Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PTR2.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46050 695 / 0 ATPTR3, PTR3 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) AT5G46040 679 / 0 Major facilitator superfamily protein (.1) AT2G40460 583 / 0 Major facilitator superfamily protein (.1) AT3G54140 490 / 7e-168 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT2G02040 484 / 3e-165 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT5G01180 481 / 2e-164 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT1G62200 461 / 2e-156 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT2G02020 423 / 5e-142 AtPTR4 peptide transporter 4, Major facilitator superfamily protein (.1.2) AT3G54450 409 / 2e-136 Major facilitator superfamily protein (.1) AT1G22540 395 / 4e-131 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G258900 [exp] 908 / 0 AT5G46050 730 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.010G068100 [exp] 784 / 0 AT5G46050 829 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.008G170100 [exp] 776 / 0 AT5G46050 816 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.019G055800 [exp] 584 / 0 AT2G40460 874 / 0.0 Major facilitator superfamily protein (.1) Potri.010G100200 [exp] 503 / 7e-173 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.009G042400 [exp] 474 / 1e-161 AT3G54140 832 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.016G111800 [exp] 472 / 6e-161 AT3G54140 893 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.001G248600 [exp] 471 / 2e-160 AT3G54140 834 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.006G096800 [exp] 470 / 4e-160 AT3G54140 896 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008232 [exp] 800 / 0 AT5G46050 729 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10003614 [exp] 798 / 0 AT5G46050 726 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10022891 [exp] 776 / 0 AT5G46050 714 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10011786 [exp] 764 / 0 AT5G46050 831 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10022892 [exp] 760 / 0 AT5G46050 688 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10023743 [exp] 754 / 0 AT5G46050 827 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10024935 [exp] 716 / 0 AT5G46050 654 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10034206 [exp] 536 / 0 AT2G40460 783 / 0.0 Major facilitator superfamily protein (.1) Lus10024933 [exp] 498 / 4e-173 AT5G46050 467 / 2e-161 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10040099 [exp] 492 / 2e-168 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00854 [poplar] [flax] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Potri.002G258700.1 pacid=42778625 polypeptide=Potri.002G258700.1.p locus=Potri.002G258700 ID=Potri.002G258700.1.v4.1 annot-version=v4.1 ATGATTTGTAAAGTAGAAGAAAAAGGAGCTGCAGATGGAAGCAAAGATTATACAGAAGATGGGACTGTGGACATCAAGGGCAATCCTGCGTTAAGATCAA AGTCAGGAAGATGGAAAGCTTGTTCCTTTATATTAGGGTATGAAGTGTTTGAGAGGATGGCATACTACGGGATAGCAGCGAATCTAGTGTTGTATTTGAC AAGGAAGCTCCATGAAGGCACTGTAACATCTTCAAACAATGTCACCAACTGGGCTGGTACTGTATGGATATTGCCGATTTTGGGTGCTTACATTGCAGAT GCTCATCTGGGCCGATTCAGGACTTTTGTCATTGCATCAGGAATTTATCTACTGGGAATGTCCCTGTTAACCCTGGCTGTTTCGGTGCCTGCCCTGAGGC CACCATCCTGCGGTCATGGCATCAAAGACGAGGGATGTGACAAAAGGGCCTCAGCCTTACAGAAGGGCATATTCTACGGTGCACTATACATAATAGCAGT TGGTACTGGTGGAACCAAGCCCAACATCTCTACCATGGGGGCAGACCAATTCGACGATTTTGAACCCAAGGAAAAGCAGCAGAAGCTCTCATTCTTCAAC TGGTGGATGTTCAGTATTTTCTTTGGCACTCTTTTCTCAAACACATTCTTGGTTTACATACAAGACAACGTAAATTGGGCCCTTGGTTATGGCATTCCTA CCATGGGGCTCGCACTTTCGATCATTATGTTCTTGGCCGGCAATTCATTCTATAGGCACAAATTGCCTGCAGGGAGTCCGTTCACCAAGATGGCACAAGT ACTTGTGGCTTCTGTTAGGAAGTGGAAGGTTAGCCTCCCAAATGATCCAAAAGAGCTTCACGAACTAGGGATAGAAGGGTCTGCTAGATCTGCAAGAAAT AGGATTGACCATACTTATTTATTAAGATTGCTTGACAAAGCTGCTGTAAAGAGTGGACCAACCTCACCTTGGATGCTATGTCCAGTGACTCAAGTTGAAG AAACCAAGCAAATGATAAAAATGCTTCCTGTTTTAATGGTCACATTCATACCTAGTGCCATGCTAGCTCAATTAAGCACGTTTTTCGTCAAACAAGGGAC AACCTTAGACAGAAGCATGGGACCCCATTTCGAAATCCCTCCGGCAAGCCTCGGAGCATTTGTGACAATCTTCATGCTGGCAAGCCTCGTGTTGTATGAT CGTTGCTTTGTCCCAATAGCTAGACACTACACAAAAAACCCAAGAGGGATTACTATGCTGCAAAGAATGGGGATTGGTATTATCTTGCATATTATTGTCA TGATCGTAGCTTTCGTAGTTGAAAGGAAAAGACTTAGTGTTGCAAGAGAACATAATATTGTAGGCAAACTAGAAGTAGTGCCTCTCAGCATTTTTGTACT CCTACCTCAGTTTGCTTTAGTAGGGATTTCTGATACGTTCTTGGAAGTAGCCAAGCTAGAGTTTTTCTATGACCAGGCCCCGGAAGGAATGAAAAGCTTG GGGACTTCGTATTTCTGTAGCAGTATTGGAGTTGGGAATTACCTCAGCAGTTTTATCCTGTCAACGGTTTCTGGGATCACTAAGAAACATGGCCATAAAG GGTGGATTTTGGACAATCTAAATCTCTCTCGCATAGACTATTATTATGCATTCTTGGCCATCTTGGGCTTTCTCAACTTCCTCCTCTTTTTGCTTGTGGC AAACTACTTTGTTTATAATGTCGACATGGACTCCAAAAGGGATCTGCAGAGAGCAATGGAAACTTCCTCTAGCAAAAGTCCTGTTCAGATTTTATAA
AA sequence Show only first row Show all	>Potri.002G258700.1 pacid=42778625 polypeptide=Potri.002G258700.1.p locus=Potri.002G258700 ID=Potri.002G258700.1.v4.1 annot-version=v4.1 MICKVEEKGAADGSKDYTEDGTVDIKGNPALRSKSGRWKACSFILGYEVFERMAYYGIAANLVLYLTRKLHEGTVTSSNNVTNWAGTVWILPILGAYIAD AHLGRFRTFVIASGIYLLGMSLLTLAVSVPALRPPSCGHGIKDEGCDKRASALQKGIFYGALYIIAVGTGGTKPNISTMGADQFDDFEPKEKQQKLSFFN WWMFSIFFGTLFSNTFLVYIQDNVNWALGYGIPTMGLALSIIMFLAGNSFYRHKLPAGSPFTKMAQVLVASVRKWKVSLPNDPKELHELGIEGSARSARN RIDHTYLLRLLDKAAVKSGPTSPWMLCPVTQVEETKQMIKMLPVLMVTFIPSAMLAQLSTFFVKQGTTLDRSMGPHFEIPPASLGAFVTIFMLASLVLYD RCFVPIARHYTKNPRGITMLQRMGIGIILHIIVMIVAFVVERKRLSVAREHNIVGKLEVVPLSIFVLLPQFALVGISDTFLEVAKLEFFYDQAPEGMKSL GTSYFCSSIGVGNYLSSFILSTVSGITKKHGHKGWILDNLNLSRIDYYYAFLAILGFLNFLLFLLVANYFVYNVDMDSKRDLQRAMETSSSKSPVQIL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Potri.002G258700 [exp]	0	1	PTR2.1
AT2G20030			RING/U-box superfamily protein...		Potri.018G042501 [exp]	7.48	0.9434
AT1G14920	GRAS	RGA2, GAI	RESTORATION ON GROWTH ON AMMON...		Potri.016G027800 [exp]	8.77	0.9447
AT1G65610		ATGH9A2 ,KOR2	KORRIGAN 2, ARABIDOPSIS THALIA...		Potri.008G079500 [exp]	11.48	0.9423
					Potri.001G130800 [exp]	19.62	0.9376
AT2G37240			Thioredoxin superfamily protei...		Potri.008G113000 [exp]	20.61	0.9283
AT5G59730		ATEXO70H7	exocyst subunit exo70 family p...		Potri.009G026900 [exp]	21.21	0.9032
AT3G46900		COPT2	copper transporter 2 (.1)		Potri.006G093200 [exp]	23.17	0.8806
					Potri.015G134550 [exp]	25.13	0.9020
AT1G08930		ERD6	EARLY RESPONSE TO DEHYDRATION ...		Potri.013G027700 [exp]	25.27	0.9357
AT4G10780			LRR and NB-ARC domains-contain...		Potri.001G405025 [exp]	25.92	0.9232

Compare expression of checked genes

Potri.002G258700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.