Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06150 705 / 0 bHLH bHLH089, EMB1444 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT3G29230 439 / 5e-148 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G66520 415 / 2e-138 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 407 / 3e-134 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02750 402 / 2e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G08820 399 / 2e-131 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G29760 395 / 2e-129 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74630 387 / 2e-127 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48910 386 / 6e-127 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G50270 379 / 4e-125 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G105700 [exp] 442 / 3e-148 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G125500 [exp] 439 / 3e-148 AT3G29230 829 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G012600 [exp] 439 / 3e-147 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G128900 [exp] 437 / 2e-146 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.008G121400 [exp] 431 / 1e-145 AT1G13410 561 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G065500 [exp] 430 / 2e-144 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G044700 [exp] 424 / 1e-140 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G086100 [exp] 406 / 3e-136 AT5G15300 675 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G031600 [exp] 408 / 2e-134 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008825 [exp] 785 / 0 AT1G06150 614 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10039974 [exp] 785 / 0 AT1G06150 612 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10029436 [exp] 449 / 8e-151 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029344 [exp] 441 / 2e-148 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031423 [exp] 420 / 8e-140 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010909 [exp] 417 / 9e-139 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020743 [exp] 416 / 3e-138 AT1G04840 771 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029793 [exp] 409 / 2e-135 AT1G04840 756 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019797 [exp] 405 / 7e-135 AT3G29230 768 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014113 [exp] 405 / 1e-134 AT3G29230 767 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.002G258766.1 pacid=42779131 polypeptide=Potri.002G258766.1.p locus=Potri.002G258766 ID=Potri.002G258766.1.v4.1 annot-version=v4.1 ATGTCTTCTAACTGTTATTCAATTCAAACTATAGTTAACCACTTAAAGCACTGCAGCAAGCTGAAACAGCTACAATCCATGTATGCTGTCATGGTCAAAA CCAATACAAACCAAGATTGTTACTTAATGAATCAATTTATATCAGCTCTTTCTACTTTTAACCGTATGGATTATGCAGTTTTAGCCTATACCCAGATGGA AATTCCTAATGTTTTTGTGTATAATGCAATGATTAAAGGGTTTGTTCAAAGCTATCAACCAGTTCAGGCTCTTGAATTGTACGTTCAAATGCTAAGAGCT AATGTTTCTCCTACAAGTTATACATTTCCTTCGTTGATAAAAGCTTGTGGCTTGGTATCACAGTTGAGGTTTGCAGAAGCTGTTCATGGTCATGTTTGGA GAAATGGGTTTGATTCACACGTGTTTGTTCAAACTTCTTTGGTTGATTTTTACTCAAGTATGGGTAGAATTGAAGAATCTGTAAGGGTGTTTGATGAAAT GCCTGAAAGAGATGTCTTTGCTTGGACTACAATGGTTTCTGGTCTTGTGCGGGTCGGTGATATGAGTTCTGCTGGGAGATTGTTTGATATGATGCCTGAT AGGAATTTAGCTACTTGGAATACTTTGATTGATGGGTATGCAAGATTGAGAGAAGTTGATGTGGCGGAGTTGTTGTTTAATCAAATGCCAGCAAGAGATA TTATTTCATGGACTACAATGATCAATTGTTATTCTCAGAATAAGAGATTTAGAGAAGCATTGGGGGTTTTTAATGAGATGGCAAAACATGGGATCAGCCC AGATGAAGTGACCATGGCAACTGTGATTTCAGCTTGTGCTCATCTTGGAGCCCTTGACTTAGGGAAGGAAATACATTACTACATTATGCAGCATGGATTT AACCTTGATGTCTACATAGGTTCGGCATTGATTGATATGTATGCTAAGTGTGGGAGTCTAGATAGGTCCCTTTTGATGTTCTTCAAGTTGCGAGAGAAGA ACTTGTTCTGTTGGAATTCAGTGATTGAAGGGCTTGCTGTTCATGGATATGCAGAAGAAGCACTGGCAATGTTTGACAAGATGGAGAGGGAGAAAATTAA GCCAAATGGGGTTACATTTGTAAGTGTTTTAAGTGCCTGCAATCATGCAGGACTTATTGAAGAAGGTCGTAAGAGGTTTGCGAGTATGACACGAGATCAT TCCATCCCTCCTGGAGTTGAACATTATGGATGCATGGTTGATCTCTTGAGCAAAGCTGGCTTGCTTGAAGAAGCACTGCAATTGATAAGAACAATGAAGT TGGAACCTAATGCTGTTATTTGGGGTGCGTTGCTAAGTGGATGTAAGCTTCACAGGAACTTGGAGATTGCTCAGGTTGCTGCTAATAAATTGATGGTTTT GGAGCCTGGCAACAGTGGATATTACACTCTTTTGGTTAACATGAATGCTGAAGTTAACAGATGGGGCGAGGCTGCAAAGATCAGGTTAACCATGAAGGAG CAGGGGGTAGAAAAAAGATGCCCTGGGTCCAGTTGGATCGAGATGGAAAGTCAAGTTCATCAATTTGCGGCATCTGATAAATCTCATGCAGCTTCTGATG AGATTTACTCGTTGCTGGCTGAATTAGATGGGCAGATGAAGCTAGCGGGCTACGTACCTGAACTATGGTCTGTTTTGTAG
AA sequence Show only first row Show all	>Potri.002G258766.1 pacid=42779131 polypeptide=Potri.002G258766.1.p locus=Potri.002G258766 ID=Potri.002G258766.1.v4.1 annot-version=v4.1 MSSNCYSIQTIVNHLKHCSKLKQLQSMYAVMVKTNTNQDCYLMNQFISALSTFNRMDYAVLAYTQMEIPNVFVYNAMIKGFVQSYQPVQALELYVQMLRA NVSPTSYTFPSLIKACGLVSQLRFAEAVHGHVWRNGFDSHVFVQTSLVDFYSSMGRIEESVRVFDEMPERDVFAWTTMVSGLVRVGDMSSAGRLFDMMPD RNLATWNTLIDGYARLREVDVAELLFNQMPARDIISWTTMINCYSQNKRFREALGVFNEMAKHGISPDEVTMATVISACAHLGALDLGKEIHYYIMQHGF NLDVYIGSALIDMYAKCGSLDRSLLMFFKLREKNLFCWNSVIEGLAVHGYAEEALAMFDKMEREKIKPNGVTFVSVLSACNHAGLIEEGRKRFASMTRDH SIPPGVEHYGCMVDLLSKAGLLEEALQLIRTMKLEPNAVIWGALLSGCKLHRNLEIAQVAANKLMVLEPGNSGYYTLLVNMNAEVNRWGEAAKIRLTMKE QGVEKRCPGSSWIEMESQVHQFAASDKSHAASDEIYSLLAELDGQMKLAGYVPELWSVL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G06150	bHLH	bHLH089, EMB144...	EMBRYO DEFECTIVE 1444, basic h...		Potri.002G258766 [exp]	0	1
AT1G33410		NUP160, SAR1, A...	ARABIDOPSIS NUCLEOPORIN 160, S...		Potri.001G078600 [exp]	2.44	0.8785
AT3G10650		AtNUP1	unknown protein		Potri.010G244700 [exp]	6.70	0.8739
AT4G32700		TEB	TEBICHI, helicases;ATP-depende...		Potri.018G036600 [exp]	7.74	0.8772
AT1G78940			Protein kinase protein with ad...		Potri.004G170901 [exp]	9.94	0.8954
AT5G51200		EMB3142	EMBRYO DEFECTIVE 3142, Protein...		Potri.006G119600 [exp]	15.29	0.8486
AT1G78940			Protein kinase protein with ad...		Potri.004G170742 [exp]	19.44	0.8415
AT4G10320			tRNA synthetase class I (I, L,...		Potri.017G033200 [exp]	22.09	0.8248
AT2G27610			Tetratricopeptide repeat (TPR)...		Potri.004G184800 [exp]	24.06	0.8137
AT2G33600			NAD(P)-binding Rossmann-fold s...		Potri.002G003200 [exp]	26.38	0.8423
AT1G63020		SMD2, PolIVa, S...	SILENCING MOVEMENT DEFICIENT 2...		Potri.001G111300 [exp]	30.65	0.8453

Compare expression of checked genes

Potri.002G258766 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.