGYAAHGYGYGAANSGVGYYGSYGVSGYGGGNGGYGTGVYGMSAAVKNSWGSQAPSSYGASGYG ANAGYGAAFPWSASGSGGSASAPMGQYPTGASGYGNQGYGYGNYGGSDGPYSGGYGATGGRAGNAPNGSASNGAGGGEQQGSGSYYGDSNGNSGYANEAW RSDPSQASGGYGGAHSR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G14300			RNA-binding (RRM/RBD/RNP motif...		Potri.002G258600 [exp]	0	1
AT1G68760		ATNUDX1, ATNUDT...	NUDIX HYDROLASE 1, ARABIDOPSIS...		Potri.008G114300 [exp]	2.00	0.8012
AT4G24940		ATSAE1A, AT-SAE...	SUMO-activating enzyme 1A (.1)		Potri.015G099000 [exp]	6.00	0.7552
AT2G23090			Uncharacterised protein family...		Potri.002G120100 [exp]	6.63	0.7744
AT1G55790			Domain of unknown function (DU...		Potri.006G002700 [exp]	9.38	0.7818
AT5G19440			NAD(P)-binding Rossmann-fold s...		Potri.009G057600 [exp]	11.66	0.7510	CCRL2,CCR.9
AT5G49320			Protein of unknown function (D...		Potri.010G140400 [exp]	13.41	0.7675
AT3G17880		ATHIP2, ATTDX	HSC-70 INTERACTING PROTEIN, AR...		Potri.015G036000 [exp]	17.02	0.7562	ATTDX.2
AT5G20900	ZIM	TIFY3B, JAZ12	jasmonate-zim-domain protein 1...		Potri.006G217200 [exp]	18.33	0.7514
AT5G38220			alpha/beta-Hydrolases superfam...		Potri.004G097300 [exp]	19.26	0.7174
AT5G18290		SIP1B, SIP1;2	SMALL AND BASIC INTRINSIC PROT...		Potri.014G154400 [exp]	19.36	0.7737

Compare expression of checked genes

Potri.002G258600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.